Rorug02G0623500

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012266
Physical Location & Seq
Forward (+)
73978588 .. 73980735
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0623500.1

Sequence Viewer

Length: 465 bp
ATGGCTTCGTCTAGTAGTTACTCATTATCCTGCAATTCTCCATGTGCTGCGTGCAAGTTCTTGAGGAGAAAATGCATGCCGGATTGTGTATTTGCTCCCTACTTCCCACCGGAGGAGCCGCACAAATTTGCCAATGTTCACAAGATATTTGGGGCCAGCAATGTTAGTAAGCTTCTCAATGAAGTGCTCCCTCATCAGAGAGAAGATGCAGTGAACTCTCTTGCCTATGAAGCCGAGGCAAGAATTAAAGATCCGGTGTACGGATGCGTTGGAGCCATCTCAGTCCTCCAAAGGCAAGTCCTTCGCCTTCAGAAGGAACTCGACGCCACTAATGCCGATCTCCTCCGTTATGCCGGCGCTAGCTGCAACCGTGGAACCGGAAGAGGGTCTCATCATGGTCAAAATTCGGGTTTGTATAGCTTCTCTTCTCCATGGAGTAGTACTCATGACCCTTACGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

154

Amino Acids

16.87

Weight (kDa)

8.48

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 111 5.7e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 2 cut(s) 125, 403
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 260, 442
AfiI CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
AluBI AGCT 3 cut(s) 172, 363, 420
AluI AGCT 3 cut(s) 172, 363, 420
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 1 cut(s) 245
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 47, 363
ApoI RAATTY 2 cut(s) 125, 403
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 153
AsuNHI GCTAGC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 34, 350
BccI CCATC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 2 cut(s) 12, 360
BfoI RGCGCY 1 cut(s) 360
BisI GCNGC 3 cut(s) 48, 119, 364
BlsI GCNGC 3 cut(s) 49, 120, 365
BmcAI AGTACT 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 4 cut(s) 117, 154, 274, 376
BmsI GCATC 2 cut(s) 196, 254
BmtI GCTAGC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpuEI CTTGAG 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 234, 370, 431
BsaWI WCCGGW 3 cut(s) 109, 253, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
Bse118I RCCGGY 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 166
BseDI CCNNGG 3 cut(s) 234, 370, 431
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 3 cut(s) 79, 128, 332
BseXI GCAGC 2 cut(s) 34, 350
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 5 cut(s) 80, 110, 254, 354, 378
BslI CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
BsmAI GTCTC 1 cut(s) 393
BsnI GGCC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 250, 337
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 293
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 117, 154, 274, 376
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 234, 370, 431
BssMI GATC 2 cut(s) 250, 337
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 376, 430
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 5 cut(s) 52, 77, 157, 355, 361
BstDEI CTNAG 1 cut(s) 280
BstDSI CCRYGG 2 cut(s) 370, 431
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 2 cut(s) 253, 340
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 250, 337
BstMWI GCNNNNNNNGC 3 cut(s) 230, 332, 363
BstNSI RCATGY 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 34, 350
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 2 cut(s) 370, 431
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 5 cut(s) 52, 77, 157, 355, 361
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 259, 441
CviAII CATG 5 cut(s) 42, 76, 395, 432, 446
CviJI RGCY 8 cut(s) 5, 118, 155, 172, 233, 275, 363, 420
CviKI_1 RGCY 8 cut(s) 5, 118, 155, 172, 233, 275, 363, 420
CviQI GTAC 2 cut(s) 259, 441
DdeI CTNAG 1 cut(s) 280
DpnI GATC 2 cut(s) 252, 339
DpnII GATC 2 cut(s) 250, 337
