AT1G08640

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012266
Physical Location & Seq
Reverse (-)
2748361 .. 2751620
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08640.1

Sequence Viewer

Length: 885 bp
ATGGCTCCCGCACTATCTACTTCTTGCTCCTCCGTCATGGCTTTCTCAACATCAAACGCGCTTCGTTACCATCATCCTCAAATTTCTCTCAGGAACTCTCTTCGCGCTCCCAAATCGCCTTCTTTTGTCAGGCTTCCCCTCGGAAAGGTGTTACAGAGCAGGATTGTGATACGTGCTGCTTCGTCTGCGGCTGGTAATCCACAGTCTGATGCTGACTTTAATCCGTATGAGGTTCTTGGTGTTAACCCTATAGAGGGATTTGACAAGATCAAGCAAACTTATGGAAGGAAACTTAAAGATGCTCAGAGGAGCGGTGATGAAGCCACTGCTGCTCTACTTGAGAAGGCATATGATAAGCTCATGTATGCCCAGTTGATGAATAGGAAAAAGGGTGTGACTTTTGGTTCGTTTAAGGTTTCCAAGGACATTAAATATGCTGATAAGCAGCCCATTATACCATGGGGTCCAAGGTTTTCCAGGTCCTCCAAGAATGATATGTTGATCAACCTAGCAATATCAGTTGTGTTTAGTGCATGGATTGCGATAAAACGTAATGTTGAATACAAACCGCTGCAGTTCATGTCTTTTGTATTTGTTTACAGAATTTTTGAGAAATTAAAATCCTTTGAAGCACCTTCATCTCCAATATATAACGAGGAAGGCGAAGAAAGTGGACGGGGATTGAGAATGGGAAAGAGGCTTCTTCGTTCTCTTTCCTTAGTTTTTGGCTCTATACTCTTAGCATCTTTGGCATACACTGGGTTCTTAAATGGCATCGAGTACATGGGCTACTCCATACCCATGGTTCTTTACAACAACCAGGAACTTATAGTGACGGCGTCATCGGCTTTCATGCTCTATGTTATAGCGTCGTTTTACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

294

Amino Acids

32.9

Weight (kDa)

