RchiOBHm_Chr3g0449811

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012266
Physical Location & Seq
Reverse (-)
1488581 .. 1493806
5226 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41716

Sequence Viewer

Length: 849 bp
ATGGCTTTAGCAATTTCCCATGCTCTTCTCTGCCCCAAATTACAGTTTCCCCAAAGGAATTTCCGCCCTAAAGCTCCAGCCCTGAGTTTCTCACCTCCCAATTTCAGAGCAATTCCACAGAATAGAAGGATAGTGTTGGCCGCTGCATCTGCAGCTGGAAGTTCTAATTCAGACAGTGGTTTGAATCCGTATGAGGTTCTCGGTGTGAACCCGATTGAGGGGTTTGACATGGTCAAGGCAGCGTATAAGAAAAAACACAAGGAGGCTGTAAGCAATGGTGATGAAGAAGCTGCTGCTAGACTGGAGAAAGCATATGACAAACTTATGATGGCACAACTAACAAACAGGAAGAAAGGCTTGACATTTGGTTCTTTTAAGGTTTCAAAGGATATAAAATATGCCGATAAGCAACCGATTGTACCATGGGGGCCTAGGTTCACCAAATCCAGTGTACAAGATATGCGTATCAATCTGGCAATCTCTGCCGTATTTGTAGCTTGGCTTGTTATTGTGCAAAACGCTGACTATAAACCCCTCCAATTTTTATCCTTTGCATTCGTTTATCGCATTTTTGAGAAGTTGAAGACCTTTGAAAAACCTGTAACTCCAACATACACAGAAGATGGTGAGGAAGTGGGGAAGGGACTGCAGATGGGAAAACGGCTGCTACGTGCTCTTGGACTAGTCTTTGGCTGTATTGCTGTGGCTTCTCTGGCATACACTGGTTCTCTGAATGTGATCGAGTATATAGCTAGTTACGTTCCTGCTATTCTTTACAATAACCAGGAATTGATAATCACCTCAGTAACTGCAGTCATGCTCTACGTTATGGCATCATATTACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

282

Amino Acids

31.3

Weight (kDa)

