Rorug03G0275900
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009968
Physical Location & Seq
Reverse (-)
27294911 .. 27295627
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0275900.1

Sequence Viewer

Length: 717 bp
ATGGCTCCATGGCAAGTCTTTGACCTTGTTTCTCACCATCTTGACCCCAAGACCCTAGCCATAGCCTGTTGCGTCTGCAAGTCCTGGTTGAGTTGCATTTCCTCCGACCACATTTGGAAGCCCATTTGCACCACCCATTTCCCTTCTCTCTCTAATCTCATGCTCACAAACCCCGCCATTCCCTACTACCGCCTCTACGCCATGGCCTCTGCCGCCGCCAAACGCCGCTTCCAGACCCCCTCCAAACCCTGCCTTGCCCTCGACAACCTCATCTTCACCGTCAACGTCTTCAACCACAAGAATGTTCTCTGTCTTGAAAAACCCGGGAACGAGCTAGTCGTGGATTCCAACGGGGTGTTCAAGTTCGATATTGCCGTCGATAACTACGAGTTTGAAGCTGTGGCGCTGGAGTCGGTGAGAGTTACGTGGAATGTGGTGTTGAAAGGGTGGAAAGGGGTTTTTAATATGTTGGAATGTCAAGGGAAGAAAGGGGTCGACTGGTGGTACTGGGAGGAGCTGCCTTTGCCGGGGTGTTGCTCGGGCCTCGTCGATAGCGGTGTCGTGGCGGATTTGAGGTTGGAGTTTACTGATAGCAAAAACAATGTTGATGTTGGGCGGATCAACAAAGTGAGCGTGGGGATGTTGAGTACGGTAAAGTTGAGATATGTCAGTGTGGATGCTGCTCTAAGATACTTGCAACACTTTCTTGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

238

Amino Acids

26.8

Weight (kDa)

