Rh3DG022100

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012266
Physical Location & Seq
Reverse (-)
1439929 .. 1445489
5561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG022100.1

Sequence Viewer

Length: 636 bp
ATGTTTCCTAGAGCAATTCCACAGAATAGAAGGATAGTGTTGGCCGCTGCAGCTGCAGCTGGAAGTTCTAATTCAGACAGTGGTTTGAATCCGTATGAGGTTCTCGGTGTGAACCCGATTGAGGGGTTTGACATGGTCAAGGCAGCGTATAAGAAAAAACACAAGGAGGCTGTAAGCAATGGTGATGAAGAAGCTGCTGCTAGACTGGAGAAAGCATATGACAAACTTATGATGGCACAACTAACAAACAGGAAGAAAGGCTTGACATTTGGTTCTTTTAAGGTTTCAAAGGATATAAAATATGCCGATAAGCAACCGATTGTACCATGGGGGCCTAGGTTCACCAAATCCAGTGTACAAGATATGCGTATCAATCTGGCAATCTCTGCCGTATTTGTAGCTTGGCTTGTTATTGTGCAAAACGCTGACTATAAACCGCTCCAATTTTTATCCTTTGCATTCGTTTATCGCATTTTTGAGAAGTTGAAGACCTTTGAAAAACCTGTAACTCCAACATACACAGAAGATGGTGAGGAAGTGGGGAAGGGACTGCAGATGGGAAAACGGCTGCTTCGTGCTCTTGGACTAGTCTTTGGCTGTATTGCTGTGGCTTCTCTGGTATATTATCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

211

Amino Acids

23.44

Weight (kDa)

9.59

Isoelectric Point (pI)

