AT1G08810
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009968
Physical Location & Seq
Reverse (-)
2819065 .. 2820478
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08810.1

Sequence Viewer

Length: 843 bp
ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGATCAAGAAAGGACCATGGACTCCTGAAGAAGATATCATTCTTGTTTCTTACATTCAAGAACATGGTCCTGGAAACTGGAGATCAGTTCCCACCAACACTGGGTTATTGAGATGCAGCAAAAGTTGTAGACTGAGATGGACAAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGAAGGAATGATCATTCACTTGCAAGCCTTATTGGGTAACAAATGGGCGTCCATAGCTTCATACCTACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTAAAGAAGAAGCTCAACAAGTCTGACAGTGATGAGAGGAGCAGATCAGAGAACATTGCGCTGCAAACTTCTTCGACAAGAAACACCATTAATCATAGATCTACCTATGCTTCAAGCACCGAAAACATTTCCCGCCTTCTTGAGGGTTGGATGAGAGCGTCTCCAAAGAGTAGTACAAGTACTACTTTCTTGGAACACAAAATGCAGAACCGGACAAACAATTTCATCGATCATCACAGCGATCAGTTTCCATACGAGCAGCTTCAAGGTTCTTGGGAAGAGGGTCATAGCAAAGGAATCAACGGGGATGATGACCAGGGTATAAAGAATTCAGAGAATAACAACGGTGATGATGTTCATCATGAAGATGGTGATCATGAGGATGATGATGATCATAATGCTACACCACCATTGACATTTATTGAGAAATGGCTTTTGGAGGAAACAAGTACTACTGGGGGTCAAATGGAAGAGATGAGCCACTTGATGGAGCTCTCTAATATGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

280

Amino Acids

32.02

Weight (kDa)

