pycom17g27650

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012266
Physical Location & Seq
Forward (+)
25777341 .. 25780615
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g27650.4

Sequence Viewer

Length: 897 bp
ATGTATTTTGGTACTTGTCTGCTGGCCTGTACTGTACTAATCCCTTTGGAGGGGTCACCCAATGGGGTTTTCCAGCTTTGCTTCTCCCTCTGCTTCTTCTGCTCGAAAAACCCTGAACCCAAATATTCAAACCAAAACTCATTTTCCACATTGCAAATGGCTCTGGCGATTTCCCATGCTTTTCTCTGCCCCAAATTGCAATTTTCCCAGAGGAATTTCCGCTCCAATGTCCCAGAGTTGAGGCTGCCACCCTCTTTTGTCAGAACAATTCCACAGAATAGAAGGGTAATTTGTGCTGCTGCGTCTGCGGCTGGAAGTTCTAATCCGGATAGTGATTTGAATCCATATGAGGTTCTCGGTGTGAGCCCATTTGAGGGATTTGACATGATCAAGGCAGCATATACCAAAAAACATAAGGAGGCCGTAAGGAGTGGTGATGATGCAACTGCTGCTAGACTGGAGAAAGCATATGACAAAGTTATGATGGCACAGCTAACTAATAGGAAGAAAGGTGTAACCTTTGGTTCCTTCAAGGTTTCAAAAGACATCAAATATGCTGATAAGCAACCAATTGTACCATGGGGGCCTAGGTTCACCAAGTCTTCTGTACAAGATATGCGCATCAACCTGGCAATATCTGCTGTATTTGTAGCTTGGCTTCTTATCAAGCGGAATGCTGAATATAAACCCCTGCAATTTTTAACTTTTGCATTTGTTTATCGGATTTTCGAGAAGTTGAAATCCTTTGAACCGCCTGTATCTCCAACATATACAGAAGATGGTGAGGATGCAGGGAGGGGATTGCGAATGGGAAAACGGCTGCTCCGTTCACTTGCACTAGTGTTTGGCTGTATCGCAATTGCTTCTGTGGTATATTATGCTACACTACTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

299

Amino Acids

33.31

Weight (kDa)

