MD09G1286500.v1.1

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012266
Physical Location & Seq
Forward (+)
36516165 .. 36520299
4135 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1286500.v1.1.491

Sequence Viewer

Length: 849 bp
ATGGCTCTGGCGATTTCCCATGCTTTTCTCTGCCCCAAATTGCAATTTTCCCAAAGGAATTTCCGCCCTAAAGTCCCGGAGTTGAGGCTGCCACCCTCTTTCGTCAGAACAATTCCACAGAATACAAGGGTAATTTGTGCGGCTGCGTCTGCGGCTGGAAGTTCTAATCCGGACGGTGATTTGAATCCATATGAGGTTCTCGGTGTGAGCCCAATTGAGGGATTTGACATGATCAAGGCAGCGTATACGAAAAAACACAAGGAGGCCGTGAGGAGCGGTGATGAAGCAACTGCTGCTAGACTGGAGAAAGCATATGACAAAGTCATGATGGCACAGCTAACTAATAGGAAGAAAGGTGTAACCTTTGGTTCCTTCAAGGTTTCAAAGGACATCAAATATGCAGATAAGCAACCAATTGTACCATGGGGGCCTAGGTTCACCAAGTCTACTGTACAAGATATGCGCATCAACCTGGCAATATCTGCTGTATTTGTAGCTTGGCTTCTTATCAAGCGGAATGCTGAATATAAACCCTTGCAATTTTTAACTTTTGCTTTTGTTTATCGGATTTTTGAGAAGTTGAAATCCTTTGAACCGCCTGTATCTCCAACATATACAGAAGATGGTGAGGATGCAGGGAGGGGACTGCGAATGGGAAAACGATTGCTCCGTTCACTTGCACTAGTGTTTGGCTGTATTGCGATTGCTTCTGTGGGATACACTACTGTACTGAATTTGATCGAGTATTTGGGTAGCTACATTCCTGCTGCTCTTTACAATAACCAGGAATTGATAATCACTTCATCAACCGCGTTCATGCTCTACATTATGGCATCGTATTATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

283

Amino Acids

31.54

Weight (kDa)