Eam1104I CTCTTC 2 cut(s) 376, 430
EarI CTCTTC 2 cut(s) 376, 430
Eco130I CCWWGG 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 5 cut(s) 45, 79, 398, 435, 449
FaiI YATR 8 cut(s) 43, 77, 228, 351, 396, 417, 433, 447
FatI CATG 5 cut(s) 41, 75, 394, 431, 445
Fnu4HI GCNGC 3 cut(s) 48, 119, 364
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 48, 119, 364
FspBI CTAG 2 cut(s) 12, 360
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 48, 119, 364
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 1 cut(s) 155
HapII CCGG 5 cut(s) 80, 110, 254, 354, 378
HgaI GACGC 1 cut(s) 332
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 5 cut(s) 45, 79, 398, 435, 449
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 170
HpaII CCGG 5 cut(s) 80, 110, 254, 354, 378
Hpy166II GTNNAC 3 cut(s) 139, 214, 259
Hpy188I TCNGA 2 cut(s) 198, 312
Hpy188III TCNNGA 2 cut(s) 61, 446
Hpy8I GTNNAC 3 cut(s) 139, 214, 259
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 307, 311, 317
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 5 cut(s) 33, 54, 75, 209, 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 332, 363
HpyF3I CTNAG 1 cut(s) 280
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 5 cut(s) 45, 79, 398, 435, 449
HspAI GCGC 1 cut(s) 357
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Kzo9I GATC 2 cut(s) 250, 337
LmnI GCTCC 4 cut(s) 100, 115, 192, 272
LpnPI CCDG 7 cut(s) 43, 93, 123, 169, 267, 367, 391
Lsp1109I GCAGC 2 cut(s) 34, 350
LweI GCATC 2 cut(s) 196, 254
MaeI CTAG 2 cut(s) 12, 360
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 252, 339
MboI GATC 2 cut(s) 250, 337
MboII GAAGA 3 cut(s) 215, 393, 417
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 5 cut(s) 34, 125, 243, 403, 460
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 7 cut(s) 57, 106, 201, 229, 296, 353, 377
Mph1103I ATGCAT 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 353
MseI TTAA 2 cut(s) 246, 463
MspI CCGG 5 cut(s) 80, 110, 254, 354, 378
MwoI GCNNNNNNNGC 3 cut(s) 230, 332, 363
NaeI GCCGGC 1 cut(s) 355
NcoI CCATGG 1 cut(s) 431
NdeII GATC 2 cut(s) 250, 337
NgoMIV GCCGGC 1 cut(s) 353
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 5 cut(s) 45, 79, 398, 435, 449
NlaIV GGNNCC 4 cut(s) 117, 154, 274, 376
NmeAIII GCCGAG 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 1 cut(s) 79
PaeI GCATGC 1 cut(s) 79
PagI TCATGA 1 cut(s) 445
PdiI GCCGGC 1 cut(s) 355
PkrI GCNGC 3 cut(s) 49, 120, 365
PspN4I GGNNCC 4 cut(s) 117, 154, 274, 376
PspPI GGNCC 1 cut(s) 153
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 260, 442
RsaNI GTAC 2 cut(s) 259, 441
SaqAI TTAA 2 cut(s) 246, 463
SatI GCNGC 3 cut(s) 48, 119, 364
Sau3AI GATC 2 cut(s) 250, 337
Sau96I GGNCC 1 cut(s) 153
ScaI AGTACT 1 cut(s) 442
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 174, 365, 422
SfaNI GCATC 2 cut(s) 196, 254
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SphI GCATGC 1 cut(s) 79
Sse9I AATT 5 cut(s) 34, 125, 243, 403, 460
SsiI CCGC 1 cut(s) 119
SspMI CTAG 2 cut(s) 12, 360
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 321
TasI AATT 5 cut(s) 34, 125, 243, 403, 460
TatI WGTACW 1 cut(s) 440
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 246, 463
Tru9I TTAA 2 cut(s) 246, 463
TscAI CASTG 1 cut(s) 216
TseI GCWGC 2 cut(s) 47, 363
TspDTI ATGAA 2 cut(s) 195, 243
TspGWI ACGGA 2 cut(s) 276, 335
TspRI CASTG 1 cut(s) 216
XagI CCTNNNNNAGG 1 cut(s) 311
XapI RAATTY 2 cut(s) 125, 403
XceI RCATGY 1 cut(s) 79
XspI CTAG 2 cut(s) 12, 360
ZrmI AGTACT 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.