Rh3CG355500
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009968
Physical Location & Seq
Forward (+)
43483860 .. 43485490
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG355500.1

Sequence Viewer

Length: 795 bp
ATGATAATTCATTTGCAAGCTTTATTGGGTAACAAATGGGCAGCTATAGCTTCTTACCTCCCACAAAGAACAGACAATGATATAAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTCAAGAAGATTCAGTCAGCTGTTGATCATCATCATCAGCAGCAACCTCAGGCTCAAAATAATATATTGGGATCATCTATATCAGACTCGACCACAAGTAATTCTACTCATCATCAATATCCTCACAGGAATAATGTCAATGACATCACAAGCCATGCCTCGACAACAACTCTCAGTCTCAGGTCCATAAACCAGTCCTCCTCCTCCGGTGGTATATATGCCTCCAGTACCGAGAACATTTCGCGACTTCTTGAAGGATGGATGAGAACCTCCCCAAAGAGTACTAACGCTAACCTTGTAACCAAACCATCTCATGATCGTGAAGAAAACCCAAAAGGTGGCCAAGACCAAGATGAAGGCTGTGATCATGATCTTTTATCTCATGAAGCATTCGAATCGATTTTGTCCTTCGATAACTTGAATAATGTTAATGCTGCTTCCTGGGACAGGTCTAGTACTACTAATTGTGATTCTAGTTCTATCAAGCAGGTGTCTCAAACCCAATGTAGTACTGCAGCTGCCATTGCAAATGAGAAGGATAAGCACATTATTAGAGCCTGTGAAAGCACGAACACTCCTCCATTATCATTTCTTGAGAAATGGCTTCTGGATGAAAGTGCTGCTGGACAAGTACTAGAGGATCGAATGATGGAATTGTCTCCAATTTCCCTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

264

Amino Acids

29.23

Weight (kDa)

