Rw1G016060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006668
Physical Location & Seq
Forward (+)
35748508 .. 35750887
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016060.1

Sequence Viewer

Length: 426 bp
ATGTACTGTAGGCAATGGGGAGTGGGGAGTGCTACAACATCTCTTTCAAAGCTAGCAGATACAGGTCGTCAAGAACGCCCTAGTACTATGGCGGCCATTAGGCTTTTAGGAATGAAGATAAGTGATCTCACACTGGAACTGAATGACCTAAGTAAGACCGAGACCGAGCAGGGCCCGAAAATAAGTAAGACCGAGACCGAGCCCGAAACTGTCGGTTCGGGCTTTTTCCAGAATGAAAACCTACAAAAACCAAACTCAGACTTTTCGGAGGTACTGAGACGGAGATTTGAGCTGGTAATTTTTTTCTTGGTGTCTTGCCTTTTGCAAAGTCTGAACTTTGAAATAGGGTTGAATCACCTGAATGGTTTAGGGTTTAAATCTGGGTTTTCAGAAATGGGGGAAGAACATGATATCCTTCGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.76

Weight (kDa)

5.23

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 3 cut(s) 5, 85, 273
AgsI TTSAA 3 cut(s) 48, 341, 352
AloI GAACNNNNNNTCC 1 cut(s) 396
AluBI AGCT 2 cut(s) 52, 292
AluI AGCT 2 cut(s) 52, 292
Alw26I GTCTC 3 cut(s) 155, 188, 271
AoxI GGCC 2 cut(s) 93, 172
ApaI GGGCCC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 172, 173
AsuHPI GGTGA 1 cut(s) 347
AsuNHI GCTAGC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 176
BanII GRGCYC 2 cut(s) 176, 204
BcoDI GTCTC 3 cut(s) 155, 188, 271
BfaI CTAG 2 cut(s) 53, 81
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 85
BmgT120I GGNCC 2 cut(s) 172, 173
BmiI GGNNCC 1 cut(s) 174
BmtI GCTAGC 1 cut(s) 56
BsaI GGTCTC 2 cut(s) 155, 188
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 266, 270
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 176
BshFI GGCC 2 cut(s) 95, 174
BsmAI GTCTC 3 cut(s) 155, 188, 271
BsmBI CGTCTC 1 cut(s) 271
BsnI GGCC 2 cut(s) 95, 174
Bso31I GGTCTC 2 cut(s) 155, 188
Bsp120I GGGCCC 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 176, 204
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 95, 174
BspCNI CTCAG 2 cut(s) 267, 269
BspLI GGNNCC 1 cut(s) 174
BspOI GCTAGC 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 155, 188
BsrDI GCAATG 1 cut(s) 20
BsrI ACTGG 1 cut(s) 138
BssMI GATC 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 8, 211
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 149, 256, 275
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 3 cut(s) 155, 188, 271
BstMBI GATC 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 95, 174
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 172, 173
Csp6I GTAC 3 cut(s) 4, 84, 272
CviAII CATG 1 cut(s) 407
CviJI RGCY 8 cut(s) 52, 95, 103, 174, 202, 222, 292, 423
CviKI_1 RGCY 8 cut(s) 52, 95, 103, 174, 202, 222, 292, 423
CviQI GTAC 3 cut(s) 4, 84, 272
DdeI CTNAG 3 cut(s) 149, 256, 275
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraI TTTAAA 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 176, 204
Eco31I GGTCTC 2 cut(s) 155, 188
Eco32I GATATC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 172
EcoRV GATATC 1 cut(s) 412
EcoT38I GRGCYC 2 cut(s) 176, 204
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 1 cut(s) 410
FaiI YATR 2 cut(s) 89, 408
FatI CATG 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 93
FriOI GRGCYC 2 cut(s) 176, 204
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 53, 81
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 2 cut(s) 95, 174
Hin1II CATG 1 cut(s) 410
HinfI GANTC 1 cut(s) 352
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 4 cut(s) 259, 268, 333, 391
Hpy188III TCNNGA 2 cut(s) 71, 229
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 2 cut(s) 8, 211
HpyCH4V TGCA 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 149, 256, 275
Hsp92II CATG 1 cut(s) 410
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 48, 119, 155, 242, 278, 366, 371
MaeI CTAG 2 cut(s) 53, 81
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 127, 413
MhlI GDGCHC 2 cut(s) 176, 204
MluCI AATT 1 cut(s) 297
MnlI CCTC 1 cut(s) 262
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 360
NdeII GATC 1 cut(s) 124
NheI GCTAGC 1 cut(s) 52
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 174
PspOMI GGGCCC 1 cut(s) 172
PspPI GGNCC 2 cut(s) 172, 173
RsaI GTAC 3 cut(s) 5, 85, 273
RsaNI GTAC 3 cut(s) 4, 84, 272
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 172, 173
ScaI AGTACT 1 cut(s) 85
SduI GDGCHC 2 cut(s) 176, 204
SetI ASST 7 cut(s) 54, 67, 150, 243, 273, 294, 360
SfcI CTRYAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 92
SspMI CTAG 2 cut(s) 53, 81
TaaI ACNGT 2 cut(s) 8, 211
TaqII GACCGA 4 cut(s) 173, 179, 206, 212
TasI AATT 1 cut(s) 297
TatI WGTACW 2 cut(s) 3, 83
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 128, 249
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 138
XspI CTAG 2 cut(s) 53, 81
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.