9.61

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 75 - 197 3e-10 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 141
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 420, 453
AfiI CCNNNNNNNGG 2 cut(s) 217, 218
AgsI TTSAA 4 cut(s) 184, 384, 583, 593
AhlI ACTAGT 1 cut(s) 682
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 5 cut(s) 74, 155, 290, 497, 752
AluI AGCT 5 cut(s) 74, 155, 290, 497, 752
Alw21I GWGCWC 1 cut(s) 676
AlwNI CAGNNNCTG 1 cut(s) 809
AoxI GGCC 2 cut(s) 138, 428
ApeKI GCWGC 6 cut(s) 143, 152, 239, 290, 293, 664
ApoI RAATTY 1 cut(s) 58
AspA2I CCTAGG 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 5 cut(s) 84, 290, 430, 638, 790
AvrII CCTAGG 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 6 cut(s) 130, 164, 251, 277, 280, 651
BccI CCATC 3 cut(s) 322, 617, 646
BceAI ACGGC 2 cut(s) 470, 677
BciT130I CCWGG 1 cut(s) 785
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 4 cut(s) 297, 432, 683, 753
BfmI CTRYAG 3 cut(s) 150, 647, 810
BisI GCNGC 7 cut(s) 141, 144, 153, 240, 291, 294, 665
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 7 cut(s) 142, 145, 154, 241, 292, 295, 666
Bme1390I CCNGG 1 cut(s) 785
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 2 cut(s) 155, 842
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 2 cut(s) 60, 323
BsaAI YACGTR 1 cut(s) 671
BsaJI CCNNGG 2 cut(s) 422, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 218
Bse1I ACTGG 3 cut(s) 306, 447, 727
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 2 cut(s) 422, 431
BseLI CCNNNNNNNGG 2 cut(s) 217, 218
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 74, 816
BseNI ACTGG 3 cut(s) 306, 447, 727
BseXI GCAGC 6 cut(s) 130, 164, 251, 277, 280, 651
BshFI GGCC 2 cut(s) 140, 430
BsiHKAI GWGCWC 1 cut(s) 676
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 217, 218
BsmFI GGGAC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 2 cut(s) 140, 430
Bsp1286I GDGCHC 1 cut(s) 676
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 1 cut(s) 738
Bsp19I CCATGG 1 cut(s) 422
BspACI CCGC 2 cut(s) 64, 141
BspANI GGCC 2 cut(s) 140, 430
BspCNI CTCAG 2 cut(s) 75, 815
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 3 cut(s) 154, 651, 814
BspQI GCTCTTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 3 cut(s) 306, 447, 727
BssECI CCNNGG 2 cut(s) 422, 431
BssMI GATC 1 cut(s) 738
BssT1I CCWWGG 2 cut(s) 422, 431
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 2 cut(s) 45, 176
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 451
BstBAI YACGTR 1 cut(s) 671
BstDEI CTNAG 2 cut(s) 83, 802
BstDSI CCRYGG 1 cut(s) 422
BstKTI GATC 1 cut(s) 741
BstMBI GATC 1 cut(s) 738
BstMWI GCNNNNNNNGC 4 cut(s) 149, 152, 482, 713
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 3 cut(s) 150, 647, 810
BstV1I GCAGC 6 cut(s) 130, 164, 251, 277, 280, 651
BstV2I GAAGAC 1 cut(s) 590
BsuRI GGCC 2 cut(s) 140, 430
BtgI CCRYGG 1 cut(s) 422
BtsIMutI CAGTG 3 cut(s) 181, 454, 720
CaiI CAGNNNCTG 1 cut(s) 809
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 419, 452
CviAII CATG 4 cut(s) 20, 229, 423, 817
CviQI GTAC 2 cut(s) 419, 452
DdeI CTNAG 2 cut(s) 83, 802
DpnI GATC 1 cut(s) 740
DpnII GATC 1 cut(s) 738
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 422, 431
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 2 cut(s) 422, 431
ErhI CCWWGG 2 cut(s) 422, 431
FaeI CATG 4 cut(s) 23, 232, 426, 820
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 1 cut(s) 657
FatI CATG 4 cut(s) 19, 228, 422, 816
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 7 cut(s) 141, 144, 153, 240, 291, 294, 665
Fsp4HI GCNGC 7 cut(s) 141, 144, 153, 240, 291, 294, 665
FspBI CTAG 4 cut(s) 297, 432, 683, 753
GluI GCNGC 7 cut(s) 141, 144, 153, 240, 291, 294, 665
GsuI CTGGAG 2 cut(s) 60, 323
HaeIII GGCC 2 cut(s) 140, 430
Hin1II CATG 4 cut(s) 23, 232, 426, 820
HinfI GANTC 1 cut(s) 184
HphI GGTGA 5 cut(s) 84, 290, 430, 638, 790
Hpy166II GTNNAC 3 cut(s) 208, 438, 452
Hpy188I TCNGA 3 cut(s) 107, 172, 732
Hpy8I GTNNAC 3 cut(s) 208, 438, 452
HpyAV CCTTC 2 cut(s) 120, 634
HpyCH4III ACNGT 2 cut(s) 45, 176
HpyCH4IV ACGT 3 cut(s) 670, 759, 825
HpyCH4V TGCA 6 cut(s) 146, 152, 514, 554, 649, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 152, 482, 713
HpyF3I CTNAG 2 cut(s) 83, 802
HpySE526I ACGT 3 cut(s) 670, 759, 825
Hsp92II CATG 4 cut(s) 23, 232, 426, 820
Kzo9I GATC 1 cut(s) 738
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 6 cut(s) 130, 164, 251, 277, 280, 651
LweI GCATC 2 cut(s) 155, 842
MaeI CTAG 4 cut(s) 297, 432, 683, 753
MaeII ACGT 3 cut(s) 670, 759, 825
MaeIII GTNAC 3 cut(s) 601, 755, 805
MalI GATC 1 cut(s) 740
MboI GATC 1 cut(s) 738
MboII GAAGA 5 cut(s) 17, 296, 361, 595, 632
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 8 cut(s) 12, 38, 58, 100, 111, 166, 539, 788
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 7 cut(s) 105, 187, 211, 256, 545, 622, 811
MseI TTAA 1 cut(s) 375
MspA1I CMGCKG 2 cut(s) 143, 155
MspR9I CCNGG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 1 cut(s) 785
MwoI GCNNNNNNNGC 4 cut(s) 149, 152, 482, 713
NcoI CCATGG 1 cut(s) 422
NdeI CATATG 1 cut(s) 313
NdeII GATC 1 cut(s) 738
NlaIII CATG 4 cut(s) 23, 232, 426, 820
NlaIV GGNNCC 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 184
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 7 cut(s) 142, 145, 154, 241, 292, 295, 666
Ppu21I YACGTR 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 428
PstI CTGCAG 3 cut(s) 154, 651, 814
PstNI CAGNNNCTG 1 cut(s) 809
PsyI GACNNNGTC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 2 cut(s) 420, 453
RsaNI GTAC 2 cut(s) 419, 452
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 7 cut(s) 141, 144, 153, 240, 291, 294, 665
Sau3AI GATC 1 cut(s) 738
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 1 cut(s) 676
SfaNI GCATC 2 cut(s) 155, 842
SfcI CTRYAG 3 cut(s) 150, 647, 810
SpeI ACTAGT 1 cut(s) 682
Sse9I AATT 8 cut(s) 12, 38, 58, 100, 111, 166, 539, 788
SsiI CCGC 2 cut(s) 64, 141
SspMI CTAG 4 cut(s) 297, 432, 683, 753
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 2 cut(s) 422, 431
TaaI ACNGT 2 cut(s) 45, 176
TaiI ACGT 3 cut(s) 673, 762, 828
TaqI TCGA 1 cut(s) 741
TasI AATT 8 cut(s) 12, 38, 58, 100, 111, 166, 539, 788
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 3 cut(s) 181, 454, 727
TseI GCWGC 6 cut(s) 143, 152, 239, 290, 293, 664
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 3 cut(s) 181, 454, 727
Tth111I GACNNNGTC 1 cut(s) 230
XapI RAATTY 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 431
XspI CTAG 4 cut(s) 297, 432, 683, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.