Rroxscaffold_6G00427630

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012266
Physical Location & Seq
Reverse (-)
48208580 .. 48213790
5211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427630.1

Sequence Viewer

Length: 885 bp
ATGGCTTTAGCAATTTCCCATGCTCTTCTCTGCCCCAAATTGCAGTTTTCCCAAAGGAATTTCCGCCCTAAAGCTCCAGCCCTGAGTTTCTCACCTCCCAATTTCAGAGTTGTTGGTAGAGGTAGAGTTAATGGGTTTGTGAGAGCAATTCCACAGAATAGAAGGATAGTGTTGGCCGCTGCATCTGCAGCTGGAAGTTCTAATTCAGACAGTGGTTTGAATCCGTATGAGGTTCTCGGTGTGAACCCGATTGAGGGGTTTGACATGGTCAAGGCAGCGTATAAGAAAAAACACAAGGAGGCTGTAAGCAATGGTGATGAAGAAGCTGCTGCTAGACTGGAGAAAGCATATGACAAACTTATGATGGCACAACTAACAAACAGGAAGAAAGGCTTGACATTTGGTTCTTTTAAGGTTTCAAAGGATATAAAATATGCCGATAAGCAACCGATTGTACCATGGGGGCCTAGGTTCACCAAATCCAGTGTACAAGATATGCGTATCAATCTGGCAATCTCTGCCGTATTTGTAGCTTGGCTTGTTATTGTGCAAAACGCTGACTATAAACCCCTCCAATTTTTATCCTTTGCATTCGTTTATCGCATTTTTGAGAAGTTGAAGACCTTTGAAAAACCTGTAACTCCAACATACACAGAAGATGGTGAGGAAGTGGGGAAGGGACTGCAGATGGGAAAACGGCTGCTTCGTGCTCTTGGACTAGTCTTTGGCTGTATTGCTGTGGCTTCTCTGGCATACACTGGTTCTCTGAATGTGATCGAGTATATAGCTAGTTACGTTCCTGCTATTCTTTACAATAACCAGGAATTGATAATCACCTCAGTAACTGCAGTCATGCTCTACGTTATGGCATCATATTACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

294

Amino Acids

32.58

Weight (kDa)