6.09

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 2 - 36 1.4e-10 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 3 - 43 3.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 1 cut(s) 361
AclWI GGATC 2 cut(s) 196, 765
AcoI YGGCCR 1 cut(s) 457
AfaI GTAC 5 cut(s) 346, 400, 574, 628, 750
AfiI CCNNNNNNNGG 2 cut(s) 455, 564
AgsI TTSAA 3 cut(s) 109, 371, 538
AjnI CCWGG 2 cut(s) 557, 786
AluBI AGCT 6 cut(s) 20, 44, 50, 118, 137, 635
AluI AGCT 6 cut(s) 20, 44, 50, 118, 137, 635
Alw26I GTCTC 3 cut(s) 299, 615, 780
AlwI GGATC 2 cut(s) 196, 765
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 6 cut(s) 41, 157, 551, 632, 635, 737
AspS9I GGNCC 1 cut(s) 300
AsuII TTCGAA 1 cut(s) 510
AvaII GGWCC 1 cut(s) 300
AxyI CCTNAGG 1 cut(s) 165
BalI TGGCCA 1 cut(s) 459
BbvI GCAGC 6 cut(s) 53, 169, 538, 622, 644, 724
BccI CCATC 3 cut(s) 369, 433, 760
BcgI CGANNNNNNTGC 2 cut(s) 495, 529
BciT130I CCWGG 2 cut(s) 559, 788
BclI TGATCA 2 cut(s) 142, 481
BcoDI GTCTC 3 cut(s) 299, 615, 780
BfaI CTAG 3 cut(s) 570, 591, 752
BfmI CTRYAG 2 cut(s) 45, 630
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 6 cut(s) 42, 158, 552, 633, 636, 738
BlsI GCNGC 6 cut(s) 43, 159, 553, 634, 637, 739
BmcAI AGTACT 4 cut(s) 400, 574, 628, 750
Bme1390I CCNGG 2 cut(s) 559, 788
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 300
BmrFI CCNGG 2 cut(s) 559, 788
BpmI CTGGAG 1 cut(s) 325
Bpu14I TTCGAA 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 104, 731
Bsa29I ATCGAT 1 cut(s) 515
BsaBI GATNNNNATC 2 cut(s) 147, 486
BsaJI CCNNGG 2 cut(s) 558, 786
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 676, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 564
Bse1I ACTGG 3 cut(s) 98, 310, 342
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 639
Bse8I GATNNNNATC 2 cut(s) 147, 486
BseBI CCWGG 2 cut(s) 559, 788
BseCI ATCGAT 1 cut(s) 515
BseDI CCNNGG 2 cut(s) 558, 786
BseGI GGATG 3 cut(s) 380, 384, 733
BseJI GATNNNNATC 2 cut(s) 147, 486
BseLI CCNNNNNNNGG 2 cut(s) 455, 564
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 3 cut(s) 179, 304, 310
BseNI ACTGG 3 cut(s) 98, 310, 342
BseRI GAGGAG 3 cut(s) 307, 310, 684
BseXI GCAGC 6 cut(s) 53, 169, 538, 622, 644, 724
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 515
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 2 cut(s) 455, 564
BsmAI GTCTC 3 cut(s) 299, 615, 780
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 510
Bsp143I GATC 6 cut(s) 142, 188, 433, 481, 487, 757
Bsp68I TCGCGA 1 cut(s) 361
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 3 cut(s) 178, 303, 309
BspDI ATCGAT 1 cut(s) 515
BspFNI CGCG 1 cut(s) 361
BspHI TCATGA 3 cut(s) 430, 484, 499
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 2 cut(s) 196, 765
BspT104I TTCGAA 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 3 cut(s) 98, 310, 342
BssECI CCNNGG 2 cut(s) 558, 786
BssMI GATC 6 cut(s) 142, 188, 433, 481, 487, 757
Bst2UI CCWGG 2 cut(s) 559, 788
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 165, 290, 296
BstENI CCTNNNNNAGG 1 cut(s) 562
BstF5I GGATG 3 cut(s) 380, 384, 733
BstFNI CGCG 1 cut(s) 361
BstKTI GATC 6 cut(s) 145, 191, 436, 484, 490, 760
BstMAI GTCTC 3 cut(s) 299, 615, 780
BstMBI GATC 6 cut(s) 142, 188, 433, 481, 487, 757
BstMWI GCNNNNNNNGC 2 cut(s) 47, 641
BstNI CCWGG 2 cut(s) 559, 788
BstSCI CCNGG 2 cut(s) 557, 786
BstSFI CTRYAG 2 cut(s) 45, 630
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 6 cut(s) 53, 169, 538, 622, 644, 724
Bsu15I ATCGAT 1 cut(s) 515
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 515
BtsCI GGATG 3 cut(s) 380, 384, 733
BtuMI TCGCGA 1 cut(s) 361
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 18
CciI TCATGA 3 cut(s) 430, 484, 499
Cfr13I GGNCC 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 515
Csp6I GTAC 5 cut(s) 345, 399, 573, 627, 749
