Rh3BG022400

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012266
Physical Location & Seq
Reverse (-)
1439929 .. 1445489
5561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG022400.1

Sequence Viewer

Length: 732 bp
ATGGCTTTAGCAATTTCCCATGCTCTTCTCTGCCCCAAATTGCAGTTTCCCCAAAGGAATTTCCGCCCTAAAGCTCCAGCCCTGAGTTTCTCACCTCCCAATTTCAGAGCAATTCCACAGAATAGAAGGATAGTGTTGGCCGCTGCAGCTGCAGCTGGAAGTTCTAATTCAGACAGTGGTTTGAATCCGTATGAGGTTCTCGGTGTGAACCCGATTGAGGGGTTTGACATGGTCAAGGCAGCGTATAAGAAAAAACACAAGGAGGCTGTAAGCAATGGTGATGAAGAAGCTGCTGCTAGACTGGAGAAAGCATATGACAAACTTATGATGGCACAACTAACAAACAGGAAGAAAGGCTTGACATTTGGTTCTTTTAAGGTTTCAAAGGATATAAAATATGCCGATAAGCAACCGATTGTACCATGGGGGCCTAGGTTCACCAAATCCAGTGTACAAGATATGCGTATCAATCTGGCAATCTCTGCCGTATTTGTAGCTTGGCTTGTTATTGTGCAAAACGCTGACTATAAACCGCTCCAATTTTTATCCTTTGCATTCGTTTATCGCATTTTTGAGAAGTTGAAGACCTTTGAAAAACCTGTAACTCCAACATACACAGAAGATGGTGAGGAAGTGGGGAAGGGACTGCAGATGGGAAAACGGCTGCTTCGTGCTCTTGGACTAGTCTTTGGCTGTATTGCTGTGGCTTCTCTGGTATATTATCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

243

Amino Acids

26.95

Weight (kDa)