5.77

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 5.7e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 5.9e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 6.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 820
AccI GTMKAC 1 cut(s) 160
AciI CCGC 1 cut(s) 466
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 3 cut(s) 508, 514, 784
AfiI CCNNNNNNNGG 3 cut(s) 132, 475, 820
AgsI TTSAA 3 cut(s) 89, 447, 599
AjnI CCWGG 3 cut(s) 100, 187, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 4 cut(s) 278, 346, 595, 826
AluI AGCT 4 cut(s) 278, 346, 595, 826
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 2 cut(s) 178, 498
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 3 cut(s) 147, 394, 592
ApoI RAATTY 1 cut(s) 661
AseI ATTAAT 1 cut(s) 423
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 44, 98
AsuHPI GGTGA 2 cut(s) 692, 716
AvaII GGWCC 2 cut(s) 44, 98
BanII GRGCYC 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 3 cut(s) 159, 381, 604
BccI CCATC 3 cut(s) 162, 695, 814
BciT130I CCWGG 3 cut(s) 102, 189, 650
BclI TGATCA 3 cut(s) 231, 706, 724
BcoDI GTCTC 2 cut(s) 178, 498
BglII AGATCT 1 cut(s) 431
BisI GCNGC 3 cut(s) 148, 395, 593
BlsI GCNGC 3 cut(s) 149, 396, 594
BmcAI AGTACT 2 cut(s) 514, 784
Bme1390I CCNGG 3 cut(s) 102, 189, 650
Bme18I GGWCC 2 cut(s) 44, 98
BmgT120I GGNCC 2 cut(s) 44, 98
BmrFI CCNGG 3 cut(s) 102, 189, 650
BmrI ACTGGG 2 cut(s) 141, 798
BmsI GCATC 1 cut(s) 134
BmuI ACTGGG 2 cut(s) 141, 798
BplI GAGNNNNNCTC 2 cut(s) 478, 510
BpmI CTGGAG 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 561
BsaBI GATNNNNATC 4 cut(s) 32, 690, 705, 723
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 47, 649
BsaWI WCCGGW 1 cut(s) 543
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 475, 820
Bse1I ACTGG 4 cut(s) 113, 136, 326, 793
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 4 cut(s) 32, 690, 705, 723
BseBI CCWGG 3 cut(s) 102, 189, 650
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 2 cut(s) 47, 649
BseGI GGATG 3 cut(s) 489, 646, 721
BseJI GATNNNNATC 4 cut(s) 32, 690, 705, 723
BseLI CCNNNNNNNGG 3 cut(s) 132, 475, 820
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 155, 173
BseNI ACTGG 4 cut(s) 113, 136, 326, 793
BseRI GAGGAG 2 cut(s) 204, 385
BseXI GCAGC 3 cut(s) 159, 381, 604
BshFI GGCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 828
BsiSI CCGG 1 cut(s) 544
BslI CCNNNNNNNGG 3 cut(s) 132, 475, 820
BsmAI GTCTC 2 cut(s) 178, 498
BsmBI CGTCTC 1 cut(s) 498
BsnI GGCC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 828
Bsp143I GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 156, 174
BspDI ATCGAT 1 cut(s) 561
BspHI TCATGA 3 cut(s) 217, 694, 709
BspPI GGATC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 4 cut(s) 113, 136, 326, 793
BssECI CCNNGG 2 cut(s) 47, 649
BssMI GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
BssNI GRCGYC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 3 cut(s) 102, 189, 650
Bst4CI ACNGT 2 cut(s) 362, 680
Bst6I CTCTTC 2 cut(s) 606, 798
BstACI GRCGYC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 164, 182
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 473
BstF5I GGATG 3 cut(s) 489, 646, 721
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 9 cut(s) 36, 116, 234, 380, 434, 565, 577, 709, 727
BstMAI GTCTC 2 cut(s) 178, 498
BstMBI GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 3 cut(s) 102, 189, 650
BstSCI CCNGG 3 cut(s) 100, 187, 648
BstV1I GCAGC 3 cut(s) 159, 381, 604
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
Bsu15I ATCGAT 1 cut(s) 561
BsuRI GGCC 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 489, 646, 721
BtsIMutI CAGTG 2 cut(s) 129, 367
Cac8I GCNNGC 1 cut(s) 246
CciI TCATGA 3 cut(s) 217, 694, 709
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 44, 98
ClaI ATCGAT 1 cut(s) 561
CseI GACGC 2 cut(s) 258, 480
Csp6I GTAC 3 cut(s) 507, 513, 783
CviAII CATG 6 cut(s) 15, 48, 95, 218, 695, 710
CviJI RGCY 8 cut(s) 10, 248, 278, 346, 595, 766, 813, 826
CviKI_1 RGCY 8 cut(s) 10, 248, 278, 346, 595, 766, 813, 826
CviQI GTAC 3 cut(s) 507, 513, 783
DdeI CTNAG 2 cut(s) 164, 182
DpnI GATC 9 cut(s) 35, 115, 233, 379, 433, 564, 576, 708, 726
DpnII GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
DraI TTTAAA 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 606, 798
EarI CTCTTC 2 cut(s) 606, 798
Ecl136II GAGCTC 1 cut(s) 826
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 1 cut(s) 178
Eco32I GATATC 2 cut(s) 67, 310
Eco47I GGWCC 2 cut(s) 44, 98
Eco53kI GAGCTC 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 826
