MD17G1278900.v1.1

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012266
Physical Location & Seq
Forward (+)
33867960 .. 33872158
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1278900.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGAAGTACAAATCTGTTCACCATTATGGAGCCCAATCCGGCCCAACTGCATCCAGAAGAGTAGCCCATGGGGTTTTCCAGCTTTGCTTCTCTCTCTGCTTCTTCTGCTCGAAAAACCCTGAACCCAAAAACTCAAACCAAAACTCATTTTCCACACTGCAAATGGCTCTGGCGATTTCCCATGCTTTTCTCTGCCCCAAATTGCAATTTTCCCAAAGGAATTTCCGCCCTAACGTCCCAGAGTTGAGGCTGCCACCCTCTTTTGTCAGAACAATTCCACAGAATGGAAGGGTAATTTGTGCTGCTGCGTCTGCGGCTGGAAGTTCTAATCCGGATAGTGATTTGAATCCATATGAGGTTCTCGGTGTGAGCCCAATTGAGGGATTTGACATGATCAAGGCAGCATATACGAAAAAACATAAGGAGGCCGTAAGGAGCGGTGATGATGCAACTGCTGCTAGACTGGAGAAAGCATATGACAAAGTTATGATGGCCCAGCTAACTAATAGGAAGAAAGGTGTAACCTTTGGTTCCTTCAAGGTTTCAAAAGACATCAAATATGCTGATAAGCAACCAATTGTACCATGGGGGCCTAGGTTCACCAAGTCTTCTGTACAAGATATGCGCATCAACCTGGCAATATCTGCTGTATTTGTAGCTTGGCTTCTTATCAAGCGGAATGCTGAATATAAACCCCTGCAATTTTTAACTTTTGCATTTGTTTATCGGATTTTTGAGAAGTTGAAATCCTTTGAACCGCCTGTATCTCCAACATATACAGAAGATGGTGAGGATGCAGGGAGGGGATTGCGAATGGGAAAACGGCTGCTCCGTTCACTTGCACTAGTGTTTGGCTGTATCGCAATTGCTTCTGTGGGATACACTACCGCACTGAATTTGATCGAGTATATGGGTAGCTACATTCCTGCCGCTCTTTACAATAACCAGGAGTTGATAATCACTTCAGCAACCGCATTCATGCTCTACATTATGGCATCGTATTATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

337

Amino Acids

37.5

Weight (kDa)

