RLG00000025796

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012266
Physical Location & Seq
Forward (+)
48329353 .. 48332577
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025796

Sequence Viewer

Length: 699 bp
ATGGCTTTAGCAATTTCCCATGCTCTTCTCTGCCCCAAATTGCAGTTTCCCCAAAGGAATTTCCGCCCTAACGCTCCAGCCCTGAGTTTCTCACCTCCCAATTTCAGGTCCTCTAATCACTTTTGCAAAGTCGAGTTTTTATGTTCTGGGTTTTATTCAAAATGGTCAAATTCTGGGGCTTTATGTGAAAATGTGGTTGTTGTTAGAGTTTCAGTTGATGGAGCAATTCCACAGAATAGAAGGATAGTGTTGGCCGCTGCATCTGCAGCTGGAAGTTCTAATTCGGACAGTGGTTTGAATCCGTATGAGGTTCTCGGTGTGAACCCGATCGAGGGGTTTGATATGGTCAAGGCAGCATATAAGAAAAAACACAAGGAGGCTCTGGAGAAAGCATACGACAAACTTATGATGGCACAAGTAACAAACAGGAAGAAAGGCTTGACATTTGGTTCTTTCAAGGTTTCAAAGGATATAAAATATGCTGATAAGCAACCGATTGTACCACGGTGGCCTAGGTTCACCAAGTCCAGTGTACAAGATATGCGTATCAACCTGGCAATTTCTGCCGTATTTGTGGATACATCATACATCAATGCTCTTGGCACACACCTGGAAGCATATCTCAGCATTGTGGTGAAAAGATTTTTGATGGATAGGAATTGGTTGCGTCTTGTTAGTTATATATCAGTAAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

233

Amino Acids

25.9

Weight (kDa)