9.76

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 87 - 209 3.3e-10 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 177
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 456, 489
AfiI CCNNNNNNNGG 2 cut(s) 253, 254
AgsI TTSAA 4 cut(s) 220, 420, 619, 629
AhlI ACTAGT 1 cut(s) 718
AjnI CCWGG 1 cut(s) 819
AluBI AGCT 5 cut(s) 74, 191, 326, 533, 788
AluI AGCT 5 cut(s) 74, 191, 326, 533, 788
Alw21I GWGCWC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 2 cut(s) 174, 464
ApeKI GCWGC 6 cut(s) 179, 188, 275, 326, 329, 700
ApoI RAATTY 1 cut(s) 58
AspA2I CCTAGG 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 5 cut(s) 84, 326, 466, 674, 826
AvrII CCTAGG 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 6 cut(s) 166, 200, 287, 313, 316, 687
BccI CCATC 3 cut(s) 358, 653, 682
BceAI ACGGC 2 cut(s) 506, 713
BciT130I CCWGG 1 cut(s) 821
BcuI ACTAGT 1 cut(s) 718
BfaI CTAG 4 cut(s) 333, 468, 719, 789
BfmI CTRYAG 3 cut(s) 186, 683, 846
BisI GCNGC 7 cut(s) 177, 180, 189, 276, 327, 330, 701
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 7 cut(s) 178, 181, 190, 277, 328, 331, 702
Bme1390I CCNGG 1 cut(s) 821
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 1 cut(s) 821
BmsI GCATC 2 cut(s) 191, 878
BpiI GAAGAC 1 cut(s) 626
BpmI CTGGAG 2 cut(s) 60, 359
BsaJI CCNNGG 2 cut(s) 458, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 254
Bse1I ACTGG 3 cut(s) 342, 483, 763
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 2 cut(s) 458, 467
BseLI CCNNNNNNNGG 2 cut(s) 253, 254
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 74, 852
BseNI ACTGG 3 cut(s) 342, 483, 763
BseXI GCAGC 6 cut(s) 166, 200, 287, 313, 316, 687
BshFI GGCC 2 cut(s) 176, 466
BsiHKAI GWGCWC 1 cut(s) 712
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 2 cut(s) 253, 254
BsmFI GGGAC 1 cut(s) 693
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 176, 466
Bsp1286I GDGCHC 1 cut(s) 712
Bsp1407I TGTACA 1 cut(s) 487
Bsp143I GATC 1 cut(s) 774
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 2 cut(s) 64, 177
BspANI GGCC 2 cut(s) 176, 466
BspCNI CTCAG 2 cut(s) 75, 851
BspLI GGNNCC 1 cut(s) 465
BspMAI CTGCAG 3 cut(s) 190, 687, 850
BspQI GCTCTTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 487
BsrI ACTGG 3 cut(s) 342, 483, 763
BssECI CCNNGG 2 cut(s) 458, 467
BssMI GATC 1 cut(s) 774
BssT1I CCWWGG 2 cut(s) 458, 467
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 487
BstDEI CTNAG 2 cut(s) 83, 838
BstDSI CCRYGG 1 cut(s) 458
BstKTI GATC 1 cut(s) 777
BstMBI GATC 1 cut(s) 774
BstMWI GCNNNNNNNGC 4 cut(s) 185, 188, 518, 749
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 819
BstSFI CTRYAG 3 cut(s) 186, 683, 846
BstV1I GCAGC 6 cut(s) 166, 200, 287, 313, 316, 687
BstV2I GAAGAC 1 cut(s) 626
BsuRI GGCC 2 cut(s) 176, 466
BtgI CCRYGG 1 cut(s) 458
BtsIMutI CAGTG 3 cut(s) 217, 490, 756
CaiI CAGNNNCTG 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 455, 488
CviAII CATG 4 cut(s) 20, 265, 459, 853
CviQI GTAC 2 cut(s) 455, 488
DdeI CTNAG 2 cut(s) 83, 838
DpnI GATC 1 cut(s) 776
DpnII GATC 1 cut(s) 774
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 458, 467
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 2 cut(s) 458, 467
ErhI CCWWGG 2 cut(s) 458, 467
FaeI CATG 4 cut(s) 23, 268, 462, 856
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 693
FatI CATG 4 cut(s) 19, 264, 458, 852
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 7 cut(s) 177, 180, 189, 276, 327, 330, 701
Fsp4HI GCNGC 7 cut(s) 177, 180, 189, 276, 327, 330, 701
FspBI CTAG 4 cut(s) 333, 468, 719, 789
GluI GCNGC 7 cut(s) 177, 180, 189, 276, 327, 330, 701
GsuI CTGGAG 2 cut(s) 60, 359
HaeIII GGCC 2 cut(s) 176, 466
Hin1II CATG 4 cut(s) 23, 268, 462, 856
HinfI GANTC 1 cut(s) 220
HphI GGTGA 5 cut(s) 84, 326, 466, 674, 826
Hpy166II GTNNAC 3 cut(s) 244, 474, 488
Hpy188I TCNGA 3 cut(s) 107, 208, 768
Hpy8I GTNNAC 3 cut(s) 244, 474, 488
HpyAV CCTTC 2 cut(s) 156, 670
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 795, 861
HpyCH4V TGCA 7 cut(s) 43, 182, 188, 550, 590, 685, 848
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 188, 518, 749
HpyF3I CTNAG 2 cut(s) 83, 838
HpySE526I ACGT 2 cut(s) 795, 861
Hsp92II CATG 4 cut(s) 23, 268, 462, 856
Kzo9I GATC 1 cut(s) 774
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 6 cut(s) 166, 200, 287, 313, 316, 687
LweI GCATC 2 cut(s) 191, 878
MaeI CTAG 4 cut(s) 333, 468, 719, 789
MaeII ACGT 2 cut(s) 795, 861
MaeIII GTNAC 3 cut(s) 637, 791, 841
MalI GATC 1 cut(s) 776
MboI GATC 1 cut(s) 774
MboII GAAGA 5 cut(s) 17, 332, 397, 631, 668
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 8 cut(s) 12, 38, 58, 100, 147, 202, 575, 824
MmeI TCCRAC 1 cut(s) 668
MnlI CCTC 8 cut(s) 105, 113, 223, 247, 292, 581, 658, 847
MseI TTAA 2 cut(s) 129, 411
MspA1I CMGCKG 2 cut(s) 179, 191
MspR9I CCNGG 1 cut(s) 821
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 4 cut(s) 185, 188, 518, 749
NcoI CCATGG 1 cut(s) 458
NdeI CATATG 1 cut(s) 349
NdeII GATC 1 cut(s) 774
NlaIII CATG 4 cut(s) 23, 268, 462, 856
NlaIV GGNNCC 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 703
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 7 cut(s) 178, 181, 190, 277, 328, 331, 702
Psp6I CCWGG 1 cut(s) 819
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 1 cut(s) 464
PstI CTGCAG 3 cut(s) 190, 687, 850
PstNI CAGNNNCTG 1 cut(s) 845
PsyI GACNNNGTC 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 456, 489
RsaNI GTAC 2 cut(s) 455, 488
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 129, 411
SatI GCNGC 7 cut(s) 177, 180, 189, 276, 327, 330, 701
Sau3AI GATC 1 cut(s) 774
Sau96I GGNCC 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 821
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 2 cut(s) 191, 878
SfcI CTRYAG 3 cut(s) 186, 683, 846
SpeI ACTAGT 1 cut(s) 718
Sse9I AATT 8 cut(s) 12, 38, 58, 100, 147, 202, 575, 824
SsiI CCGC 2 cut(s) 64, 177
SspMI CTAG 4 cut(s) 333, 468, 719, 789
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 2 cut(s) 458, 467
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 798, 864
TaqI TCGA 1 cut(s) 777
TasI AATT 8 cut(s) 12, 38, 58, 100, 147, 202, 575, 824
TatI WGTACW 1 cut(s) 487
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 129, 411
Tru9I TTAA 2 cut(s) 129, 411
TscAI CASTG 3 cut(s) 217, 490, 763
TseI GCWGC 6 cut(s) 179, 188, 275, 326, 329, 700
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 3 cut(s) 217, 490, 763
Tth111I GACNNNGTC 1 cut(s) 266
XapI RAATTY 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 467
XspI CTAG 4 cut(s) 333, 468, 719, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.