9.82

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 87 - 194 1.6e-07 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 312
AccII CGCG 2 cut(s) 59, 105
AciI CCGC 4 cut(s) 9, 188, 312, 569
AcsI RAATTY 2 cut(s) 81, 603
AcyI GRCGYC 1 cut(s) 839
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 3 cut(s) 145, 253, 254
AgsI TTSAA 2 cut(s) 560, 629
AjnI CCWGG 2 cut(s) 476, 819
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
ApeKI GCWGC 4 cut(s) 176, 329, 445, 571
ApoI RAATTY 2 cut(s) 81, 603
ArsI GACNNNNNNTTYG 2 cut(s) 388, 420
AspLEI GCGC 2 cut(s) 61, 107
AspS9I GGNCC 2 cut(s) 464, 480
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 2 cut(s) 464, 480
BbvI GCAGC 4 cut(s) 163, 316, 457, 558
BccI CCATC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 852
BciT130I CCWGG 2 cut(s) 478, 821
BclI TGATCA 1 cut(s) 501
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 2 cut(s) 249, 572
BisI GCNGC 5 cut(s) 177, 189, 330, 446, 572
BlsI GCNGC 5 cut(s) 178, 190, 331, 447, 573
Bme1390I CCNGG 2 cut(s) 478, 821
Bme18I GGWCC 2 cut(s) 464, 480
BmgT120I GGNCC 2 cut(s) 464, 480
BmiI GGNNCC 2 cut(s) 6, 465
BmrFI CCNGG 2 cut(s) 478, 821
BmrI ACTGGG 2 cut(s) 364, 768
BmsI GCATC 4 cut(s) 199, 289, 752, 783
BmuI ACTGGG 2 cut(s) 364, 768
BpuEI CTTGAG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 839
BsaJI CCNNGG 5 cut(s) 139, 420, 458, 467, 801
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 253, 254
Bse1I ACTGG 2 cut(s) 370, 763
BseBI CCWGG 2 cut(s) 478, 821
BseDI CCNNGG 5 cut(s) 139, 420, 458, 467, 801
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 145, 253, 254
BseMII CTCAG 2 cut(s) 103, 317
BseNI ACTGG 2 cut(s) 370, 763
BseRI GAGGAG 2 cut(s) 19, 322
BseXI GCAGC 4 cut(s) 163, 316, 457, 558
Bsh1236I CGCG 2 cut(s) 59, 105
BslI CCNNNNNNNGG 3 cut(s) 145, 253, 254
Bsp143I GATC 2 cut(s) 267, 501
Bsp19I CCATGG 2 cut(s) 458, 801
BspACI CCGC 4 cut(s) 9, 188, 312, 569
BspCNI CTCAG 2 cut(s) 102, 316
BspFNI CGCG 2 cut(s) 59, 105
BspLI GGNNCC 2 cut(s) 6, 465
BspMAI CTGCAG 1 cut(s) 576
BsrBI CCGCTC 1 cut(s) 312
BsrI ACTGG 2 cut(s) 370, 763
BssECI CCNNGG 5 cut(s) 139, 420, 458, 467, 801
BssMI GATC 2 cut(s) 267, 501
BssNI GRCGYC 1 cut(s) 839
BssT1I CCWWGG 4 cut(s) 420, 458, 467, 801
Bst2UI CCWGG 2 cut(s) 478, 821
Bst4CI ACNGT 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 839
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 173
BstDEI CTNAG 4 cut(s) 89, 303, 718, 739
BstDSI CCRYGG 2 cut(s) 458, 801
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 59, 105
BstHHI GCGC 2 cut(s) 61, 107
BstKTI GATC 2 cut(s) 270, 504
BstMBI GATC 2 cut(s) 267, 501
BstMWI GCNNNNNNNGC 5 cut(s) 185, 329, 539, 749, 845
BstNI CCWGG 2 cut(s) 478, 821
BstSCI CCNGG 2 cut(s) 476, 819
BstSFI CTRYAG 2 cut(s) 249, 572
BstUI CGCG 2 cut(s) 59, 105
BstV1I GCAGC 4 cut(s) 163, 316, 457, 558
BstXI CCANNNNNNTGG 1 cut(s) 802
BtgI CCRYGG 2 cut(s) 458, 801
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 756
CfoI GCGC 2 cut(s) 61, 107
Cfr13I GGNCC 2 cut(s) 464, 480
CseI GACGC 2 cut(s) 828, 858
Csp6I GTAC 1 cut(s) 781
CviAII CATG 8 cut(s) 37, 361, 459, 534, 580, 784, 802, 853
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 4 cut(s) 89, 303, 718, 739
DpnI GATC 2 cut(s) 269, 503
DpnII GATC 2 cut(s) 267, 501
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 4 cut(s) 420, 458, 467, 801
Eco47I GGWCC 2 cut(s) 464, 480
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 476, 819
EcoT14I CCWWGG 4 cut(s) 420, 458, 467, 801
ErhI CCWWGG 4 cut(s) 420, 458, 467, 801
FaeI CATG 8 cut(s) 40, 364, 462, 537, 583, 787, 805, 856
FatI CATG 8 cut(s) 36, 360, 458, 533, 579, 783, 801, 852
FauI CCCGC 1 cut(s) 16
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 5 cut(s) 177, 189, 330, 446, 572