9.65

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 75 - 191 1.2e-09 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08640
fragaria_vesca FvH4_6g01960 FvH4_6g01960
malus_domestica MD09G1286500.v1.1 MD17G1278900.v1.1
prunus_persica Prupe.6G349300_v2.0.a1
pyrus_communis pycom09g19360 pycom17g27650
rosa_chinensis RchiOBHm_Chr3g0449811
rosa_laevigata RLG00000025796 RLG00000025798
rosa_multiflora Rmu_sc0013983.1_g000007
rosa_roxburghii Rroxscaffold_6G00427630
rosa_rugosa Rorug02G0623500
rosa_samantha Rh3AG021700 Rh3BG022400 Rh3CG021000 Rh3DG022100
rosa_wichuraiana Rw3G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 464
AccBSI CCGCTC 1 cut(s) 276
AccI GTMKAC 2 cut(s) 245, 446
AccII CGCG 1 cut(s) 812
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 7 cut(s) 64, 140, 152, 276, 514, 596, 810
AcsI RAATTY 2 cut(s) 58, 733
AfaI GTAC 3 cut(s) 420, 453, 729
AfiI CCNNNNNNNGG 2 cut(s) 217, 218
AgsI TTSAA 5 cut(s) 184, 376, 384, 583, 593
AhlI ACTAGT 1 cut(s) 682
AjnI CCWGG 2 cut(s) 471, 783
AluBI AGCT 3 cut(s) 337, 497, 756
AluI AGCT 3 cut(s) 337, 497, 756
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 264, 428
ApeKI GCWGC 5 cut(s) 88, 143, 239, 293, 767
ApoI RAATTY 2 cut(s) 58, 733
AspA2I CCTAGG 1 cut(s) 431
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 4 cut(s) 188, 290, 430, 638
AvrII CCTAGG 1 cut(s) 431
BanII GRGCYC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BbvI GCAGC 5 cut(s) 75, 130, 251, 280, 754
BccI CCATC 2 cut(s) 322, 617
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 2 cut(s) 473, 785
BciVI GTATCC 1 cut(s) 710
BclI TGATCA 1 cut(s) 231
BcnI CCSGG 1 cut(s) 77
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 3 cut(s) 297, 432, 683
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 7 cut(s) 89, 141, 144, 153, 240, 294, 768
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 7 cut(s) 90, 142, 145, 154, 241, 295, 769
Bme1390I CCNGG 3 cut(s) 77, 473, 785
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 370, 429
BmrFI CCNGG 3 cut(s) 77, 473, 785
BmsI GCATC 3 cut(s) 474, 622, 842
BpmI CTGGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 422, 431
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 218
Bse1I ACTGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 183
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 2 cut(s) 473, 785
BseDI CCNNGG 2 cut(s) 422, 431
BseGI GGATG 1 cut(s) 637
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 217, 218
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 5 cut(s) 75, 130, 251, 280, 754
Bsh1236I CGCG 1 cut(s) 812
BshFI GGCC 2 cut(s) 266, 430
BsiSI CCGG 2 cut(s) 77, 170
BslFI GGGAC 2 cut(s) 59, 657
BslI CCNNNNNNNGG 2 cut(s) 217, 218
BsmFI GGGAC 2 cut(s) 59, 657
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 2 cut(s) 266, 430
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 2 cut(s) 231, 738
Bsp19I CCATGG 1 cut(s) 422
BspACI CCGC 7 cut(s) 64, 140, 152, 276, 514, 596, 810
BspANI GGCC 2 cut(s) 266, 430
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 1 cut(s) 812
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 370, 429
BsrBI CCGCTC 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 422, 431
BssMI GATC 2 cut(s) 231, 738
BssNAI GTATAC 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 422, 431
Bst1107I GTATAC 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 473, 785
Bst4CI ACNGT 3 cut(s) 176, 451, 727
BstAPI GCANNNNNTGC 2 cut(s) 293, 482
BstAUI TGTACA 1 cut(s) 451
BstDSI CCRYGG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 637
BstFNI CGCG 1 cut(s) 812
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 234, 741
BstMBI GATC 2 cut(s) 231, 738
BstMWI GCNNNNNNNGC 4 cut(s) 149, 152, 293, 482
BstNI CCWGG 2 cut(s) 473, 785
BstSCI CCNGG 3 cut(s) 75, 471, 783
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 5 cut(s) 75, 130, 251, 280, 754
BstZ17I GTATAC 1 cut(s) 246
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 2 cut(s) 266, 430
BtgI CCRYGG 1 cut(s) 422
BtsCI GGATG 1 cut(s) 637
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 135
Csp6I GTAC 3 cut(s) 419, 452, 728