9.83

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 119 - 190 2.2e-06 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 697
AciI CCGC 2 cut(s) 64, 255
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 58, 169
AfaI GTAC 2 cut(s) 501, 534
AfiI CCNNNNNNNGG 3 cut(s) 105, 331, 332
AgsI TTSAA 4 cut(s) 159, 298, 457, 465
AjnI CCWGG 2 cut(s) 552, 609
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AoxI GGCC 2 cut(s) 252, 509
ApeKI GCWGC 3 cut(s) 257, 266, 353
ApoI RAATTY 2 cut(s) 58, 169
AspA2I CCTAGG 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 84, 511, 646
AvaII GGWCC 1 cut(s) 108
AvrII CCTAGG 1 cut(s) 512
BbvI GCAGC 3 cut(s) 244, 278, 365
BccI CCATC 3 cut(s) 212, 403, 643
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 554, 611
BciVI GTATCC 1 cut(s) 571
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 571
BisI GCNGC 4 cut(s) 255, 258, 267, 354
BlnI CCTAGG 1 cut(s) 512
BlsI GCNGC 4 cut(s) 256, 259, 268, 355
Bme1390I CCNGG 2 cut(s) 554, 611
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 554, 611
BmsI GCATC 1 cut(s) 269
BpmI CTGGAG 2 cut(s) 60, 404
BsaJI CCNNGG 2 cut(s) 503, 512
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 331, 332
Bse1I ACTGG 1 cut(s) 528
BseBI CCWGG 2 cut(s) 554, 611
BseDI CCNNGG 2 cut(s) 503, 512
BseLI CCNNNNNNNGG 3 cut(s) 105, 331, 332
BseMII CTCAG 2 cut(s) 74, 637
BseNI ACTGG 1 cut(s) 528
BseXI GCAGC 3 cut(s) 244, 278, 365
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 254, 511
BsiEI CGRYCG 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 105, 331, 332
BsnI GGCC 2 cut(s) 254, 511
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 2 cut(s) 64, 255
BspANI GGCC 2 cut(s) 254, 511
BspCNI CTCAG 2 cut(s) 75, 636
BspMAI CTGCAG 1 cut(s) 268
BspQI GCTCTTC 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 2 cut(s) 503, 512
BssMI GATC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 554, 611
Bst4CI ACNGT 2 cut(s) 290, 507
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 532
BstDEI CTNAG 2 cut(s) 83, 623
BstDSI CCRYGG 1 cut(s) 503
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 263, 266, 563
BstNI CCWGG 2 cut(s) 554, 611
BstSCI CCNGG 2 cut(s) 552, 609
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 244, 278, 365
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 2 cut(s) 254, 511
BtgI CCRYGG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 295, 535
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 500, 533
CviAII CATG 1 cut(s) 20
CviJI RGCY 8 cut(s) 5, 80, 179, 254, 269, 380, 438, 511
CviKI_1 RGCY 8 cut(s) 5, 80, 179, 254, 269, 380, 438, 511
CviQI GTAC 2 cut(s) 500, 533
DdeI CTNAG 2 cut(s) 83, 623
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 552, 609
EcoT14I CCWWGG 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 1 cut(s) 23
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 4 cut(s) 255, 258, 267, 354
Fsp4HI GCNGC 4 cut(s) 255, 258, 267, 354
FspBI CTAG 1 cut(s) 513
GluI GCNGC 4 cut(s) 255, 258, 267, 354
GsuI CTGGAG 2 cut(s) 60, 404
HaeIII GGCC 2 cut(s) 254, 511
HgaI GACGC 1 cut(s) 656
Hin1II CATG 1 cut(s) 23
HinfI GANTC 1 cut(s) 298
HphI GGTGA 3 cut(s) 84, 511, 646
Hpy166II GTNNAC 4 cut(s) 322, 519, 533, 691
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 4 cut(s) 322, 519, 533, 691
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 290, 507
HpyCH4V TGCA 4 cut(s) 43, 126, 260, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 266, 563
HpyF3I CTNAG 2 cut(s) 83, 623
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 1 cut(s) 327
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 79, 221
Lsp1109I GCAGC 3 cut(s) 244, 278, 365
LweI GCATC 1 cut(s) 269
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 418
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 2 cut(s) 17, 442
MluCI AATT 9 cut(s) 12, 38, 58, 100, 169, 225, 280, 558, 658
MnlI CCTC 5 cut(s) 105, 121, 301, 325, 370
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 2 cut(s) 257, 269
MspR9I CCNGG 2 cut(s) 554, 611
MvaI CCWGG 2 cut(s) 554, 611
MwoI GCNNNNNNNGC 3 cut(s) 263, 266, 563
NdeII GATC 1 cut(s) 327
NlaIII CATG 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 4 cut(s) 256, 259, 268, 355
Ple19I CGATCG 1 cut(s) 330
PpuMI RGGWCCY 1 cut(s) 108
PsiI TTATAA 1 cut(s) 697
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 552, 609
PspGI CCWGG 2 cut(s) 552, 609
PspPI GGNCC 1 cut(s) 108
PspPPI RGGWCCY 1 cut(s) 108
PstI CTGCAG 1 cut(s) 268
PvuI CGATCG 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 2 cut(s) 501, 534
RsaNI GTAC 2 cut(s) 500, 533
RseI CAYNNNNRTG 1 cut(s) 632
SapI GCTCTTC 1 cut(s) 30
SatI GCNGC 4 cut(s) 255, 258, 267, 354
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 554, 611
SetI ASST 8 cut(s) 97, 110, 271, 312, 462, 518, 555, 612
SfaNI GCATC 1 cut(s) 269
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 9 cut(s) 12, 38, 58, 100, 169, 225, 280, 558, 658
SsiI CCGC 2 cut(s) 64, 255
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 552, 609
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 2 cut(s) 290, 507
TaqI TCGA 2 cut(s) 132, 330
TasI AATT 9 cut(s) 12, 38, 58, 100, 169, 225, 280, 558, 658
TatI WGTACW 1 cut(s) 532
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 298
TscAI CASTG 2 cut(s) 295, 535
TseI GCWGC 3 cut(s) 257, 266, 353
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 2 cut(s) 295, 535
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 2 cut(s) 58, 169
XmaJI CCTAGG 1 cut(s) 512
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.