FvH4_6g01960

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012266
Physical Location & Seq
Reverse (-)
1125222 .. 1130253
5032 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01960.t2

Sequence Viewer

Length: 849 bp
ATGGCTTTAGCAATTTCCCATGCTCTTCTCTGCCCCAAACTGCAGTTTCCCCAAAGAAACTTCCGCCCTAAAGCTCCACCCCTGAGTTTCTCACCTCCCAATTTCAGAGCAATTCCGCAGAATAGAAGGATAGTGTTGGCTGCTGCGTCTGCAGCTGGAAGTTCTAATTCGGACAGCGGTTTAAATCCGTATGAGATTCTCGGTGTGAACCCGATTGAGGGGTTTGACAAGGTTAAGGAAACATATAAGAGAAAACACAAGGAGGCCATGAGCAACGGTGACGAAGAAGGTGCTGCTACACTGGAGAAAGCATATGACAAACTCATGATGTCACAATTAACGAACAGGAAGAAAGGCATGACATTTGGTTCTTTCAAGGTTTCGAAGGATATAAAATATGCTGATAAGCAACCGATTGTACCGTGGGGTCCTAGGTTCACCAAGTCCAGTGGACAAGATATCCGTATCAATCTGGCAATTTCTGCCGTATTTGTAGCTTGGATTGCTATTGTGCGCAATGCTGACTATAAACCACTCCAGTTTCTATCCTTTGCCTTCGTTTATCGCATTTTTGAGAAGTTGAAATCCTTTGAAGGACCTGTAACTCCAAAATACACTGAAGATGGTGAGGAAGTGGGGAAGGGACTGCAGATGGGAAAACGGCTGCTTCGTGCTCTTGGACTAGTCTTTGGCTGTATTGCTGTTGCTTCTCTGGGATACACTGGTTCTCTGAATGTGATCGAGTATATGGCTAGTTACGTTCCTGCTATTCTTTACAATAATCAGGAATTGATAATCACCTCAGTAACTTCAGTCATGCTCTACATTATGGCATCATATTACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

283

Amino Acids

31.36

Weight (kDa)

