Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009968

Physical Location & Seq

Genomic Coordinates Reverse (-)

974917 .. 975857

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGAAGGGATCGATCATTCACTTGCAAGCTTTATTGGGTAACAAATGGGCAGCAATAGCTTCCTACCTGCCACAGAGAACCGATAACGACATAAAGAACTACTGGAACACCCACTTGAAGAAGAAGCTGAAGCAATTTCCATCAGCTCTTGATCCTCATACGACGTCAGATGATCCATTTAATGTAAATGTATCAAGGAGGAGCTTGAGTGAAGGGAGCTTAGATAATATGACAAGCCATGCCTCCTCAATTATTCTGAGGAACAACCAATCCTCCTCCTCCACATATGCCTCAAGCACCGAGAACATTTCACGGCTCCTAGAAGGTTGGATGAGATCCTCCCCAACTCCGAAGACCGCTAGCCTCAAATATAACGCTGCATCTGATGATGATCAAGAAAAACCTAGCGGTATTAGCACAGGAAACCTAGTATCTAACGAGGAGTTTGAATCGATTTTGTCCTATGAGAATTTGAACAATGTTGCTTCTTGGGACAGGTCTACTTGTGATTCATCTACTTATTCTAACAAGGTGTCACGACTCAGTATTGAAGTTCCAAATGGGGCGGAAATAATTCATGATCATCATCTTCTGCGCGACGAGGATCAGAAGAATAAGCAAATTATTCGATGCGAAAGCAGTAGTACTAATTGTAACAATCCTCCGTTGACATATCTTGAGAAGTGGCTGTTAGATGAAAGTGCTGGACATGTGGAAGCCGATCAGATGGTGGAATTGTCTCCAATGTCCTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

254

Amino Acids

28.25

Weight (kDa)