9.65

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 129 - 245 1.5e-09 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 626
AccB7I CCANNNNNTGG 1 cut(s) 284
AccBSI CCGCTC 2 cut(s) 438, 932
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 8 cut(s) 226, 314, 438, 676, 758, 888, 930, 972
AcsI RAATTY 2 cut(s) 220, 895
AcuI CTGAAG 1 cut(s) 948
AfaI GTAC 3 cut(s) 8, 582, 615
AfiI CCNNNNNNNGG 3 cut(s) 284, 379, 380
AgsI TTSAA 5 cut(s) 346, 538, 546, 745, 755
AhlI ACTAGT 1 cut(s) 844
AjnI CCWGG 2 cut(s) 633, 945
AluBI AGCT 4 cut(s) 82, 499, 659, 918
AluI AGCT 4 cut(s) 82, 499, 659, 918
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 4 cut(s) 40, 426, 492, 590
ApeKI GCWGC 6 cut(s) 250, 302, 305, 401, 455, 826
ApoI RAATTY 2 cut(s) 220, 895
AspA2I CCTAGG 1 cut(s) 593
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 3 cut(s) 41, 493, 590
AsuHPI GGTGA 4 cut(s) 11, 452, 592, 800
AvrII CCTAGG 1 cut(s) 593
BanII GRGCYC 2 cut(s) 34, 374
BarI GAAGNNNNNNTAC 2 cut(s) 648, 680
BbsI GAAGAC 1 cut(s) 600
BbvI GCAGC 6 cut(s) 237, 289, 292, 413, 442, 813
BccI CCATC 2 cut(s) 484, 779
BceAI ACGGC 2 cut(s) 413, 839
BciT130I CCWGG 2 cut(s) 635, 947
BciVI GTATCC 1 cut(s) 872
BclI TGATCA 1 cut(s) 393
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 3 cut(s) 459, 594, 845
BfuI GTATCC 1 cut(s) 872
BisI GCNGC 8 cut(s) 251, 303, 306, 315, 402, 456, 827, 930
BlnI CCTAGG 1 cut(s) 593
BlsI GCNGC 8 cut(s) 252, 304, 307, 316, 403, 457, 828, 931
Bme1390I CCNGG 2 cut(s) 635, 947
BmgT120I GGNCC 3 cut(s) 41, 493, 590
BmiI GGNNCC 3 cut(s) 31, 532, 591
BmrFI CCNGG 2 cut(s) 635, 947
BmsI GCATC 5 cut(s) 59, 436, 636, 784, 1004
BpiI GAAGAC 1 cut(s) 600
BpmI CTGGAG 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 67, 584, 593
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 379, 380
Bse1I ACTGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 2 cut(s) 635, 947
BseDI CCNNGG 3 cut(s) 67, 584, 593
BseGI GGATG 2 cut(s) 50, 799
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 284, 379, 380
BseNI ACTGG 1 cut(s) 468
BseXI GCAGC 6 cut(s) 237, 289, 292, 413, 442, 813
BseYI CCCAGC 1 cut(s) 495
BshFI GGCC 4 cut(s) 42, 428, 494, 592
BsiSI CCGG 2 cut(s) 39, 332
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 284, 379, 380
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 2 cut(s) 685, 974
BsnI GGCC 4 cut(s) 42, 428, 494, 592
Bsp1286I GDGCHC 2 cut(s) 34, 374
Bsp13I TCCGGA 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 2 cut(s) 393, 900
Bsp19I CCATGG 2 cut(s) 67, 584
BspACI CCGC 8 cut(s) 226, 314, 438, 676, 758, 888, 930, 972
BspANI GGCC 4 cut(s) 42, 428, 494, 592
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 31, 532, 591
BsrBI CCGCTC 2 cut(s) 438, 932
BsrGI TGTACA 1 cut(s) 613
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 67, 584, 593
BssMI GATC 2 cut(s) 393, 900
BssT1I CCWWGG 3 cut(s) 67, 584, 593
Bst2UI CCWGG 2 cut(s) 635, 947
Bst6I CTCTTC 1 cut(s) 52
BstAPI GCANNNNNTGC 2 cut(s) 455, 644
BstAUI TGTACA 1 cut(s) 613
BstDSI CCRYGG 2 cut(s) 67, 584
BstF5I GGATG 2 cut(s) 50, 799
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 2 cut(s) 396, 903
BstMBI GATC 2 cut(s) 393, 900
BstMWI GCNNNNNNNGC 5 cut(s) 105, 311, 314, 455, 644
BstNI CCWGG 2 cut(s) 635, 947
BstSCI CCNGG 2 cut(s) 633, 945
BstV1I GCAGC 6 cut(s) 237, 289, 292, 413, 442, 813
BstV2I GAAGAC 1 cut(s) 600
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 4 cut(s) 42, 428, 494, 592
BtgI CCRYGG 2 cut(s) 67, 584
BtsCI GGATG 2 cut(s) 50, 799
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 155, 890
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 3 cut(s) 41, 493, 590
CseI GACGC 1 cut(s) 297
Csp6I GTAC 3 cut(s) 7, 581, 614
CviAII CATG 5 cut(s) 68, 182, 391, 585, 979
CviQI GTAC 3 cut(s) 7, 581, 614
DpnI GATC 2 cut(s) 395, 902
DpnII GATC 2 cut(s) 393, 900
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 215
Eco130I CCWWGG 3 cut(s) 67, 584, 593
Eco24I GRGCYC 2 cut(s) 34, 374
Eco57I CTGAAG 1 cut(s) 948
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 633, 945