9.61

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 75 - 190 3e-10 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 515
AciI CCGC 3 cut(s) 64, 116, 177
AcuI CTGAAG 2 cut(s) 639, 795
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 217, 218
AgsI TTSAA 3 cut(s) 376, 583, 593
AhlI ACTAGT 1 cut(s) 682
AluBI AGCT 3 cut(s) 74, 155, 497
AluI AGCT 3 cut(s) 74, 155, 497
Alw21I GWGCWC 1 cut(s) 676
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 5 cut(s) 140, 143, 152, 293, 664
AspA2I CCTAGG 1 cut(s) 431
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 2 cut(s) 428, 596
AsuHPI GGTGA 5 cut(s) 84, 290, 430, 638, 790
AsuII TTCGAA 1 cut(s) 383
AvaII GGWCC 2 cut(s) 428, 596
AvrII CCTAGG 1 cut(s) 431
BaeI ACNNNNGTAYC 2 cut(s) 709, 742
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 5 cut(s) 127, 130, 164, 280, 651
BccI CCATC 2 cut(s) 617, 646
BceAI ACGGC 2 cut(s) 470, 677
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciVI GTATCC 1 cut(s) 710
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 3 cut(s) 432, 683, 753
BfmI CTRYAG 3 cut(s) 41, 150, 647
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 5 cut(s) 141, 144, 153, 294, 665
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 5 cut(s) 142, 145, 154, 295, 666
Bme18I GGWCC 2 cut(s) 428, 596
BmgT120I GGNCC 2 cut(s) 428, 596
BmiI GGNNCC 1 cut(s) 429
BmsI GCATC 1 cut(s) 842
BpmI CTGGAG 2 cut(s) 323, 521
Bpu14I TTCGAA 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 422, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 218
Bse1I ACTGG 4 cut(s) 306, 447, 538, 727
Bse3DI GCAATG 1 cut(s) 523
BseDI CCNNGG 2 cut(s) 422, 431
BseLI CCNNNNNNNGG 2 cut(s) 217, 218
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 74, 816
BseNI ACTGG 4 cut(s) 306, 447, 538, 727
BseXI GCAGC 5 cut(s) 127, 130, 164, 280, 651
BshFI GGCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 676
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 217, 218
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 1 cut(s) 738
BspACI CCGC 3 cut(s) 64, 116, 177
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 2 cut(s) 75, 815
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 3 cut(s) 45, 154, 651
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 4 cut(s) 306, 447, 538, 727
BssECI CCNNGG 2 cut(s) 422, 431
BssMI GATC 1 cut(s) 738
BssT1I CCWWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 278, 423
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 83, 802
BstDSI CCRYGG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 1 cut(s) 741
BstMBI GATC 1 cut(s) 738
BstMWI GCNNNNNNNGC 4 cut(s) 149, 152, 482, 503
BstSFI CTRYAG 3 cut(s) 41, 150, 647
BstV1I GCAGC 5 cut(s) 127, 130, 164, 280, 651
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 422
BtsIMutI CAGTG 4 cut(s) 299, 454, 615, 720
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 428, 596
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 419
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CviAII CATG 5 cut(s) 20, 268, 325, 358, 817
CviJI RGCY 9 cut(s) 5, 74, 140, 155, 266, 497, 664, 693, 752
CviKI_1 RGCY 9 cut(s) 5, 74, 140, 155, 266, 497, 664, 693, 752
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 2 cut(s) 83, 802
DpnI GATC 1 cut(s) 740
DpnII GATC 1 cut(s) 738
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 431
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 428, 596
Eco57I CTGAAG 2 cut(s) 639, 795
EcoO109I RGGNCCY 2 cut(s) 428, 596
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 5 cut(s) 23, 271, 328, 361, 820
FaqI GGGAC 1 cut(s) 657
FatI CATG 5 cut(s) 19, 267, 324, 357, 816
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 5 cut(s) 141, 144, 153, 294, 665
Fsp4HI GCNGC 5 cut(s) 141, 144, 153, 294, 665
FspBI CTAG 3 cut(s) 432, 683, 753
FspI TGCGCA 1 cut(s) 515
GlaI GCGC 1 cut(s) 515
GluI GCNGC 5 cut(s) 141, 144, 153, 294, 665
GsuI CTGGAG 2 cut(s) 323, 521
HaeIII GGCC 1 cut(s) 266
HgaI GACGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 516
Hin1II CATG 5 cut(s) 23, 271, 328, 361, 820
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HinfI GANTC 1 cut(s) 196
HphI GGTGA 5 cut(s) 84, 290, 430, 638, 790
Hpy166II GTNNAC 3 cut(s) 208, 438, 452
Hpy188I TCNGA 3 cut(s) 107, 172, 732
Hpy188III TCNNGA 2 cut(s) 325, 785
Hpy8I GTNNAC 3 cut(s) 208, 438, 452
HpyAV CCTTC 6 cut(s) 120, 281, 379, 565, 587, 634
HpyCH4III ACNGT 2 cut(s) 278, 423
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 3 cut(s) 43, 152, 649
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 152, 482, 503
HpyF3I CTNAG 2 cut(s) 83, 802
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 5 cut(s) 23, 271, 328, 361, 820
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 1 cut(s) 738
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 5 cut(s) 127, 130, 164, 280, 651
LweI GCATC 1 cut(s) 842
MaeI CTAG 3 cut(s) 432, 683, 753
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 5 cut(s) 278, 330, 601, 755, 805
MalI GATC 1 cut(s) 740
MboI GATC 1 cut(s) 738
MboII GAAGA 4 cut(s) 17, 296, 361, 632
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 7 cut(s) 12, 100, 111, 166, 335, 477, 788
MnlI CCTC 5 cut(s) 105, 211, 256, 622, 811
MseI TTAA 3 cut(s) 182, 234, 338
MspA1I CMGCKG 2 cut(s) 155, 177
MwoI GCNNNNNNNGC 4 cut(s) 149, 152, 482, 503
NdeI CATATG 1 cut(s) 313
NdeII GATC 1 cut(s) 738
NlaIII CATG 5 cut(s) 23, 271, 328, 361, 820
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 2 cut(s) 278, 330
NsbI TGCGCA 1 cut(s) 515
NspV TTCGAA 1 cut(s) 383
PagI TCATGA 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 5 cut(s) 142, 145, 154, 295, 666
PpuMI RGGWCCY 2 cut(s) 428, 596
Psp5II RGGWCCY 2 cut(s) 428, 596
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 2 cut(s) 428, 596
PspPPI RGGWCCY 2 cut(s) 428, 596
PstI CTGCAG 3 cut(s) 45, 154, 651
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 182, 234, 338
SatI GCNGC 5 cut(s) 141, 144, 153, 294, 665
Sau3AI GATC 1 cut(s) 738
Sau96I GGNCC 2 cut(s) 428, 596
SduI GDGCHC 1 cut(s) 676
SfaNI GCATC 1 cut(s) 842
SfcI CTRYAG 3 cut(s) 41, 150, 647
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 2 cut(s) 428, 596
SpeI ACTAGT 1 cut(s) 682
Sse9I AATT 7 cut(s) 12, 100, 111, 166, 335, 477, 788
SsiI CCGC 3 cut(s) 64, 116, 177
SspMI CTAG 3 cut(s) 432, 683, 753
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 2 cut(s) 278, 423
TaiI ACGT 1 cut(s) 762
TaqI TCGA 2 cut(s) 383, 741
TasI AATT 7 cut(s) 12, 100, 111, 166, 335, 477, 788
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 182, 234, 338
Tru9I TTAA 3 cut(s) 182, 234, 338
TscAI CASTG 4 cut(s) 306, 454, 622, 727
TseFI GTSAC 2 cut(s) 278, 330
TseI GCWGC 5 cut(s) 140, 143, 152, 293, 664
Tsp45I GTSAC 2 cut(s) 278, 330
TspGWI ACGGA 2 cut(s) 177, 452
TspRI CASTG 4 cut(s) 306, 454, 622, 727
VpaK11BI GGWCC 2 cut(s) 428, 596
XmaJI CCTAGG 1 cut(s) 431
XspI CTAG 3 cut(s) 432, 683, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.