Rh7DG490500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006668
Physical Location & Seq
Reverse (-)
69622599 .. 69625032
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG490500.1

Sequence Viewer

Length: 363 bp
ATGGCGAAATTGAGCTTGGGCGACCAAGCTTTCTTTTTCATGGCCTTCATCGCCTGCACGGATCCCAGAAAATTTAGAACTGTAATAATAGACAAGGCAATGGGGAGTGCTGCAACATCTCTTTCAAAGCTAGCAGATACAGGTTGTCAAGAACGCCCTAGTACTATGGCTGCCATTAGACTCTTAGGAATGGAAATAAGTGATCTCACACTGGAACTGAATGACGTTTTACATGAGGAATTACTTCCAAAGGCAATTGGTCATCAGTTATCTATGTCAAAACTTTCTAACTCCCAGTCCCATAGGCTTACCATCAACAAGTATTCTGCTCTTGAAACCGCTGGGAAGCTTCCATGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.19

Weight (kDa)

8.64

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 339
AclWI GGATC 2 cut(s) 56, 69
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 2 cut(s) 126, 335
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 4 cut(s) 15, 29, 130, 349
AluI AGCT 4 cut(s) 15, 29, 130, 349
AlwI GGATC 2 cut(s) 56, 69
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 110, 170
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 243
AsuNHI GCTAGC 1 cut(s) 130
BamHI GGATCC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 97, 157
BccI CCATC 1 cut(s) 320
BfaI CTAG 2 cut(s) 131, 159
BisI GCNGC 2 cut(s) 111, 171
BlsI GCNGC 2 cut(s) 112, 172
BmcAI AGTACT 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 289
BmtI GCTAGC 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 216, 295
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 216, 295
BseXI GCAGC 2 cut(s) 97, 157
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 1 cut(s) 44
BslFI GGGAC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 61, 202
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 1 cut(s) 339
BspANI GGCC 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 56, 69
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 2 cut(s) 216, 295
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 61, 202
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 55, 132
BstDEI CTNAG 1 cut(s) 184
BstDSI CCRYGG 1 cut(s) 353
BstKTI GATC 2 cut(s) 64, 205
BstMBI GATC 2 cut(s) 61, 202
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 97, 157
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 55, 132
Csp6I GTAC 1 cut(s) 162
CviAII CATG 3 cut(s) 40, 233, 354
CviJI RGCY 7 cut(s) 15, 29, 44, 130, 170, 307, 349
CviKI_1 RGCY 7 cut(s) 15, 29, 44, 130, 170, 307, 349
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 184
DpnI GATC 2 cut(s) 63, 204
DpnII GATC 2 cut(s) 61, 202
Eco130I CCWWGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 3 cut(s) 43, 236, 357
FaiI YATR 6 cut(s) 41, 167, 234, 275, 303, 355
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 39, 232, 353
Fnu4HI GCNGC 2 cut(s) 111, 171
Fsp4HI GCNGC 2 cut(s) 111, 171
FspBI CTAG 2 cut(s) 131, 159
GluI GCNGC 2 cut(s) 111, 171
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 3 cut(s) 43, 236, 357
HindIII AAGCTT 2 cut(s) 27, 347
HinfI GANTC 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 149, 332
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 57, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 43, 236, 357
Kzo9I GATC 2 cut(s) 61, 202
LpnPI CCDG 6 cut(s) 67, 79, 126, 197, 308, 327
Lsp1109I GCAGC 2 cut(s) 97, 157
MaeI CTAG 2 cut(s) 131, 159
MaeII ACGT 1 cut(s) 225
MalI GATC 2 cut(s) 63, 204
MboI GATC 2 cut(s) 61, 202
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 61
MluCI AATT 4 cut(s) 8, 71, 239, 255
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 341
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 353
NdeII GATC 2 cut(s) 61, 202
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 43, 236, 357
NlaIV GGNNCC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 243
PkrI GCNGC 2 cut(s) 112, 172
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 2 cut(s) 111, 171
Sau3AI GATC 2 cut(s) 61, 202
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 1 cut(s) 174
SetI ASST 6 cut(s) 17, 31, 132, 145, 228, 351
Sse9I AATT 4 cut(s) 8, 71, 239, 255
SsiI CCGC 1 cut(s) 339
SspMI CTAG 2 cut(s) 131, 159
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 228
TasI AATT 4 cut(s) 8, 71, 239, 255
TatI WGTACW 1 cut(s) 161
TscAI CASTG 1 cut(s) 216
TseI GCWGC 2 cut(s) 110, 170
TspDTI ATGAA 2 cut(s) 28, 37
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 2 cut(s) 131, 159
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.