7.53

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 44 3e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AciI CCGC 8 cut(s) 174, 190, 213, 216, 226, 555, 566, 616
AclWI GGATC 1 cut(s) 626
AfaI GTAC 2 cut(s) 506, 649
AfiI CCNNNNNNNGG 1 cut(s) 527
AgsI TTSAA 5 cut(s) 292, 317, 361, 395, 442
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 4 cut(s) 212, 244, 341, 373
AluBI AGCT 3 cut(s) 334, 398, 517
AluI AGCT 3 cut(s) 334, 398, 517
AlwI GGATC 1 cut(s) 626
Ama87I CYCGRG 2 cut(s) 323, 538
AoxI GGCC 2 cut(s) 204, 541
ApeKI GCWGC 2 cut(s) 517, 680
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 3 cut(s) 324, 325, 528
AsuHPI GGTGA 3 cut(s) 26, 268, 427
AvaI CYCGRG 2 cut(s) 323, 538
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 504, 667
BccI CCATC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 3 cut(s) 324, 325, 528
BfaI CTAG 2 cut(s) 56, 335
BfoI RGCGCY 1 cut(s) 407
BisI GCNGC 5 cut(s) 213, 216, 226, 518, 681
BlsI GCNGC 5 cut(s) 214, 217, 227, 519, 682
Bme1390I CCNGG 4 cut(s) 85, 324, 325, 528
BmeT110I CYCGRG 2 cut(s) 323, 538
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 85, 324, 325, 528
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 1 cut(s) 667
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 428
BpuMI CCSGG 3 cut(s) 324, 325, 528
BsaAI YACGTR 1 cut(s) 426
BsaJI CCNNGG 4 cut(s) 8, 201, 323, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 2 cut(s) 503, 512
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 4 cut(s) 8, 201, 323, 527
BseGI GGATG 2 cut(s) 645, 682
BseLI CCNNNNNNNGG 1 cut(s) 527
BseNI ACTGG 2 cut(s) 503, 512
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 504, 667
BshFI GGCC 2 cut(s) 206, 543
BsiHKCI CYCGRG 2 cut(s) 323, 538
BsiSI CCGG 2 cut(s) 324, 527
BslI CCNNNNNNNGG 1 cut(s) 527
BsnI GGCC 2 cut(s) 206, 543
BsoBI CYCGRG 2 cut(s) 323, 538
Bsp143I GATC 1 cut(s) 618
Bsp19I CCATGG 2 cut(s) 8, 201
BspACI CCGC 8 cut(s) 174, 190, 213, 216, 226, 555, 566, 616
BspANI GGCC 2 cut(s) 206, 543
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 626
BsrI ACTGG 2 cut(s) 503, 512
BssECI CCNNGG 4 cut(s) 8, 201, 323, 527
BssMI GATC 1 cut(s) 618
BssT1I CCWWGG 2 cut(s) 8, 201
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 280, 652
BstBAI YACGTR 1 cut(s) 426
BstDEI CTNAG 1 cut(s) 686
BstDSI CCRYGG 2 cut(s) 8, 201
BstF5I GGATG 2 cut(s) 645, 682
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 1 cut(s) 621
BstMBI GATC 1 cut(s) 618
BstMWI GCNNNNNNNGC 2 cut(s) 212, 523
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 4 cut(s) 83, 322, 323, 526
BstV1I GCAGC 2 cut(s) 504, 667
BstV2I GAAGAC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 206, 543
BtgI CCRYGG 2 cut(s) 8, 201
BtsCI GGATG 2 cut(s) 645, 682
BtsIMutI CAGTG 1 cut(s) 676
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 541
Cfr9I CCCGGG 1 cut(s) 323
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 505, 648
CviAII CATG 3 cut(s) 9, 160, 202
CviJI RGCY 9 cut(s) 5, 59, 65, 121, 206, 334, 398, 517, 543
CviKI_1 RGCY 9 cut(s) 5, 59, 65, 121, 206, 334, 398, 517, 543
CviQI GTAC 2 cut(s) 505, 648
DdeI CTNAG 1 cut(s) 686
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
EciI GGCGGA 2 cut(s) 581, 631
Eco130I CCWWGG 2 cut(s) 8, 201
Eco88I CYCGRG 2 cut(s) 323, 538
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 8, 201
ErhI CCWWGG 2 cut(s) 8, 201
FaeI CATG 3 cut(s) 12, 163, 205
FaiI YATR 6 cut(s) 10, 62, 161, 203, 467, 666
FatI CATG 3 cut(s) 8, 159, 201
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 5 cut(s) 213, 216, 226, 518, 681
FokI GGATG 2 cut(s) 652, 689
Fsp4HI GCNGC 5 cut(s) 213, 216, 226, 518, 681
FspBI CTAG 2 cut(s) 56, 335
GlaI GCGC 1 cut(s) 405
GluI GCNGC 5 cut(s) 213, 216, 226, 518, 681
GsuI CTGGAG 1 cut(s) 428
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 2 cut(s) 206, 543
HapII CCGG 2 cut(s) 324, 527
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 406
Hin1II CATG 3 cut(s) 12, 163, 205
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HincII GTYRAC 2 cut(s) 283, 496
HindII GTYRAC 2 cut(s) 283, 496
HinfI GANTC 2 cut(s) 344, 410
HpaII CCGG 2 cut(s) 324, 527
HphI GGTGA 3 cut(s) 26, 268, 427
Hpy166II GTNNAC 3 cut(s) 283, 496, 585
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 41, 232, 314
Hpy8I GTNNAC 3 cut(s) 283, 496, 585
Hpy99I CGWCG 2 cut(s) 380, 551
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 280, 652
HpyCH4IV ACGT 2 cut(s) 285, 425
HpyCH4V TGCA 4 cut(s) 78, 96, 129, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 523
HpyF3I CTNAG 1 cut(s) 686
HpySE526I ACGT 2 cut(s) 285, 425
Hsp92II CATG 3 cut(s) 12, 163, 205
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 10, 514
Lsp1109I GCAGC 2 cut(s) 504, 667
LweI GCATC 1 cut(s) 667
MaeI CTAG 2 cut(s) 56, 335
MaeII ACGT 2 cut(s) 285, 425
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 620
MboI GATC 1 cut(s) 618
MboII GAAGA 3 cut(s) 265, 280, 496
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 4 cut(s) 129, 372, 450, 558
MnlI CCTC 9 cut(s) 112, 203, 217, 250, 269, 278, 505, 554, 567
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 2 cut(s) 324, 527
MspR9I CCNGG 4 cut(s) 85, 324, 325, 528
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 212, 523
NciI CCSGG 3 cut(s) 324, 325, 528
NcoI CCATGG 2 cut(s) 8, 201
NdeII GATC 1 cut(s) 618
NlaIII CATG 3 cut(s) 12, 163, 205
NlaIV GGNNCC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 3 cut(s) 336, 372, 384
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 5 cut(s) 214, 217, 227, 519, 682
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 541
RsaI GTAC 2 cut(s) 506, 649
RsaNI GTAC 2 cut(s) 505, 648
RseI CAYNNNNRTG 1 cut(s) 300
SalI GTCGAC 1 cut(s) 494
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 5 cut(s) 213, 216, 226, 518, 681
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 4 cut(s) 85, 324, 325, 528
SetI ASST 8 cut(s) 27, 270, 288, 336, 400, 428, 519, 578
SfaNI GCATC 1 cut(s) 667
SmaI CCCGGG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 300
SsiI CCGC 8 cut(s) 174, 190, 213, 216, 226, 555, 566, 616
SspMI CTAG 2 cut(s) 56, 335
StyD4I CCNGG 4 cut(s) 83, 322, 323, 526
StyI CCWWGG 2 cut(s) 8, 201
TaaI ACNGT 2 cut(s) 280, 652
TaiI ACGT 2 cut(s) 288, 428
TaqI TCGA 5 cut(s) 261, 366, 378, 495, 549
TauI GCSGC 3 cut(s) 215, 218, 228
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 676
TseI GCWGC 2 cut(s) 517, 680
TspMI CCCGGG 1 cut(s) 323
TspRI CASTG 1 cut(s) 676
XmaI CCCGGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 2 cut(s) 56, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.