EcoT14I CCWWGG 3 cut(s) 67, 584, 593
EcoT38I GRGCYC 2 cut(s) 34, 374
ErhI CCWWGG 3 cut(s) 67, 584, 593
FaeI CATG 5 cut(s) 71, 185, 394, 588, 982
FaqI GGGAC 1 cut(s) 221
FatI CATG 5 cut(s) 67, 181, 390, 584, 978
FauNDI CATATG 2 cut(s) 352, 475
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 8 cut(s) 251, 303, 306, 315, 402, 456, 827, 930
FokI GGATG 2 cut(s) 37, 806
FriOI GRGCYC 2 cut(s) 34, 374
Fsp4HI GCNGC 8 cut(s) 251, 303, 306, 315, 402, 456, 827, 930
FspAI RTGCGCAY 1 cut(s) 626
FspBI CTAG 3 cut(s) 459, 594, 845
FspI TGCGCA 1 cut(s) 626
GlaI GCGC 1 cut(s) 626
GluI GCNGC 8 cut(s) 251, 303, 306, 315, 402, 456, 827, 930
GsaI CCCAGC 1 cut(s) 499
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 4 cut(s) 42, 428, 494, 592
HapII CCGG 2 cut(s) 39, 332
HgaI GACGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 627
Hin1II CATG 5 cut(s) 71, 185, 394, 588, 982
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HinfI GANTC 1 cut(s) 346
HpaII CCGG 2 cut(s) 39, 332
HphI GGTGA 4 cut(s) 11, 452, 592, 800
Hpy166II GTNNAC 3 cut(s) 19, 600, 836
Hpy188I TCNGA 2 cut(s) 269, 729
Hpy188III TCNNGA 2 cut(s) 54, 332
Hpy8I GTNNAC 3 cut(s) 19, 600, 836
HpyAV CCTTC 2 cut(s) 282, 544
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 8 cut(s) 50, 160, 205, 449, 700, 716, 797, 842
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 311, 314, 455, 644
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 5 cut(s) 71, 185, 394, 588, 982
HspAI GCGC 1 cut(s) 625
Kpn2I TCCGGA 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 393, 900
LmnI GCTCC 3 cut(s) 29, 435, 834
Lsp1109I GCAGC 6 cut(s) 237, 289, 292, 413, 442, 813
LweI GCATC 5 cut(s) 59, 436, 636, 784, 1004
MaeI CTAG 3 cut(s) 459, 594, 845
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 520
MalI GATC 2 cut(s) 395, 902
MbiI CCGCTC 2 cut(s) 438, 932
MboI GATC 2 cut(s) 393, 900
MboII GAAGA 5 cut(s) 69, 94, 523, 600, 794
MfeI CAATTG 3 cut(s) 375, 576, 864
MhlI GDGCHC 2 cut(s) 34, 374
MmeI TCCRAC 1 cut(s) 794
MnlI CCTC 7 cut(s) 240, 268, 349, 373, 418, 784, 795
MroI TCCGGA 1 cut(s) 331
MseI TTAA 1 cut(s) 707
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 2 cut(s) 39, 332
MspR9I CCNGG 2 cut(s) 635, 947
MunI CAATTG 3 cut(s) 375, 576, 864
Mva1269I GAATGC 2 cut(s) 685, 974
MvaI CCWGG 2 cut(s) 635, 947
MwoI GCNNNNNNNGC 5 cut(s) 105, 311, 314, 455, 644
NcoI CCATGG 2 cut(s) 67, 584
NdeI CATATG 2 cut(s) 352, 475
NdeII GATC 2 cut(s) 393, 900
NlaIII CATG 5 cut(s) 71, 185, 394, 588, 982
NlaIV GGNNCC 3 cut(s) 31, 532, 591
NsbI TGCGCA 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 829
PctI GAATGC 2 cut(s) 685, 974
PfeI GAWTC 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 8 cut(s) 252, 304, 307, 316, 403, 457, 828, 931
Psp6I CCWGG 2 cut(s) 633, 945
PspFI CCCAGC 1 cut(s) 495
PspGI CCWGG 2 cut(s) 633, 945
PspN4I GGNNCC 3 cut(s) 31, 532, 591
PspPI GGNCC 3 cut(s) 41, 493, 590
RsaI GTAC 3 cut(s) 8, 582, 615
RsaNI GTAC 3 cut(s) 7, 581, 614
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 8 cut(s) 251, 303, 306, 315, 402, 456, 827, 930
Sau3AI GATC 2 cut(s) 393, 900
Sau96I GGNCC 3 cut(s) 41, 493, 590
ScrFI CCNGG 2 cut(s) 635, 947
SduI GDGCHC 2 cut(s) 34, 374
SfaNI GCATC 5 cut(s) 59, 436, 636, 784, 1004
SmiMI CAYNNNNRTG 1 cut(s) 24
SpeI ACTAGT 1 cut(s) 844
SsiI CCGC 8 cut(s) 226, 314, 438, 676, 758, 888, 930, 972
SspMI CTAG 3 cut(s) 459, 594, 845
StyD4I CCNGG 2 cut(s) 633, 945
StyI CCWWGG 3 cut(s) 67, 584, 593
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 110, 903
TatI WGTACW 2 cut(s) 6, 613
TauI GCSGC 2 cut(s) 317, 932
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TscAI CASTG 2 cut(s) 162, 897
TseI GCWGC 6 cut(s) 250, 302, 305, 401, 455, 826
TspDTI ATGAA 2 cut(s) 17, 967
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 2 cut(s) 162, 897
Van91I CCANNNNNTGG 1 cut(s) 284
XapI RAATTY 2 cut(s) 220, 895
XcmI CCANNNNNNNNNTGG 2 cut(s) 160, 582
XmaJI CCTAGG 1 cut(s) 593
XspI CTAG 3 cut(s) 459, 594, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.