CviAII CATG 4 cut(s) 272, 431, 485, 500
CviQI GTAC 5 cut(s) 345, 399, 573, 627, 749
DdeI CTNAG 3 cut(s) 165, 290, 296
DpnI GATC 6 cut(s) 144, 190, 435, 483, 489, 759
DpnII GATC 6 cut(s) 142, 188, 433, 481, 487, 757
EaeI YGGCCR 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 300
Eco81I CCTNAGG 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 557, 786
FaeI CATG 4 cut(s) 275, 434, 488, 503
FaqI GGGAC 1 cut(s) 575
FatI CATG 4 cut(s) 271, 430, 484, 499
FbaI TGATCA 2 cut(s) 142, 481
Fnu4HI GCNGC 6 cut(s) 42, 158, 552, 633, 636, 738
FokI GGATG 3 cut(s) 387, 391, 740
Fsp4HI GCNGC 6 cut(s) 42, 158, 552, 633, 636, 738
FspBI CTAG 3 cut(s) 570, 591, 752
GluI GCNGC 6 cut(s) 42, 158, 552, 633, 636, 738
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 459
HapII CCGG 1 cut(s) 324
Hin1II CATG 4 cut(s) 275, 434, 488, 503
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 4 cut(s) 127, 203, 512, 587
HpaII CCGG 1 cut(s) 324
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 9 cut(s) 121, 360, 368, 431, 437, 485, 500, 710, 725
HpyAV CCTTC 4 cut(s) 365, 467, 535, 646
HpyCH4V TGCA 3 cut(s) 16, 632, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 641
HpyF3I CTNAG 3 cut(s) 165, 290, 296
Hsp92II CATG 4 cut(s) 275, 434, 488, 503
Ksp22I TGATCA 2 cut(s) 142, 481
Kzo9I GATC 6 cut(s) 142, 188, 433, 481, 487, 757
Lsp1109I GCAGC 6 cut(s) 53, 169, 538, 622, 644, 724
MaeI CTAG 3 cut(s) 570, 591, 752
MaeIII GTNAC 2 cut(s) 29, 415
MalI GATC 6 cut(s) 144, 190, 435, 483, 489, 759
MboI GATC 6 cut(s) 142, 188, 433, 481, 487, 757
MboII GAAGA 4 cut(s) 121, 124, 136, 452
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 6 cut(s) 6, 88, 217, 580, 770, 780
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 1 cut(s) 197
Mox20I TGGCCA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 459
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 459
MspA1I CMGCKG 2 cut(s) 137, 635
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 559, 788
Mva1269I GAATGC 1 cut(s) 506
MvaI CCWGG 2 cut(s) 559, 788
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 47, 641
NdeII GATC 6 cut(s) 142, 188, 433, 481, 487, 757
NlaIII CATG 4 cut(s) 275, 434, 488, 503
NruI TCGCGA 1 cut(s) 361
NspV TTCGAA 1 cut(s) 510
PagI TCATGA 3 cut(s) 430, 484, 499
PaqCI CACCTGC 1 cut(s) 595
PctI GAATGC 1 cut(s) 506
PfeI GAWTC 3 cut(s) 127, 512, 587
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 6 cut(s) 43, 159, 553, 634, 637, 739
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 557, 786
PspGI CCWGG 2 cut(s) 557, 786
PspPI GGNCC 1 cut(s) 300
PstI CTGCAG 1 cut(s) 634
PvuII CAGCTG 2 cut(s) 137, 635
RruI TCGCGA 1 cut(s) 361
RsaI GTAC 5 cut(s) 346, 400, 574, 628, 750
RsaNI GTAC 5 cut(s) 345, 399, 573, 627, 749
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 6 cut(s) 42, 158, 552, 633, 636, 738
Sau3AI GATC 6 cut(s) 142, 188, 433, 481, 487, 757
Sau96I GGNCC 1 cut(s) 300
ScaI AGTACT 4 cut(s) 400, 574, 628, 750
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 559, 788
SfcI CTRYAG 2 cut(s) 45, 630
SfuI TTCGAA 1 cut(s) 510
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 119, 710
SmoI CTYRAG 2 cut(s) 119, 710
Sse9I AATT 6 cut(s) 6, 88, 217, 580, 770, 780
SspMI CTAG 3 cut(s) 570, 591, 752
StyD4I CCNGG 2 cut(s) 557, 786
TaqI TCGA 6 cut(s) 206, 278, 510, 515, 528, 760
TasI AATT 6 cut(s) 6, 88, 217, 580, 770, 780
TatI WGTACW 4 cut(s) 398, 572, 626, 748
TfiI GAWTC 3 cut(s) 127, 512, 587
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseI GCWGC 6 cut(s) 41, 157, 551, 632, 635, 737
TspDTI ATGAA 3 cut(s) 486, 516, 744
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 300
XagI CCTNNNNNAGG 1 cut(s) 562
XspI CTAG 3 cut(s) 570, 591, 752
ZrmI AGTACT 4 cut(s) 400, 574, 628, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.