Rw0G011110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00480
OG0006668
Physical Location & Seq
Forward (+)
23548 .. 26779
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011110.1

Sequence Viewer

Length: 360 bp
ATGTTACTCAGGGAATCGGTGGCGGTGGCATCCTTCAGGGAAGGATTTCTGCAATTTCAAAACGACCGGTCACAGAGTCGGCGGAATGTCAAAGTCGGAAACCCTACCGTTCCGGGTCCGTCCATGGCGAAATTGAGCTTGGGCAACCAAGCTTTCTTTCTCATGGCCTTCATCGCCTGCACGAACCCTGCTGATCTAGCGAAGTATCAAGCAAATTGCAAGGCAATGAGGAGTGCTGCAACATCTCTTTCAAAGCTAGCAGATACAGGTCGTCAAGAACGCCCTAGTACTATGGCTGCCATTAGGCTCTTAGGAATGGAAATAAGTGATCTCACACTGGAACTGAATGATCTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.04

Weight (kDa)

9.77

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 82
AcuI CTGAAG 1 cut(s) 19
AfaI GTAC 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 59, 252
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 141, 154, 173
AluBI AGCT 3 cut(s) 138, 152, 256
AluI AGCT 3 cut(s) 138, 152, 256
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 236, 296
AsiGI ACCGGT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 114
AsuNHI GCTAGC 1 cut(s) 256
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 223, 283
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 3 cut(s) 197, 257, 285
BisI GCNGC 2 cut(s) 237, 297
BlsI GCNGC 2 cut(s) 238, 298
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 223, 283
BsgI GTGCAG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 67
BsiSI CCGG 2 cut(s) 67, 113
BsnI GGCC 1 cut(s) 167
Bsp143I GATC 3 cut(s) 193, 328, 349
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 2 cut(s) 23, 82
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 117
BspOI GCTAGC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 342
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 193, 328, 349
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 178, 258
BstDEI CTNAG 3 cut(s) 8, 310, 353
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 3 cut(s) 196, 331, 352
BstMBI GATC 3 cut(s) 193, 328, 349
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 173, 197
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 223, 283
BsuRI GGCC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 178, 258
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 2 cut(s) 124, 163
CviJI RGCY 6 cut(s) 138, 152, 167, 256, 296, 307
CviKI_1 RGCY 6 cut(s) 138, 152, 167, 256, 296, 307
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 3 cut(s) 8, 310, 353
DpnI GATC 3 cut(s) 195, 330, 351
DpnII GATC 3 cut(s) 193, 328, 349
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 127, 166
FaiI YATR 3 cut(s) 125, 164, 293
FatI CATG 2 cut(s) 123, 162
Fnu4HI GCNGC 2 cut(s) 237, 297
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 237, 297
FspBI CTAG 3 cut(s) 197, 257, 285
GluI GCNGC 2 cut(s) 237, 297
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 67, 113
Hin1II CATG 2 cut(s) 127, 166
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 14, 76
HpaII CCGG 2 cut(s) 67, 113
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 35, 43, 178
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 52, 180, 219, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 197
HpyF3I CTNAG 3 cut(s) 8, 310, 353
Hsp92II CATG 2 cut(s) 127, 166
Kzo9I GATC 3 cut(s) 193, 328, 349
LpnPI CCDG 7 cut(s) 22, 80, 126, 190, 201, 252, 323
Lsp1109I GCAGC 2 cut(s) 223, 283
LweI GCATC 1 cut(s) 38
MaeI CTAG 3 cut(s) 197, 257, 285
MaeIII GTNAC 2 cut(s) 3, 69
MalI GATC 3 cut(s) 195, 330, 351
MboI GATC 3 cut(s) 193, 328, 349
MluCI AATT 3 cut(s) 53, 131, 214
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 45
MspI CCGG 2 cut(s) 67, 113
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 173, 197
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 123
NdeII GATC 3 cut(s) 193, 328, 349
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 2 cut(s) 127, 166
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 14
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 2 cut(s) 238, 298
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SatI GCNGC 2 cut(s) 237, 297
Sau3AI GATC 3 cut(s) 193, 328, 349
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 114
SetI ASST 5 cut(s) 140, 154, 258, 271, 359
SfaNI GCATC 1 cut(s) 38
SinI GGWCC 1 cut(s) 116
Sse9I AATT 3 cut(s) 53, 131, 214
SsiI CCGC 2 cut(s) 23, 82
SspMI CTAG 3 cut(s) 197, 257, 285
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 109
TasI AATT 3 cut(s) 53, 131, 214
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 2 cut(s) 236, 296
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 197, 257, 285
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.