pycom09g19360

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012266
Physical Location & Seq
Forward (+)
20200388 .. 20203407
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19360.3

Sequence Viewer

Length: 741 bp
ATGGCTCTGGCGATTTCCCATGCTTTTCTCTACCCCAAATTGCAATTTTCCCAAAGGAATTTCCGCCCTAATGTCCCGGAGTTGAGGCTGCTACCCTCTTTCGTCAGAACAATTCCACAGAATACAAGGGTAATTTGTGCGGCTGCGTCTGCGGCGGGAAGTTCTAATCCGGACGGTGATTTGAATCCATATGAGGTTCTCGGTGTGAGCCCAATTGAGGGATTTGACATGATCAAGGCAGCGTATACAAAAAAACACAAGGAGGCCGTGAGGAGCGGTGATGAAGCAACTGCTGCTAGACTGGAGAAAGCATATGACAAAGTCATGATGGCACAGCTAACTAATAGGAAGAAAGGTGTAACCTTTGGTTCCTTCAAGGTTTCAAAGGACATCAAATATGCTGATAAGCAACCAATTGTACCATGGGGGCCTAGGTTCACCAAGTCTACAGTACAAGATATGCGCATCAACCTGGCAATATCTGCTGTATTTGTAGCTTGGCTTCTTATCAAGCGGAATGCTGAATATAAACCCTTGCAATTTTTAACTTTTGCTTTTGTTTATCGGATTTTTGAGAAGTTGAAATCCTTTGAACCGCCTGTATCTCCAACATATACAGAAGATGGTGAGGATGCAGGGAGGGGACTGCGAATGGGAAAACGACTGCTCCGTTCACTTGCACTAGTGTTTGGCTGTATTGCGATTGCTTCTGTGGTATATTATGTTACACTTGTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

247

Amino Acids

27.57

Weight (kDa)