5.62

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	6 - 40	1.4e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	7 - 46	8.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08810 AT1G08810 AT1G08810
fragaria_vesca	FvH4_1g29710
malus_domestica	MD12G1013900.v1.1 MD14G1011400.v1.1
prunus_persica	Prupe.7G018400_v2.0.a1
pyrus_communis	pycom12g01150 pycom14g01010
rosa_chinensis	RchiOBHm_Chr3g0495721
rosa_laevigata	RLG00000022592
rosa_multiflora	Rmu_sc0005750.1_g000003 Rmu_sc0038059.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390080
rosa_rugosa	Rorug03G0275800 Rorug03G0275900
rosa_samantha	Rh3AG323400 Rh3BG358900 Rh3CG355500 Rh3DG358700
rosa_wichuraiana	Rw3G028260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	503
AccII	CGCG	1 cut(s)	600
AciI	CCGC	3 cut(s)	360, 411, 569
AclWI	GGATC	5 cut(s)	19, 149, 170, 333, 615
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	649
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	4 cut(s)	121, 452, 478, 554
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	32, 62, 130, 149, 207, 222
AluI	AGCT	6 cut(s)	32, 62, 130, 149, 207, 222
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	5 cut(s)	19, 149, 170, 333, 615
ApeKI	GCWGC	2 cut(s)	53, 380
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	600
AsuNHI	GCTAGC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	65, 367
BccI	CCATC	2 cut(s)	151, 724
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BclI	TGATCA	2 cut(s)	394, 583
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	4 cut(s)	323, 363, 408, 431
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	54, 381
BlsI	GCNGC	2 cut(s)	55, 382
BmcAI	AGTACT	1 cut(s)	649
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	2 cut(s)	392, 623
BmtI	GCTAGC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	362
BpuEI	CTTGAG	3 cut(s)	229, 280, 701
Bsa29I	ATCGAT	2 cut(s)	14, 455
BsaBI	GATNNNNATC	2 cut(s)	393, 588
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	753
BsaXI	ACNNNNNCTCC	4 cut(s)	196, 226, 260, 290
Bse1I	ACTGG	1 cut(s)	110
Bse8I	GATNNNNATC	2 cut(s)	393, 588
BseCI	ATCGAT	2 cut(s)	14, 455
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	2 cut(s)	393, 588
BseMII	CTCAG	2 cut(s)	251, 559
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	5 cut(s)	217, 238, 268, 271, 458
BseXI	GCAGC	2 cut(s)	65, 367
Bsh1236I	CGCG	1 cut(s)	600
BshVI	ATCGAT	2 cut(s)	14, 455
BslFI	GGGAC	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	509
Bsp143I	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
BspACI	CCGC	3 cut(s)	360, 411, 569
BspCNI	CTCAG	2 cut(s)	252, 558
BspDI	ATCGAT	2 cut(s)	14, 455
BspFNI	CGCG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	320
BspMI	ACCTGC	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	366
BspPI	GGATC	5 cut(s)	19, 149, 170, 333, 615
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	753
BstACI	GRCGYC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	30, 364
BstDEI	CTNAG	3 cut(s)	223, 260, 545
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	9 cut(s)	14, 18, 157, 178, 341, 397, 586, 610, 727
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 417
BstNSI	RCATGY	1 cut(s)	716
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	65, 367
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
Bsu15I	ATCGAT	2 cut(s)	14, 455
BsuTUI	ATCGAT	2 cut(s)	14, 455
BtsCI	GGATG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	30, 364
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	600
ClaI	ATCGAT	2 cut(s)	14, 455
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	3 cut(s)	242, 581, 713
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	3 cut(s)	223, 260, 545
DpnI	GATC	9 cut(s)	13, 17, 156, 177, 340, 396, 585, 609, 726
DpnII	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
EciI	GGCGGA	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	753
Eco57I	CTGAAG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	3 cut(s)	245, 584, 716
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	241, 580, 712
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	2 cut(s)	394, 583
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	2 cut(s)	54, 381
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	54, 381
FspBI	CTAG	4 cut(s)	323, 363, 408, 431
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	2 cut(s)	54, 381
HhaI	GCGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	245, 584, 716
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HindIII	AAGCTT	1 cut(s)	30
HinfI	GANTC	3 cut(s)	452, 512, 543
Hpy166II	GTNNAC	2 cut(s)	504, 672
Hpy188I	TCNGA	6 cut(s)	172, 261, 354, 388, 612, 729
Hpy188III	TCNNGA	5 cut(s)	152, 398, 540, 581, 680
Hpy8I	GTNNAC	2 cut(s)	504, 672
Hpy99I	CGWCG	2 cut(s)	169, 605
HpyAV	CCTTC	2 cut(s)	209, 320
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	28, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 417
HpyF3I	CTNAG	3 cut(s)	223, 260, 545
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	245, 584, 716
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	2 cut(s)	394, 583
Kzo9I	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
LmnI	GCTCC	3 cut(s)	204, 219, 324
LpnPI	CCDG	5 cut(s)	83, 91, 408, 484, 693
Lsp1109I	GCAGC	2 cut(s)	65, 367
LweI	GCATC	2 cut(s)	392, 623
MaeI	CTAG	4 cut(s)	323, 363, 408, 431
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	3 cut(s)	41, 537, 656
MalI	GATC	9 cut(s)	13, 17, 156, 177, 340, 396, 585, 609, 726
MboI	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
MboII	GAAGA	6 cut(s)	16, 133, 136, 367, 584, 625
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	7 cut(s)	137, 252, 472, 576, 624, 652, 737
MlyI	GAGTC	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	1 cut(s)	183
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	59, 417
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
NheI	GCTAGC	1 cut(s)	362
NlaIII	CATG	3 cut(s)	245, 584, 716
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	537
NspI	RCATGY	1 cut(s)	716
PagI	TCATGA	1 cut(s)	580
PciI	ACATGT	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	452, 512
PkrI	GCNGC	2 cut(s)	55, 382
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
PscI	ACATGT	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	54, 381
Sau3AI	GATC	9 cut(s)	11, 15, 154, 175, 338, 394, 583, 607, 724
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	392, 623
SmlI	CTYRAG	3 cut(s)	208, 295, 680
SmoI	CTYRAG	3 cut(s)	208, 295, 680
Sse9I	AATT	7 cut(s)	137, 252, 472, 576, 624, 652, 737
SsiI	CCGC	3 cut(s)	360, 411, 569
SspMI	CTAG	4 cut(s)	323, 363, 408, 431
StyI	CCWWGG	1 cut(s)	753
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	3 cut(s)	14, 455, 631
TasI	AATT	7 cut(s)	137, 252, 472, 576, 624, 652, 737
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	452, 512
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	2 cut(s)	53, 380
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	4 cut(s)	17, 504, 569, 714
TspGWI	ACGGA	1 cut(s)	657
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	716
XmiI	GTMKAC	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	4 cut(s)	323, 363, 408, 431
ZraI	GACGTC	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.