FvH4_1g29710
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009968
Physical Location & Seq
Forward (+)
23021357 .. 23022826
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29710.t1

Sequence Viewer

Length: 1023 bp
ATGGGGAGGCCTCCTTGCTGTGAGAAGGTTGGCATAAAAAAAGGTCCATGGACACCTGAGGAGGATATCGTTCTGGTTTCTTACATACAAGAACATGGTCCAGGAAATTGGAGAGCAGTCCCAACCAACACTGGGTTATTGAGGTGCAGCAAAAGTTGCAGACTTAGATGGACTAACTATCTCAGACCTGGAATCAAGAGAGGGAACTTCACACCTCATGAAGAAGGGATGATAATTCATTTGCAAGCTTTATTGGGTAACAAATGGGCAGCTATAGCTTCGTACCTCCCACAAAGAACAGACAATGATATAAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTCAAGAAGATTCAGTCAGCTGTTGATCATCACCATCAGCAGTATCCTCAGGCTCACAATAATATATTGGGATCATCAATATCAGACTCCACCACCTGTAACTCTAATCCTCTTCAATATCCTACCAGGAATAATGTCAATGACATCACAAGCCATGCCTCGACAACAACACTCAGTCTCAGGTCCATAAACCAGTCCTCCTCCTCCGGTGGTATATATGCATCCAGCACCGAGAACATTTCGCGACTCCTTGAAGGATGGATGAGAACCTCCCCAAAGAGTACTAATGCTAACCTTGTCAGCAAACCATCTCTCGATCAAGAAGAGAGCCCAAAAGGTGGCCAAGACAAAGATGAAGGCTGTGATCATGATCTTCTATCTCATGAAGCATACGAATCGATGGTGTCCTTCGACAACTTGAATAATGTTAATGCTGCTTCCTGGGACAGGTCTAGTACTAATAATTGTAATTCGAGTTCTATCAAGCAGGTGTCTGAGACTCAAAGTAGTACCACACCTGTCATTCCAAATGAGAAGAATAAGCACATTATTAGAGCCTGTGACATCACTAGTACTCCTCCATTGTCATTTCTTGAGAAATGGCTTCTGGATGAAAGTGCTGCTGGGCAAGTACTAGAGGATCGAATGATGGAATTGTCTCCAATTACCTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

341

Amino Acids

37.84

Weight (kDa)