9.75

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 75 - 197 2.1e-10 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 535
AciI CCGC 3 cut(s) 64, 141, 533
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 420, 453
AfiI CCNNNNNNNGG 2 cut(s) 217, 218
AgsI TTSAA 4 cut(s) 184, 384, 583, 593
AhlI ACTAGT 1 cut(s) 682
AluBI AGCT 5 cut(s) 74, 149, 155, 290, 497
AluI AGCT 5 cut(s) 74, 149, 155, 290, 497
Alw21I GWGCWC 1 cut(s) 676
AoxI GGCC 2 cut(s) 138, 428
ApeKI GCWGC 8 cut(s) 143, 146, 149, 152, 239, 290, 293, 664
ApoI RAATTY 1 cut(s) 58
AspA2I CCTAGG 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 4 cut(s) 84, 290, 430, 638
AvrII CCTAGG 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 8 cut(s) 130, 136, 158, 164, 251, 277, 280, 651
BccI CCATC 3 cut(s) 322, 617, 646
BceAI ACGGC 2 cut(s) 470, 677
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 3 cut(s) 297, 432, 683
BfmI CTRYAG 3 cut(s) 144, 150, 647
BisI GCNGC 9 cut(s) 141, 144, 147, 150, 153, 240, 291, 294, 665
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 9 cut(s) 142, 145, 148, 151, 154, 241, 292, 295, 666
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 2 cut(s) 60, 323
BsaJI CCNNGG 2 cut(s) 422, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 218
Bse1I ACTGG 2 cut(s) 306, 447
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 422, 431
BseLI CCNNNNNNNGG 2 cut(s) 217, 218
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 306, 447
BseXI GCAGC 8 cut(s) 130, 136, 158, 164, 251, 277, 280, 651
BshFI GGCC 2 cut(s) 140, 430
BsiHKAI GWGCWC 1 cut(s) 676
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 217, 218
BsmFI GGGAC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 2 cut(s) 140, 430
Bsp1286I GDGCHC 1 cut(s) 676
Bsp1407I TGTACA 1 cut(s) 451
Bsp19I CCATGG 1 cut(s) 422
BspACI CCGC 3 cut(s) 64, 141, 533
BspANI GGCC 2 cut(s) 140, 430
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 3 cut(s) 148, 154, 651
BspQI GCTCTTC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 2 cut(s) 306, 447
BssECI CCNNGG 2 cut(s) 422, 431
BssT1I CCWWGG 2 cut(s) 422, 431
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 422
BstMWI GCNNNNNNNGC 4 cut(s) 146, 149, 152, 482
BstSFI CTRYAG 3 cut(s) 144, 150, 647
BstV1I GCAGC 8 cut(s) 130, 136, 158, 164, 251, 277, 280, 651
BstV2I GAAGAC 1 cut(s) 590
BsuRI GGCC 2 cut(s) 140, 430
BtgI CCRYGG 1 cut(s) 422
BtsIMutI CAGTG 2 cut(s) 181, 454
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 419, 452
CviAII CATG 3 cut(s) 20, 229, 423
CviQI GTAC 2 cut(s) 419, 452
DdeI CTNAG 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 422, 431
EcoO109I RGGNCCY 1 cut(s) 428
EcoT14I CCWWGG 2 cut(s) 422, 431
ErhI CCWWGG 2 cut(s) 422, 431
FaeI CATG 3 cut(s) 23, 232, 426
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 1 cut(s) 657
FatI CATG 3 cut(s) 19, 228, 422
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 9 cut(s) 141, 144, 147, 150, 153, 240, 291, 294, 665
Fsp4HI GCNGC 9 cut(s) 141, 144, 147, 150, 153, 240, 291, 294, 665
FspBI CTAG 3 cut(s) 297, 432, 683
GluI GCNGC 9 cut(s) 141, 144, 147, 150, 153, 240, 291, 294, 665
GsuI CTGGAG 2 cut(s) 60, 323
HaeIII GGCC 2 cut(s) 140, 430
Hin1II CATG 3 cut(s) 23, 232, 426
HinfI GANTC 1 cut(s) 184
HphI GGTGA 4 cut(s) 84, 290, 430, 638
Hpy166II GTNNAC 3 cut(s) 208, 438, 452
Hpy188I TCNGA 2 cut(s) 107, 172
Hpy8I GTNNAC 3 cut(s) 208, 438, 452
HpyAV CCTTC 2 cut(s) 120, 634
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 6 cut(s) 43, 146, 152, 514, 554, 649
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 149, 152, 482
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 3 cut(s) 23, 232, 426
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 79, 540
LpnPI CCDG 9 cut(s) 90, 95, 141, 287, 331, 458, 460, 612, 698
Lsp1109I GCAGC 8 cut(s) 130, 136, 158, 164, 251, 277, 280, 651
MaeI CTAG 3 cut(s) 297, 432, 683
MaeIII GTNAC 1 cut(s) 601
MbiI CCGCTC 1 cut(s) 535
MboII GAAGA 5 cut(s) 17, 296, 361, 595, 632
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 7 cut(s) 12, 38, 58, 100, 111, 166, 539
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 5 cut(s) 105, 187, 211, 256, 622
MseI TTAA 1 cut(s) 375
MspA1I CMGCKG 3 cut(s) 143, 149, 155
Mva1269I GAATGC 1 cut(s) 554
MwoI GCNNNNNNNGC 4 cut(s) 146, 149, 152, 482
NcoI CCATGG 1 cut(s) 422
NdeI CATATG 1 cut(s) 313
NlaIII CATG 3 cut(s) 23, 232, 426
NlaIV GGNNCC 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 184
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 9 cut(s) 142, 145, 148, 151, 154, 241, 292, 295, 666
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 428
PstI CTGCAG 3 cut(s) 148, 154, 651
PsyI GACNNNGTC 1 cut(s) 230
PvuII CAGCTG 2 cut(s) 149, 155
RsaI GTAC 2 cut(s) 420, 453
RsaNI GTAC 2 cut(s) 419, 452
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 9 cut(s) 141, 144, 147, 150, 153, 240, 291, 294, 665
Sau96I GGNCC 1 cut(s) 428
SduI GDGCHC 1 cut(s) 676
SfcI CTRYAG 3 cut(s) 144, 150, 647
SpeI ACTAGT 1 cut(s) 682
Sse9I AATT 7 cut(s) 12, 38, 58, 100, 111, 166, 539
SsiI CCGC 3 cut(s) 64, 141, 533
SspMI CTAG 3 cut(s) 297, 432, 683
StyI CCWWGG 2 cut(s) 422, 431
TaaI ACNGT 1 cut(s) 176
TasI AATT 7 cut(s) 12, 38, 58, 100, 111, 166, 539
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 2 cut(s) 181, 454
TseI GCWGC 8 cut(s) 143, 146, 149, 152, 239, 290, 293, 664
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 181, 454
Tth111I GACNNNGTC 1 cut(s) 230
XapI RAATTY 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 431
XspI CTAG 3 cut(s) 297, 432, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.