CviAII CATG 5 cut(s) 20, 229, 325, 423, 817
CviQI GTAC 3 cut(s) 419, 452, 728
DpnI GATC 2 cut(s) 233, 740
DpnII GATC 2 cut(s) 231, 738
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 422, 431
Eco24I GRGCYC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 471, 783
EcoT14I CCWWGG 2 cut(s) 422, 431
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 2 cut(s) 422, 431
FaeI CATG 5 cut(s) 23, 232, 328, 426, 820
FaqI GGGAC 2 cut(s) 59, 657
FatI CATG 5 cut(s) 19, 228, 324, 422, 816
FauNDI CATATG 2 cut(s) 190, 313
FbaI TGATCA 1 cut(s) 231
FblI GTMKAC 2 cut(s) 245, 446
Fnu4HI GCNGC 7 cut(s) 89, 141, 144, 153, 240, 294, 768
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 7 cut(s) 89, 141, 144, 153, 240, 294, 768
FspAI RTGCGCAY 1 cut(s) 464
FspBI CTAG 3 cut(s) 297, 432, 683
FspI TGCGCA 1 cut(s) 464
GlaI GCGC 1 cut(s) 464
GluI GCNGC 7 cut(s) 89, 141, 144, 153, 240, 294, 768
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 2 cut(s) 266, 430
HapII CCGG 2 cut(s) 77, 170
HgaI GACGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 465
Hin1II CATG 5 cut(s) 23, 232, 328, 426, 820
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HinfI GANTC 1 cut(s) 184
HpaII CCGG 2 cut(s) 77, 170
HphI GGTGA 4 cut(s) 188, 290, 430, 638
Hpy166II GTNNAC 4 cut(s) 246, 438, 447, 674
Hpy188I TCNGA 2 cut(s) 107, 567
Hpy188III TCNNGA 2 cut(s) 170, 325
Hpy8I GTNNAC 4 cut(s) 246, 438, 447, 674
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 3 cut(s) 176, 451, 727
HpyCH4V TGCA 5 cut(s) 43, 401, 538, 635, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 152, 293, 482
Hsp92II CATG 5 cut(s) 23, 232, 328, 426, 820
HspAI GCGC 1 cut(s) 463
Kpn2I TCCGGA 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 231, 738
LmnI GCTCC 2 cut(s) 273, 672
Lsp1109I GCAGC 5 cut(s) 75, 130, 251, 280, 754
LweI GCATC 3 cut(s) 474, 622, 842
MaeI CTAG 3 cut(s) 297, 432, 683
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 233, 740
MbiI CCGCTC 1 cut(s) 276
MboI GATC 2 cut(s) 231, 738
MboII GAAGA 2 cut(s) 361, 632
MfeI CAATTG 2 cut(s) 213, 414
MhlI GDGCHC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 8 cut(s) 78, 106, 187, 211, 256, 264, 622, 633
MroI TCCGGA 1 cut(s) 169
MseI TTAA 1 cut(s) 545
MspI CCGG 2 cut(s) 77, 170
MspR9I CCNGG 3 cut(s) 77, 473, 785
MunI CAATTG 2 cut(s) 213, 414
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 473, 785
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 4 cut(s) 149, 152, 293, 482
NciI CCSGG 1 cut(s) 77
NcoI CCATGG 1 cut(s) 422
NdeI CATATG 2 cut(s) 190, 313
NdeII GATC 2 cut(s) 231, 738
NlaIII CATG 5 cut(s) 23, 232, 328, 426, 820
NlaIV GGNNCC 2 cut(s) 370, 429
NsbI TGCGCA 1 cut(s) 464
PagI TCATGA 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PctI GAATGC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 184
PflFI GACNNNGTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 7 cut(s) 90, 142, 145, 154, 241, 295, 769
Psp6I CCWGG 2 cut(s) 471, 783
PspGI CCWGG 2 cut(s) 471, 783
PspN4I GGNNCC 2 cut(s) 370, 429
PspPI GGNCC 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 3 cut(s) 420, 453, 729
RsaNI GTAC 3 cut(s) 419, 452, 728
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 7 cut(s) 89, 141, 144, 153, 240, 294, 768
Sau3AI GATC 2 cut(s) 231, 738
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 3 cut(s) 77, 473, 785
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 3 cut(s) 474, 622, 842
SpeI ACTAGT 1 cut(s) 682
SsiI CCGC 7 cut(s) 64, 140, 152, 276, 514, 596, 810
SspMI CTAG 3 cut(s) 297, 432, 683
StyD4I CCNGG 3 cut(s) 75, 471, 783
StyI CCWWGG 2 cut(s) 422, 431
TaaI ACNGT 3 cut(s) 176, 451, 727
TaqI TCGA 1 cut(s) 741
TatI WGTACW 2 cut(s) 451, 727
TauI GCSGC 2 cut(s) 143, 155
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseI GCWGC 5 cut(s) 88, 143, 239, 293, 767
TspDTI ATGAA 3 cut(s) 297, 792, 805
TspGWI ACGGA 1 cut(s) 659
Tth111I GACNNNGTC 1 cut(s) 320
XapI RAATTY 2 cut(s) 58, 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmaJI CCTAGG 1 cut(s) 431
XmiI GTMKAC 2 cut(s) 245, 446
XspI CTAG 3 cut(s) 297, 432, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.