Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006668

Physical Location & Seq

Genomic Coordinates Forward (+)

50621986 .. 50625377

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG320700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAATCTTTACACCTCTCCGCTCAATTTCGTGCCCTCAATCCCAATCACACTTCTTCTTCTTCGATCACTCTCCTCCGACCCTGCAAATTCAACTCTCTTTCCCTCGCCTCGCCTCCCAAGCCCTCCCGCTTAATCACGCTTTGCGCTTCCACTTCCGACAAACCGTCGTCGGAATCGGCGGCGGCGGGGTCCATCAGGGAAGGGTTTCTTCAGTTTCAGAACGACCCGTCGCAGAGTCAGTGGAATGTGGAAGTCGGAAGCCCTAACGTTCCGGGTCCGTCTGTGGCGAAATTGAGCTTGGGCGACCAGGCTTTCTTTCTCATGGCCTTCATCGCCTGCACGACTTCGGTGGCATTTACGAGCCTTGTAATTGCAGCTGTCCCGACGATATGTGCAATGGGGAGAGCTGCAACATCTCTTTCAAAGCTGGCAGATACAGCTCGTCAAGAACTCCCTAGTACTATGGCTGCCATTAGGCTCTCAGGCATGGAAATAAGTGATCTCACACTGGAACTGAATGACCTAAGATATACTACATCAGGTTTTACTGGAGGAACTACTTCAAAAGGCAATTGGTCATCAGTCATATCTGTTATAATCTCTAATTCATTTTTGAGTCTTGTTATATGTTTCATGATGTCCCTTAGGGGAAATCCTATAAATTTGGAACAATATATATGCTTCATGTCATCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

24.84

Weight (kDa)