25.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 43 - 165 1.4e-10 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 439
AciI CCGC 2 cut(s) 45, 437
AcoI YGGCCR 1 cut(s) 42
AfaI GTAC 2 cut(s) 324, 357
AfiI CCNNNNNNNGG 2 cut(s) 121, 122
AgsI TTSAA 4 cut(s) 88, 288, 487, 497
AhlI ACTAGT 1 cut(s) 586
AluBI AGCT 4 cut(s) 53, 59, 194, 401
AluI AGCT 4 cut(s) 53, 59, 194, 401
Alw21I GWGCWC 1 cut(s) 580
AoxI GGCC 2 cut(s) 42, 332
ApeKI GCWGC 8 cut(s) 47, 50, 53, 56, 143, 194, 197, 568
AspA2I CCTAGG 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 194, 334, 542
AvrII CCTAGG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 8 cut(s) 34, 40, 62, 68, 155, 181, 184, 555
BccI CCATC 3 cut(s) 226, 521, 550
BceAI ACGGC 2 cut(s) 374, 581
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 4 cut(s) 9, 201, 336, 587
BfmI CTRYAG 3 cut(s) 48, 54, 551
BisI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 144, 195, 198, 569
BlnI CCTAGG 1 cut(s) 335
BlsI GCNGC 9 cut(s) 46, 49, 52, 55, 58, 145, 196, 199, 570
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 326, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 122
Bse1I ACTGG 2 cut(s) 210, 351
Bse3DI GCAATG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 326, 335
BseLI CCNNNNNNNGG 2 cut(s) 121, 122
BseMI GCAATG 1 cut(s) 184
BseNI ACTGG 2 cut(s) 210, 351
BseXI GCAGC 8 cut(s) 34, 40, 62, 68, 155, 181, 184, 555
BshFI GGCC 2 cut(s) 44, 334
BsiHKAI GWGCWC 1 cut(s) 580
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 2 cut(s) 121, 122
BsmFI GGGAC 1 cut(s) 561
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 2 cut(s) 44, 334
Bsp1286I GDGCHC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 2 cut(s) 45, 437
BspANI GGCC 2 cut(s) 44, 334
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 3 cut(s) 52, 58, 555
BsrBI CCGCTC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 355
BsrI ACTGG 2 cut(s) 210, 351
BssECI CCNNGG 2 cut(s) 326, 335
BssT1I CCWWGG 2 cut(s) 326, 335
Bst4CI ACNGT 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 355
BstDSI CCRYGG 1 cut(s) 326
BstMWI GCNNNNNNNGC 4 cut(s) 50, 53, 56, 386
BstSFI CTRYAG 3 cut(s) 48, 54, 551
BstV1I GCAGC 8 cut(s) 34, 40, 62, 68, 155, 181, 184, 555
BstV2I GAAGAC 1 cut(s) 494
BsuRI GGCC 2 cut(s) 44, 334
BtgI CCRYGG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 85, 358
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 323, 356
CviAII CATG 2 cut(s) 133, 327
CviQI GTAC 2 cut(s) 323, 356
EaeI YGGCCR 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 326, 335
EcoO109I RGGNCCY 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 326, 335
ErhI CCWWGG 2 cut(s) 326, 335
FaeI CATG 2 cut(s) 136, 330
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 561
FatI CATG 2 cut(s) 132, 326
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 144, 195, 198, 569
Fsp4HI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 144, 195, 198, 569
FspBI CTAG 4 cut(s) 9, 201, 336, 587
GluI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 144, 195, 198, 569
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 44, 334
Hin1II CATG 2 cut(s) 136, 330
HinfI GANTC 1 cut(s) 88
HphI GGTGA 3 cut(s) 194, 334, 542
Hpy166II GTNNAC 3 cut(s) 112, 342, 356
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 3 cut(s) 112, 342, 356
HpyAV CCTTC 2 cut(s) 24, 538
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 5 cut(s) 50, 56, 418, 458, 553
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 53, 56, 386
Hsp92II CATG 2 cut(s) 136, 330
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 7 cut(s) 45, 191, 235, 362, 364, 516, 602
Lsp1109I GCAGC 8 cut(s) 34, 40, 62, 68, 155, 181, 184, 555
MaeI CTAG 4 cut(s) 9, 201, 336, 587
MaeIII GTNAC 1 cut(s) 505
MbiI CCGCTC 1 cut(s) 439
MboII GAAGA 4 cut(s) 200, 265, 499, 536
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 3 cut(s) 15, 70, 443
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 4 cut(s) 91, 115, 160, 526
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 3 cut(s) 47, 53, 59
Mva1269I GAATGC 1 cut(s) 458
MwoI GCNNNNNNNGC 4 cut(s) 50, 53, 56, 386
NcoI CCATGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 217
NlaIII CATG 2 cut(s) 136, 330
NlaIV GGNNCC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 571
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 88
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 9 cut(s) 46, 49, 52, 55, 58, 145, 196, 199, 570
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 332
PstI CTGCAG 3 cut(s) 52, 58, 555
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 2 cut(s) 53, 59
RsaI GTAC 2 cut(s) 324, 357
RsaNI GTAC 2 cut(s) 323, 356
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 144, 195, 198, 569
Sau96I GGNCC 1 cut(s) 332
SduI GDGCHC 1 cut(s) 580
SetI ASST 9 cut(s) 55, 61, 102, 196, 285, 341, 403, 494, 505
SfcI CTRYAG 3 cut(s) 48, 54, 551
SpeI ACTAGT 1 cut(s) 586
Sse9I AATT 3 cut(s) 15, 70, 443
SsiI CCGC 2 cut(s) 45, 437
SspMI CTAG 4 cut(s) 9, 201, 336, 587
StyI CCWWGG 2 cut(s) 326, 335
TaaI ACNGT 1 cut(s) 80
TasI AATT 3 cut(s) 15, 70, 443
TatI WGTACW 1 cut(s) 355
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 85, 358
TseI GCWGC 8 cut(s) 47, 50, 53, 56, 143, 194, 197, 568
TspDTI ATGAA 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 85, 358
Tth111I GACNNNGTC 1 cut(s) 134
XmaJI CCTAGG 1 cut(s) 335
XspI CTAG 4 cut(s) 9, 201, 336, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.