9.77

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 464
AccBSI CCGCTC 1 cut(s) 276
AccI GTMKAC 2 cut(s) 245, 446
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 7 cut(s) 64, 140, 152, 155, 276, 514, 596
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 3 cut(s) 420, 453, 737
AfiI CCNNNNNNNGG 2 cut(s) 217, 218
AgsI TTSAA 5 cut(s) 184, 376, 384, 583, 593
AhlI ACTAGT 1 cut(s) 682
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 2 cut(s) 337, 497
AluI AGCT 2 cut(s) 337, 497
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 264, 428
ApeKI GCWGC 4 cut(s) 88, 143, 239, 293
ApoI RAATTY 1 cut(s) 58
AspA2I CCTAGG 1 cut(s) 431
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 4 cut(s) 188, 290, 430, 638
AvrII CCTAGG 1 cut(s) 431
BanII GRGCYC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BbvI GCAGC 4 cut(s) 75, 130, 251, 280
BccI CCATC 2 cut(s) 322, 617
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 473
BclI TGATCA 1 cut(s) 231
BcnI CCSGG 1 cut(s) 77
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 3 cut(s) 297, 432, 683
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 6 cut(s) 89, 141, 144, 153, 240, 294
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 6 cut(s) 90, 142, 145, 154, 241, 295
Bme1390I CCNGG 2 cut(s) 77, 473
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 370, 429
BmrFI CCNGG 2 cut(s) 77, 473
BmsI GCATC 2 cut(s) 474, 622
BpmI CTGGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 422, 431
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 218
Bse1I ACTGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 183
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 422, 431
BseGI GGATG 1 cut(s) 637
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 217, 218
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 4 cut(s) 75, 130, 251, 280
BshFI GGCC 2 cut(s) 266, 430
BsiSI CCGG 2 cut(s) 77, 170
BslFI GGGAC 2 cut(s) 59, 657
BslI CCNNNNNNNGG 2 cut(s) 217, 218
BsmFI GGGAC 2 cut(s) 59, 657
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 2 cut(s) 266, 430
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 422
BspACI CCGC 7 cut(s) 64, 140, 152, 155, 276, 514, 596
BspANI GGCC 2 cut(s) 266, 430
BspEI TCCGGA 1 cut(s) 169
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 370, 429
BsrBI CCGCTC 1 cut(s) 276
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 422, 431
BssMI GATC 1 cut(s) 231
BssNAI GTATAC 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 422, 431
Bst1107I GTATAC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 2 cut(s) 176, 451
BstAPI GCANNNNNTGC 2 cut(s) 293, 482
BstDSI CCRYGG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 637
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 4 cut(s) 149, 152, 293, 482
BstNI CCWGG 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 75, 471
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 4 cut(s) 75, 130, 251, 280
BstZ17I GTATAC 1 cut(s) 246
BsuRI GGCC 2 cut(s) 266, 430
BtgI CCRYGG 1 cut(s) 422
BtsCI GGATG 1 cut(s) 637
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 135
Csp6I GTAC 3 cut(s) 419, 452, 736
CviAII CATG 4 cut(s) 20, 229, 325, 423
CviQI GTAC 3 cut(s) 419, 452, 736
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 422, 431
Eco24I GRGCYC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 422, 431
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 2 cut(s) 422, 431
FaeI CATG 4 cut(s) 23, 232, 328, 426
FaqI GGGAC 2 cut(s) 59, 657
FatI CATG 4 cut(s) 19, 228, 324, 422
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 2 cut(s) 190, 313
FbaI TGATCA 1 cut(s) 231
FblI GTMKAC 2 cut(s) 245, 446
Fnu4HI GCNGC 6 cut(s) 89, 141, 144, 153, 240, 294
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 6 cut(s) 89, 141, 144, 153, 240, 294
FspAI RTGCGCAY 1 cut(s) 464
FspBI CTAG 3 cut(s) 297, 432, 683
FspI TGCGCA 1 cut(s) 464
GlaI GCGC 1 cut(s) 464
GluI GCNGC 6 cut(s) 89, 141, 144, 153, 240, 294
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 2 cut(s) 266, 430
HapII CCGG 2 cut(s) 77, 170
HgaI GACGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 465
Hin1II CATG 4 cut(s) 23, 232, 328, 426
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 77, 170
HphI GGTGA 4 cut(s) 188, 290, 430, 638
Hpy166II GTNNAC 5 cut(s) 246, 438, 447, 674, 736
Hpy188I TCNGA 2 cut(s) 107, 567
Hpy188III TCNNGA 2 cut(s) 170, 325
Hpy8I GTNNAC 5 cut(s) 246, 438, 447, 674, 736
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 2 cut(s) 176, 451
HpyCH4V TGCA 4 cut(s) 43, 538, 635, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 152, 293, 482
Hsp92II CATG 4 cut(s) 23, 232, 328, 426
HspAI GCGC 1 cut(s) 463
Kpn2I TCCGGA 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 2 cut(s) 273, 672
LpnPI CCDG 7 cut(s) 90, 183, 287, 458, 485, 612, 621
Lsp1109I GCAGC 4 cut(s) 75, 130, 251, 280
LweI GCATC 2 cut(s) 474, 622
MaeI CTAG 3 cut(s) 297, 432, 683
MaeIII GTNAC 2 cut(s) 358, 724
MalI GATC 1 cut(s) 233
MbiI CCGCTC 1 cut(s) 276
MboI GATC 1 cut(s) 231
MboII GAAGA 2 cut(s) 361, 632
MfeI CAATTG 2 cut(s) 213, 414
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 8 cut(s) 38, 44, 58, 111, 132, 213, 414, 539
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 8 cut(s) 78, 106, 187, 211, 256, 264, 622, 633
MroI TCCGGA 1 cut(s) 169
MseI TTAA 1 cut(s) 545
MspI CCGG 2 cut(s) 77, 170
MspR9I CCNGG 2 cut(s) 77, 473
MunI CAATTG 2 cut(s) 213, 414
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 1 cut(s) 473
MwoI GCNNNNNNNGC 4 cut(s) 149, 152, 293, 482
NciI CCSGG 1 cut(s) 77
NcoI CCATGG 1 cut(s) 422
NdeI CATATG 2 cut(s) 190, 313
NdeII GATC 1 cut(s) 231
NlaIII CATG 4 cut(s) 23, 232, 328, 426
NlaIV GGNNCC 2 cut(s) 370, 429
NsbI TGCGCA 1 cut(s) 464
PagI TCATGA 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PctI GAATGC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 184
PflFI GACNNNGTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 6 cut(s) 90, 142, 145, 154, 241, 295
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 2 cut(s) 370, 429
PspPI GGNCC 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 3 cut(s) 420, 453, 737
RsaNI GTAC 3 cut(s) 419, 452, 736
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 6 cut(s) 89, 141, 144, 153, 240, 294
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 2 cut(s) 77, 473
SduI GDGCHC 1 cut(s) 212
SetI ASST 8 cut(s) 198, 339, 358, 365, 381, 437, 474, 499
SfaNI GCATC 2 cut(s) 474, 622
SfcI CTRYAG 1 cut(s) 447
SpeI ACTAGT 1 cut(s) 682
Sse9I AATT 8 cut(s) 38, 44, 58, 111, 132, 213, 414, 539
SsiI CCGC 7 cut(s) 64, 140, 152, 155, 276, 514, 596
SspMI CTAG 3 cut(s) 297, 432, 683
StyD4I CCNGG 2 cut(s) 75, 471
StyI CCWWGG 2 cut(s) 422, 431
TaaI ACNGT 2 cut(s) 176, 451
TasI AATT 8 cut(s) 38, 44, 58, 111, 132, 213, 414, 539
TatI WGTACW 2 cut(s) 451, 735
TauI GCSGC 2 cut(s) 143, 155
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseI GCWGC 4 cut(s) 88, 143, 239, 293
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 659
Tth111I GACNNNGTC 1 cut(s) 320
XapI RAATTY 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmaJI CCTAGG 1 cut(s) 431
XmiI GTMKAC 2 cut(s) 245, 446
XspI CTAG 3 cut(s) 297, 432, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.