8.58

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08530 AT1G08530 AT1G08530
fragaria_vesca	FvH4_2g21680
malus_domestica	MD10G1185200.v1.1
prunus_persica	Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.8G225000_v2.0.a1
pyrus_communis	pycom10g16030
rosa_chinensis	RchiOBHm_Chr6g0288361
rosa_laevigata	RLG00000012413 RLG00000029638
rosa_multiflora	Rmu_sc0001038.1_g000008
rosa_roxburghii	Rroxscaffold_7G00180130
rosa_rugosa	Rorug06G0195800 Rorug06G0195900
rosa_samantha	Rh6AG306800 Rh6BG312800 Rh6CG320700 Rh6DG306000 Rh7DG490500
rosa_wichuraiana	Rw0G011110 Rw1G016060 Rw6G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	23
AciI	CCGC	5 cut(s)	21, 130, 182, 185, 188
AclI	AACGTT	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	89, 664
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	94, 426, 567
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	5 cut(s)	300, 380, 410, 430, 443
AluI	AGCT	5 cut(s)	300, 380, 410, 430, 443
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	377, 410, 470
ApoI	RAATTY	2 cut(s)	89, 664
Asp700I	GAANNNNTTC	2 cut(s)	207, 562
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	192, 278
AsuC2I	CCSGG	1 cut(s)	276
AvaII	GGWCC	2 cut(s)	192, 278
AxyI	CCTNAGG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	389, 397, 457
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	2 cut(s)	459, 700
BisI	GCNGC	5 cut(s)	183, 186, 378, 411, 471
BlsI	GCNGC	5 cut(s)	184, 187, 379, 412, 472
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	276, 311
Bme18I	GGWCC	2 cut(s)	192, 278
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	192, 278
BmiI	GGNNCC	2 cut(s)	193, 279
BmrFI	CCNGG	2 cut(s)	276, 311
BpmI	CTGGAG	1 cut(s)	573
BpuMI	CCSGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	516, 556
Bse21I	CCTNAGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	516, 556
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	389, 397, 457
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	368, 628
BsmFI	GGGAC	2 cut(s)	368, 628
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	66, 502
BspACI	CCGC	5 cut(s)	21, 130, 182, 185, 188
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	193, 279
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	516, 556
BssMI	GATC	2 cut(s)	66, 502
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	340, 432
BstDEI	CTNAG	3 cut(s)	484, 527, 647
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	69, 505
BstMBI	GATC	2 cut(s)	66, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 335, 440
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	274, 309
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	389, 397, 457
Bsu36I	CCTNAGG	1 cut(s)	647
BsuRI	GGCC	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	248, 509
Cac8I	GCNNGC	2 cut(s)	340, 432
CciI	TCATGA	1 cut(s)	636
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	192, 278
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	4 cut(s)	325, 490, 637, 688
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	484, 527, 647
DpnI	GATC	2 cut(s)	68, 504
DpnII	GATC	2 cut(s)	66, 502
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	192, 278
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	309
FaeI	CATG	4 cut(s)	328, 493, 640, 691
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	2 cut(s)	368, 628
FatI	CATG	4 cut(s)	324, 489, 636, 687
FauI	CCCGC	2 cut(s)	137, 181
Fnu4HI	GCNGC	5 cut(s)	183, 186, 378, 411, 471
Fsp4HI	GCNGC	5 cut(s)	183, 186, 378, 411, 471
FspBI	CTAG	2 cut(s)	459, 700
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	183, 186, 378, 411, 471
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	328, 493, 640, 691
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	3 cut(s)	176, 238, 619
HpaII	CCGG	1 cut(s)	275
Hpy188I	TCNGA	5 cut(s)	80, 160, 175, 222, 260
Hpy188III	TCNNGA	3 cut(s)	385, 449, 637
Hpy99I	CGWCG	4 cut(s)	172, 175, 235, 391
HpyAV	CCTTC	2 cut(s)	197, 340
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	5 cut(s)	87, 342, 377, 398, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 335, 440
HpyF3I	CTNAG	3 cut(s)	484, 527, 647
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	328, 493, 640, 691
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	66, 502
Lsp1109I	GCAGC	3 cut(s)	389, 397, 457
MaeI	CTAG	2 cut(s)	459, 700
MaeII	ACGT	1 cut(s)	270
MalI	GATC	2 cut(s)	68, 504
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	2 cut(s)	66, 502
MboII	GAAGA	4 cut(s)	48, 51, 54, 203
MfeI	CAATTG	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	7 cut(s)	26, 89, 293, 372, 574, 607, 664
MlyI	GAGTC	2 cut(s)	247, 628
MmeI	TCCRAC	4 cut(s)	103, 153, 183, 238
MnlI	CCTC	8 cut(s)	26, 47, 86, 116, 121, 126, 136, 548
MroXI	GAANNNNTTC	2 cut(s)	207, 562
MseI	TTAA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	276, 311
MunI	CAATTG	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	121, 335, 440
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	66, 502
NlaIII	CATG	4 cut(s)	328, 493, 640, 691
NlaIV	GGNNCC	2 cut(s)	193, 279
PagI	TCATGA	1 cut(s)	636
PdmI	GAANNNNTTC	2 cut(s)	207, 562
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	184, 187, 379, 412, 472
PleI	GAGTC	2 cut(s)	246, 627
PpsI	GAGTC	2 cut(s)	246, 627
PsiI	TTATAA	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	193, 279
PspPI	GGNCC	2 cut(s)	192, 278
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	5 cut(s)	183, 186, 378, 411, 471
Sau3AI	GATC	2 cut(s)	66, 502
Sau96I	GGNCC	2 cut(s)	192, 278
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	2 cut(s)	247, 628
ScrFI	CCNGG	2 cut(s)	276, 311
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	18, 273, 302, 382, 412, 432, 445, 528, 547
SinI	GGWCC	2 cut(s)	192, 278
Sse9I	AATT	7 cut(s)	26, 89, 293, 372, 574, 607, 664
SsiI	CCGC	5 cut(s)	21, 130, 182, 185, 188
SspMI	CTAG	2 cut(s)	459, 700
StyD4I	CCNGG	2 cut(s)	274, 309
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	65
TasI	AATT	7 cut(s)	26, 89, 293, 372, 574, 607, 664
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	2 cut(s)	185, 188
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	2 cut(s)	248, 516
TseI	GCWGC	3 cut(s)	377, 410, 470
TspDTI	ATGAA	5 cut(s)	17, 322, 600, 625, 676
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	248, 516
VpaK11BI	GGWCC	2 cut(s)	192, 278
XapI	RAATTY	2 cut(s)	89, 664
XmnI	GAANNNNTTC	2 cut(s)	207, 562
XspI	CTAG	2 cut(s)	459, 700
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.