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 661
EcoRII CCWGG 3 cut(s) 100, 187, 648
EcoRV GATATC 2 cut(s) 67, 310
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 828
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 498
FaeI CATG 6 cut(s) 18, 51, 98, 221, 698, 713
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FatI CATG 6 cut(s) 14, 47, 94, 217, 694, 709
FauI CCCGC 1 cut(s) 473
FbaI TGATCA 3 cut(s) 231, 706, 724
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 148, 395, 593
FokI GGATG 3 cut(s) 496, 653, 728
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 3 cut(s) 148, 395, 593
GlaI GCGC 1 cut(s) 393
GluI GCNGC 3 cut(s) 148, 395, 593
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 544
HgaI GACGC 2 cut(s) 258, 480
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 6 cut(s) 18, 51, 98, 221, 698, 713
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HinfI GANTC 2 cut(s) 52, 630
HpaII CCGG 1 cut(s) 544
HphI GGTGA 2 cut(s) 692, 716
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 4 cut(s) 183, 358, 382, 667
Hpy188III TCNNGA 8 cut(s) 37, 56, 89, 218, 313, 473, 695, 710
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 218, 479
HpyCH4III ACNGT 2 cut(s) 362, 680
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 147, 244, 397, 538
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 164, 182
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 6 cut(s) 18, 51, 98, 221, 698, 713
HspAI GCGC 1 cut(s) 392
Ksp22I TGATCA 3 cut(s) 231, 706, 724
Kzo9I GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
LmnI GCTCC 2 cut(s) 372, 823
Lsp1109I GCAGC 3 cut(s) 159, 381, 604
LweI GCATC 1 cut(s) 134
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 20, 257
MalI GATC 9 cut(s) 35, 115, 233, 379, 433, 564, 576, 708, 726
MboI GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
MboII GAAGA 8 cut(s) 71, 74, 233, 352, 396, 623, 710, 815
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 828
MluCI AATT 4 cut(s) 175, 192, 553, 661
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 7 cut(s) 21, 225, 363, 469, 607, 706, 766
MseI TTAA 4 cut(s) 195, 335, 423, 841
MslI CAYNNNNRTG 2 cut(s) 699, 714
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 3 cut(s) 102, 189, 650
MvaI CCWGG 3 cut(s) 102, 189, 650
MwoI GCNNNNNNNGC 1 cut(s) 275
NcoI CCATGG 1 cut(s) 47
NdeII GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
NlaIII CATG 6 cut(s) 18, 51, 98, 221, 698, 713
NmuCI GTSAC 1 cut(s) 20
PagI TCATGA 3 cut(s) 217, 694, 709
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 630
PflMI CCANNNNNTGG 1 cut(s) 820
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 3 cut(s) 149, 396, 594
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 828
Psp6I CCWGG 3 cut(s) 100, 187, 648
PspGI CCWGG 3 cut(s) 100, 187, 648
PspPI GGNCC 2 cut(s) 44, 98
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 3 cut(s) 508, 514, 784
RsaNI GTAC 3 cut(s) 507, 513, 783
RseI CAYNNNNRTG 2 cut(s) 699, 714
SacI GAGCTC 1 cut(s) 828
SaqAI TTAA 4 cut(s) 195, 335, 423, 841
SatI GCNGC 3 cut(s) 148, 395, 593
Sau3AI GATC 9 cut(s) 33, 113, 231, 377, 431, 562, 574, 706, 724
Sau96I GGNCC 2 cut(s) 44, 98
ScaI AGTACT 2 cut(s) 514, 784
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 102, 189, 650
SduI GDGCHC 1 cut(s) 828
SetI ASST 9 cut(s) 190, 202, 280, 288, 348, 440, 597, 604, 828
SfaNI GCATC 1 cut(s) 134
SinI GGWCC 2 cut(s) 44, 98
SmiMI CAYNNNNRTG 2 cut(s) 699, 714
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 4 cut(s) 175, 192, 553, 661
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 1 cut(s) 466
SstI GAGCTC 1 cut(s) 828
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 100, 187, 648
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 362, 680
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 407, 561
TasI AATT 4 cut(s) 175, 192, 553, 661
TatI WGTACW 3 cut(s) 506, 512, 782
TfiI GAWTC 1 cut(s) 630
Tru1I TTAA 4 cut(s) 195, 335, 423, 841
Tru9I TTAA 4 cut(s) 195, 335, 423, 841
TscAI CASTG 2 cut(s) 136, 367
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 3 cut(s) 147, 394, 592
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 234, 270, 547, 680, 711
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 136, 367
Van91I CCANNNNNTGG 1 cut(s) 820
VpaK11BI GGWCC 2 cut(s) 44, 98
VspI ATTAAT 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 473
XapI RAATTY 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 160
ZrmI AGTACT 2 cut(s) 514, 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.