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 5 cut(s) 177, 189, 330, 446, 572
FspBI CTAG 1 cut(s) 509
GlaI GCGC 2 cut(s) 60, 106
GluI GCNGC 5 cut(s) 177, 189, 330, 446, 572
HgaI GACGC 2 cut(s) 828, 858
HhaI GCGC 2 cut(s) 61, 107
Hin1I GRCGYC 1 cut(s) 839
Hin1II CATG 8 cut(s) 40, 364, 462, 537, 583, 787, 805, 856
Hin6I GCGC 2 cut(s) 59, 105
HinP1I GCGC 2 cut(s) 59, 105
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HpaI GTTAAC 1 cut(s) 244
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 3 cut(s) 244, 598, 674
Hpy188I TCNGA 3 cut(s) 143, 208, 306
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 3 cut(s) 244, 598, 674
Hpy99I CGWCG 1 cut(s) 874
HpyAV CCTTC 5 cut(s) 129, 279, 337, 645, 653
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4IV ACGT 2 cut(s) 172, 550
HpyCH4V TGCA 2 cut(s) 533, 574
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 329, 539, 749, 845
HpyF3I CTNAG 4 cut(s) 89, 303, 718, 739
HpySE526I ACGT 2 cut(s) 172, 550
Hsp92I GRCGYC 1 cut(s) 839
Hsp92II CATG 8 cut(s) 40, 364, 462, 537, 583, 787, 805, 856
HspAI GCGC 2 cut(s) 59, 105
Ksp22I TGATCA 1 cut(s) 501
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 267, 501
LmnI GCTCC 4 cut(s) 10, 32, 112, 309
Lsp1109I GCAGC 4 cut(s) 163, 316, 457, 558
LweI GCATC 4 cut(s) 199, 289, 752, 783
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 172, 550
MaeIII GTNAC 4 cut(s) 65, 150, 394, 832
MalI GATC 2 cut(s) 269, 503
MbiI CCGCTC 1 cut(s) 312
MboI GATC 2 cut(s) 267, 501
MboII GAAGA 3 cut(s) 92, 677, 695
MluCI AATT 3 cut(s) 81, 603, 614
MnlI CCTC 9 cut(s) 40, 87, 149, 223, 247, 300, 493, 649, 690
MseI TTAA 7 cut(s) 219, 243, 294, 411, 429, 617, 767
MslI CAYNNNNRTG 1 cut(s) 800
MspA1I CMGCKG 1 cut(s) 571
MspR9I CCNGG 2 cut(s) 478, 821
MvaI CCWGG 2 cut(s) 478, 821
MvnI CGCG 2 cut(s) 59, 105
MwoI GCNNNNNNNGC 5 cut(s) 185, 329, 539, 749, 845
NcoI CCATGG 2 cut(s) 458, 801
NdeI CATATG 1 cut(s) 349
NdeII GATC 2 cut(s) 267, 501
NlaIII CATG 8 cut(s) 40, 364, 462, 537, 583, 787, 805, 856
NlaIV GGNNCC 2 cut(s) 6, 465
NmuCI GTSAC 2 cut(s) 394, 832
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PflFI GACNNNGTC 1 cut(s) 838
PkrI GCNGC 5 cut(s) 178, 190, 331, 447, 573
Ppu21I YACGTR 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 476, 819
PspGI CCWGG 2 cut(s) 476, 819
PspN4I GGNNCC 2 cut(s) 6, 465
PspPI GGNCC 2 cut(s) 464, 480
PspPPI RGGWCCY 1 cut(s) 480
PstI CTGCAG 1 cut(s) 576
PsyI GACNNNGTC 1 cut(s) 838
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
RseI CAYNNNNRTG 1 cut(s) 800
SaqAI TTAA 7 cut(s) 219, 243, 294, 411, 429, 617, 767
SatI GCNGC 5 cut(s) 177, 189, 330, 446, 572
Sau3AI GATC 2 cut(s) 267, 501
Sau96I GGNCC 2 cut(s) 464, 480
ScrFI CCNGG 2 cut(s) 478, 821
SfaNI GCATC 4 cut(s) 199, 289, 752, 783
SfcI CTRYAG 2 cut(s) 249, 572
SinI GGWCC 2 cut(s) 464, 480
SmiMI CAYNNNNRTG 1 cut(s) 800
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 81, 603, 614
SsiI CCGC 4 cut(s) 9, 188, 312, 569
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 2 cut(s) 476, 819
StyI CCWWGG 4 cut(s) 420, 458, 467, 801
TaaI ACNGT 1 cut(s) 204
TaiI ACGT 2 cut(s) 175, 553
TaqI TCGA 1 cut(s) 777
TasI AATT 3 cut(s) 81, 603, 614
TatI WGTACW 1 cut(s) 780
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 7 cut(s) 219, 243, 294, 411, 429, 617, 767
Tru9I TTAA 7 cut(s) 219, 243, 294, 411, 429, 617, 767
TscAI CASTG 2 cut(s) 331, 763
TseFI GTSAC 2 cut(s) 394, 832
TseI GCWGC 4 cut(s) 176, 329, 445, 571
Tsp45I GTSAC 2 cut(s) 394, 832
TspDTI ATGAA 5 cut(s) 333, 392, 568, 627, 841
TspGWI ACGGA 2 cut(s) 22, 213
TspRI CASTG 2 cut(s) 331, 763
Tth111I GACNNNGTC 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 464, 480
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 2 cut(s) 81, 603
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.