9.51

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 620
AccBSI CCGCTC 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 4 cut(s) 220, 308, 670, 752
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 5 cut(s) 13, 31, 36, 576, 609
AfiI CCNNNNNNNGG 4 cut(s) 49, 50, 373, 374
AgsI TTSAA 6 cut(s) 129, 340, 532, 540, 739, 749
AhlI ACTAGT 1 cut(s) 838
AjnI CCWGG 1 cut(s) 627
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 3 cut(s) 76, 493, 653
AluI AGCT 3 cut(s) 76, 493, 653
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 3 cut(s) 24, 420, 584
ApeKI GCWGC 6 cut(s) 244, 296, 299, 395, 449, 820
ApoI RAATTY 1 cut(s) 214
AspA2I CCTAGG 1 cut(s) 587
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 4 cut(s) 48, 446, 586, 794
AvrII CCTAGG 1 cut(s) 587
BanII GRGCYC 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BbsI GAAGAC 1 cut(s) 594
BbvI GCAGC 6 cut(s) 231, 283, 286, 407, 436, 807
BccI CCATC 2 cut(s) 478, 773
BceAI ACGGC 2 cut(s) 407, 833
BciT130I CCWGG 1 cut(s) 629
BclI TGATCA 1 cut(s) 387
BcuI ACTAGT 1 cut(s) 838
BfaI CTAG 3 cut(s) 453, 588, 839
BisI GCNGC 7 cut(s) 245, 297, 300, 309, 396, 450, 821
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 7 cut(s) 246, 298, 301, 310, 397, 451, 822
Bme1390I CCNGG 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 526, 585
BmrFI CCNGG 1 cut(s) 629
BmsI GCATC 3 cut(s) 430, 630, 778
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 578, 587
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 50, 373, 374
Bse1I ACTGG 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 578, 587
BseGI GGATG 1 cut(s) 793
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 4 cut(s) 49, 50, 373, 374
BseMI GCAATG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 462
BseXI GCAGC 6 cut(s) 231, 283, 286, 407, 436, 807
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 3 cut(s) 26, 422, 586
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 4 cut(s) 49, 50, 373, 374
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 3 cut(s) 26, 422, 586
Bsp1286I GDGCHC 1 cut(s) 368
Bsp13I TCCGGA 1 cut(s) 325
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 4 cut(s) 220, 308, 670, 752
BspANI GGCC 3 cut(s) 26, 422, 586
BspEI TCCGGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 526, 585
BsrBI CCGCTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 578, 587
BssMI GATC 1 cut(s) 387
BssT1I CCWWGG 2 cut(s) 578, 587
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 1 cut(s) 34
BstAPI GCANNNNNTGC 2 cut(s) 449, 638
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 578
BstEII GGTNACC 1 cut(s) 54
BstF5I GGATG 1 cut(s) 793
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 1 cut(s) 390
BstMBI GATC 1 cut(s) 387
BstMWI GCNNNNNNNGC 5 cut(s) 99, 305, 308, 449, 638
BstNI CCWGG 1 cut(s) 629
BstPI GGTNACC 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 627
BstV1I GCAGC 6 cut(s) 231, 283, 286, 407, 436, 807
BstV2I GAAGAC 1 cut(s) 594
BsuRI GGCC 3 cut(s) 26, 422, 586
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 892
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 584
CseI GACGC 1 cut(s) 291
Csp6I GTAC 5 cut(s) 12, 30, 35, 575, 608
CviAII CATG 3 cut(s) 176, 385, 579
CviQI GTAC 5 cut(s) 12, 30, 35, 575, 608
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
Eco130I CCWWGG 2 cut(s) 578, 587
Eco24I GRGCYC 1 cut(s) 368
Eco91I GGTNACC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 2 cut(s) 578, 587
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 2 cut(s) 578, 587
FaeI CATG 3 cut(s) 179, 388, 582
FaqI GGGAC 1 cut(s) 215
FatI CATG 3 cut(s) 175, 384, 578
FauNDI CATATG 2 cut(s) 346, 469
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 7 cut(s) 245, 297, 300, 309, 396, 450, 821
FokI GGATG 1 cut(s) 800
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 7 cut(s) 245, 297, 300, 309, 396, 450, 821
FspAI RTGCGCAY 1 cut(s) 620
FspBI CTAG 3 cut(s) 453, 588, 839
FspI TGCGCA 1 cut(s) 620
GlaI GCGC 1 cut(s) 620
GluI GCNGC 7 cut(s) 245, 297, 300, 309, 396, 450, 821
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 3 cut(s) 26, 422, 586
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 291
HhaI GCGC 1 cut(s) 621
Hin1II CATG 3 cut(s) 179, 388, 582
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HinfI GANTC 1 cut(s) 340
HpaII CCGG 1 cut(s) 326
HphI GGTGA 4 cut(s) 48, 446, 586, 794
Hpy166II GTNNAC 2 cut(s) 594, 830
Hpy188I TCNGA 2 cut(s) 263, 723
Hpy188III TCNNGA 2 cut(s) 326, 730
Hpy8I GTNNAC 2 cut(s) 594, 830
HpyAV CCTTC 2 cut(s) 276, 538
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 8 cut(s) 154, 199, 443, 694, 710, 791, 836, 892
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 305, 308, 449, 638
Hsp92II CATG 3 cut(s) 179, 388, 582
HspAI GCGC 1 cut(s) 619
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 1 cut(s) 387
LmnI GCTCC 2 cut(s) 227, 828
Lsp1109I GCAGC 6 cut(s) 231, 283, 286, 407, 436, 807
LweI GCATC 3 cut(s) 430, 630, 778
MaeI CTAG 3 cut(s) 453, 588, 839
MaeIII GTNAC 2 cut(s) 54, 514
MalI GATC 1 cut(s) 389
MbiI CCGCTC 1 cut(s) 222
MboI GATC 1 cut(s) 387
MboII GAAGA 4 cut(s) 88, 517, 594, 788
MfeI CAATTG 2 cut(s) 570, 858
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 8 cut(s) 194, 200, 214, 267, 288, 570, 695, 858
MmeI TCCRAC 1 cut(s) 788
MroI TCCGGA 1 cut(s) 325
MseI TTAA 1 cut(s) 701
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 629
MunI CAATTG 2 cut(s) 570, 858
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 1 cut(s) 629
MwoI GCNNNNNNNGC 5 cut(s) 99, 305, 308, 449, 638
NcoI CCATGG 1 cut(s) 578
NdeI CATATG 2 cut(s) 346, 469
NdeII GATC 1 cut(s) 387
NlaIII CATG 3 cut(s) 179, 388, 582
NlaIV GGNNCC 2 cut(s) 526, 585
NmuCI GTSAC 1 cut(s) 54
NsbI TGCGCA 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 823
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 7 cut(s) 246, 298, 301, 310, 397, 451, 822
Psp6I CCWGG 1 cut(s) 627
PspEI GGTNACC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 2 cut(s) 526, 585
PspPI GGNCC 1 cut(s) 584
RsaI GTAC 5 cut(s) 13, 31, 36, 576, 609
RsaNI GTAC 5 cut(s) 12, 30, 35, 575, 608
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 7 cut(s) 245, 297, 300, 309, 396, 450, 821
Sau3AI GATC 1 cut(s) 387
Sau96I GGNCC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 629
SduI GDGCHC 1 cut(s) 368
SetI ASST 9 cut(s) 78, 354, 495, 514, 521, 537, 593, 630, 655
SfaNI GCATC 3 cut(s) 430, 630, 778
SpeI ACTAGT 1 cut(s) 838
Sse9I AATT 8 cut(s) 194, 200, 214, 267, 288, 570, 695, 858
SsiI CCGC 4 cut(s) 220, 308, 670, 752
SspI AATATT 1 cut(s) 125
SspMI CTAG 3 cut(s) 453, 588, 839
StyD4I CCNGG 1 cut(s) 627
StyI CCWWGG 2 cut(s) 578, 587
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 104, 729
TasI AATT 8 cut(s) 194, 200, 214, 267, 288, 570, 695, 858
TatI WGTACW 3 cut(s) 29, 34, 607
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 6 cut(s) 244, 296, 299, 395, 449, 820
Tsp45I GTSAC 1 cut(s) 54
TspGWI ACGGA 1 cut(s) 815
XapI RAATTY 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 2 cut(s) 154, 576
XmaJI CCTAGG 1 cut(s) 587
XspI CTAG 3 cut(s) 453, 588, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.