Rh6BG312800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006668
Physical Location & Seq
Forward (+)
54293959 .. 54296761
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG312800.1

Sequence Viewer

Length: 609 bp
ATGAAATCTTTACACCTCTCTGCTCAATTTCGTGCCCTCAATCCCAATCACACTTCTTCTTCTTCGATCACTCTCCTCCGACCCTGCAAATTCAACTCTCTTTCCCTCGCCTCGCCTCCCAAGCCCTCCCGCTTAATCACGCTTTGCGCTTCCAATTCCGACAAACCGTCGTCGGAATCGGCGGCGGTGGGGTCCATCAGGGAAGGGTTTCTTCAGTTTGAGAACGACCCGTCGCAGAGTCAGTGGAATGTGGAAGTCGGAAGCCCTAACGTTCCGGGTCCGTCCGTGGCGAAATTGAGCTTGGGCGACCAGGCTTTCTTTCTCATGGCCTTCATCGCCTGCACGACTTCGGTGGCATTTACGAGCCTTGTAATTGCAGCTGTCCCGACGATATGTGCAATGGGGAGAGCTGCAACATCTCTTTCAAAGCTGGCAGATACAGTTCGTCAAGAACTCCCTAGTACTATGGCTGCCATTAGGCTCTCAGGCATGGAAATAAGTGATCTCACACTGGAACTGAATGACCTAAGATATACTACATCAGGTTTTACTGGAGGAACTACTTCAAAAGGCAATTGGTCATCAGTCATATCACCAAGAGATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

21.35

Weight (kDa)

8.42

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 130, 182, 185
AclI AACGTT 1 cut(s) 270
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 463
AgsI TTSAA 3 cut(s) 94, 426, 567
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 5 cut(s) 300, 380, 410, 430, 606
AluI AGCT 5 cut(s) 300, 380, 410, 430, 606
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 3 cut(s) 377, 410, 470
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 2 cut(s) 207, 562
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 192, 278
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 192, 278
BaeGI GKGCMC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 389, 397, 457
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 311
BcnI CCSGG 1 cut(s) 276
BfaI CTAG 1 cut(s) 459
BisI GCNGC 4 cut(s) 183, 378, 411, 471
BlsI GCNGC 4 cut(s) 184, 379, 412, 472
BmcAI AGTACT 1 cut(s) 463
Bme1390I CCNGG 2 cut(s) 276, 311
Bme18I GGWCC 2 cut(s) 192, 278
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 192, 278
BmiI GGNNCC 2 cut(s) 193, 279
BmrFI CCNGG 2 cut(s) 276, 311
BpmI CTGGAG 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 516, 556
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 516, 556
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 389, 397, 457
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 66, 502
BspACI CCGC 3 cut(s) 130, 182, 185
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 497
BspLI GGNNCC 2 cut(s) 193, 279
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 2 cut(s) 516, 556
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 66, 502
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 168, 442
BstC8I GCNNGC 2 cut(s) 340, 432
BstDEI CTNAG 2 cut(s) 484, 527
BstDSI CCRYGG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 69, 505
BstMBI GATC 2 cut(s) 66, 502
BstMWI GCNNNNNNNGC 2 cut(s) 121, 335
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 274, 309
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 389, 397, 457
BsuRI GGCC 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 248, 509
Cac8I GCNNGC 2 cut(s) 340, 432
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 192, 278
Csp6I GTAC 1 cut(s) 462
CviAII CATG 2 cut(s) 325, 490
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 2 cut(s) 484, 527
DpnI GATC 2 cut(s) 68, 504
DpnII GATC 2 cut(s) 66, 502
DriI GACNNNNNGTC 1 cut(s) 166
Eam1105I GACNNNNNGTC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 192, 278
Eco57I CTGAAG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 309
FaeI CATG 2 cut(s) 328, 493
FaiI YATR 6 cut(s) 326, 394, 467, 491, 534, 590
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 1 cut(s) 368
FatI CATG 2 cut(s) 324, 489
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 183, 378, 411, 471
Fsp4HI GCNGC 4 cut(s) 183, 378, 411, 471
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 148
GluI GCNGC 4 cut(s) 183, 378, 411, 471
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 328, 493
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 2 cut(s) 176, 238
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 585
Hpy188I TCNGA 4 cut(s) 80, 160, 175, 260
Hpy188III TCNNGA 2 cut(s) 385, 449
Hpy99I CGWCG 4 cut(s) 172, 175, 235, 391
HpyAV CCTTC 2 cut(s) 197, 340
HpyCH4III ACNGT 2 cut(s) 168, 442
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 5 cut(s) 87, 342, 377, 398, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 335
HpyF3I CTNAG 2 cut(s) 484, 527
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 328, 493
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 66, 502
Lsp1109I GCAGC 3 cut(s) 389, 397, 457
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 270
MalI GATC 2 cut(s) 68, 504
MboI GATC 2 cut(s) 66, 502
MboII GAAGA 4 cut(s) 48, 51, 54, 203
MfeI CAATTG 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 6 cut(s) 26, 89, 154, 293, 372, 574
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 4 cut(s) 103, 153, 183, 238
MnlI CCTC 8 cut(s) 26, 47, 86, 116, 121, 126, 136, 548
MroXI GAANNNNTTC 2 cut(s) 207, 562
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 276, 311
MunI CAATTG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 121, 335
NciI CCSGG 1 cut(s) 276
NdeII GATC 2 cut(s) 66, 502
NlaIII CATG 2 cut(s) 328, 493
NlaIV GGNNCC 2 cut(s) 193, 279
PdmI GAANNNNTTC 2 cut(s) 207, 562
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 4 cut(s) 184, 379, 412, 472
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 193, 279
PspPI GGNCC 2 cut(s) 192, 278
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 4 cut(s) 183, 378, 411, 471
Sau3AI GATC 2 cut(s) 66, 502
Sau96I GGNCC 2 cut(s) 192, 278
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 276, 311
SduI GDGCHC 1 cut(s) 37
SetI ASST 9 cut(s) 18, 273, 302, 382, 412, 432, 528, 547, 608
SinI GGWCC 2 cut(s) 192, 278
Sse9I AATT 6 cut(s) 26, 89, 154, 293, 372, 574
SsiI CCGC 3 cut(s) 130, 182, 185
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 274, 309
TaaI ACNGT 2 cut(s) 168, 442
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 65
TasI AATT 6 cut(s) 26, 89, 154, 293, 372, 574
TatI WGTACW 1 cut(s) 461
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 2 cut(s) 248, 516
TseI GCWGC 3 cut(s) 377, 410, 470
TspDTI ATGAA 2 cut(s) 17, 322
TspGWI ACGGA 2 cut(s) 270, 274
TspRI CASTG 2 cut(s) 248, 516
VpaK11BI GGWCC 2 cut(s) 192, 278
XapI RAATTY 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 207, 562
XspI CTAG 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.