7.18

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3.1e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 9.2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 119 2.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 823
Acc36I ACCTGC 1 cut(s) 823
AccB7I CCANNNNNTGG 1 cut(s) 683
AccII CGCG 1 cut(s) 589
AclWI GGATC 2 cut(s) 424, 993
AcoI YGGCCR 1 cut(s) 685
AfaI GTAC 6 cut(s) 284, 628, 802, 856, 919, 978
AfiI CCNNNNNNNGG 3 cut(s) 132, 683, 792
AgsI TTSAA 4 cut(s) 337, 461, 599, 766
AhlI ACTAGT 1 cut(s) 914
AjnI CCWGG 4 cut(s) 100, 187, 470, 785
AluBI AGCT 5 cut(s) 248, 272, 278, 346, 365
AluI AGCT 5 cut(s) 248, 272, 278, 346, 365
Alw26I GTCTC 3 cut(s) 527, 836, 1008
AlwI GGATC 2 cut(s) 424, 993
AoxI GGCC 2 cut(s) 8, 685
ApeKI GCWGC 4 cut(s) 147, 269, 779, 965
AspS9I GGNCC 3 cut(s) 44, 98, 528
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 3 cut(s) 44, 98, 528
AxyI CCTNAGG 2 cut(s) 57, 393
BalI TGGCCA 1 cut(s) 687
BanII GRGCYC 1 cut(s) 677
BbvI GCAGC 4 cut(s) 159, 281, 766, 952
BccI CCATC 6 cut(s) 162, 387, 597, 661, 739, 988
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BciT130I CCWGG 4 cut(s) 102, 189, 472, 787
BciVI GTATCC 1 cut(s) 399
BclI TGATCA 2 cut(s) 370, 709
BcoDI GTCTC 3 cut(s) 527, 836, 1008
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 3 cut(s) 798, 915, 980
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 823
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 4 cut(s) 148, 270, 780, 966
BlsI GCNGC 4 cut(s) 149, 271, 781, 967
BmcAI AGTACT 4 cut(s) 628, 802, 919, 978
Bme1390I CCNGG 4 cut(s) 102, 189, 472, 787
Bme18I GGWCC 3 cut(s) 44, 98, 528
BmgT120I GGNCC 3 cut(s) 44, 98, 528
BmrFI CCNGG 4 cut(s) 102, 189, 472, 787
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 575
BmuI ACTGGG 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 332, 959
Bsa29I ATCGAT 1 cut(s) 743
BsaBI GATNNNNATC 1 cut(s) 714
BsaJI CCNNGG 3 cut(s) 47, 786, 1014
BsaWI WCCGGW 1 cut(s) 551
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 904, 934
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 683, 792
Bse1I ACTGG 3 cut(s) 136, 326, 538
Bse21I CCTNAGG 2 cut(s) 57, 393
Bse8I GATNNNNATC 1 cut(s) 714
BseBI CCWGG 4 cut(s) 102, 189, 472, 787
BseCI ATCGAT 1 cut(s) 743
BseDI CCNNGG 3 cut(s) 47, 786, 1014
BseGI GGATG 5 cut(s) 234, 566, 608, 612, 961
BseJI GATNNNNATC 1 cut(s) 714
BseLI CCNNNNNNNGG 3 cut(s) 132, 683, 792
BseMII CTCAG 6 cut(s) 48, 196, 407, 532, 538, 831
BseNI ACTGG 3 cut(s) 136, 326, 538
BseRI GAGGAG 4 cut(s) 74, 535, 538, 912
BseXI GCAGC 4 cut(s) 159, 281, 766, 952
BseYI CCCAGC 1 cut(s) 968
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 2 cut(s) 10, 687
BshVI ATCGAT 1 cut(s) 743
BsiSI CCGG 1 cut(s) 552
BslFI GGGAC 2 cut(s) 104, 803
BslI CCNNNNNNNGG 3 cut(s) 132, 683, 792
BsmAI GTCTC 3 cut(s) 527, 836, 1008
BsmFI GGGAC 2 cut(s) 104, 803
BsnI GGCC 2 cut(s) 10, 687
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 6 cut(s) 370, 416, 661, 709, 715, 985
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 589
BspANI GGCC 2 cut(s) 10, 687
BspCNI CTCAG 6 cut(s) 49, 195, 406, 531, 537, 832
BspDI ATCGAT 1 cut(s) 743
BspFNI CGCG 1 cut(s) 589
BspHI TCATGA 3 cut(s) 217, 712, 727
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 2 cut(s) 424, 993
BsrI ACTGG 3 cut(s) 136, 326, 538
BssECI CCNNGG 3 cut(s) 47, 786, 1014
BssMI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
BssT1I CCWWGG 2 cut(s) 47, 1014
Bst2UI CCWGG 4 cut(s) 102, 189, 472, 787
Bst6I CTCTTC 2 cut(s) 462, 663
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 7 cut(s) 57, 164, 182, 393, 518, 524, 840
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 790
BstF5I GGATG 5 cut(s) 234, 566, 608, 612, 961
BstFNI CGCG 1 cut(s) 589
BstKTI GATC 6 cut(s) 373, 419, 664, 712, 718, 988
BstMAI GTCTC 3 cut(s) 527, 836, 1008
BstMBI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
BstMWI GCNNNNNNNGC 2 cut(s) 156, 275
BstNI CCWGG 4 cut(s) 102, 189, 472, 787
BstSCI CCNGG 4 cut(s) 100, 187, 470, 785
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 4 cut(s) 159, 281, 766, 952
BstXI CCANNNNNNTGG 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 743
Bsu36I CCTNAGG 2 cut(s) 57, 393
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 2 cut(s) 10, 687
BsuTUI ATCGAT 1 cut(s) 743
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 234, 566, 608, 612, 961
BtsIMutI CAGTG 1 cut(s) 129
BtuMI TCGCGA 1 cut(s) 589
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 1 cut(s) 246
CciI TCATGA 3 cut(s) 217, 712, 727
Cfr13I GGNCC 3 cut(s) 44, 98, 528
ClaI ATCGAT 1 cut(s) 743
Csp6I GTAC 6 cut(s) 283, 627, 801, 855, 918, 977
CviAII CATG 6 cut(s) 48, 95, 218, 500, 713, 728
CviQI GTAC 6 cut(s) 283, 627, 801, 855, 918, 977
DdeI CTNAG 7 cut(s) 57, 164, 182, 393, 518, 524, 840
DpnI GATC 6 cut(s) 372, 418, 663, 711, 717, 987
DpnII GATC 6 cut(s) 370, 416, 661, 709, 715, 985
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 462, 663
EarI CTCTTC 2 cut(s) 462, 663
Eco130I CCWWGG 2 cut(s) 47, 1014
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 677
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 44, 98, 528
Eco81I CCTNAGG 2 cut(s) 57, 393
EcoNI CCTNNNNNAGG 1 cut(s) 790
EcoRII CCWGG 4 cut(s) 100, 187, 470, 785
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 47, 1014
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 677
ErhI CCWWGG 2 cut(s) 47, 1014
FaeI CATG 6 cut(s) 51, 98, 221, 503, 716, 731
FaqI GGGAC 2 cut(s) 104, 803
FatI CATG 6 cut(s) 47, 94, 217, 499, 712, 727
FbaI TGATCA 2 cut(s) 370, 709
Fnu4HI GCNGC 4 cut(s) 148, 270, 780, 966
FokI GGATG 5 cut(s) 241, 553, 615, 619, 968
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 4 cut(s) 148, 270, 780, 966
FspBI CTAG 3 cut(s) 798, 915, 980
GluI GCNGC 4 cut(s) 148, 270, 780, 966
GsaI CCCAGC 1 cut(s) 972
HaeIII GGCC 2 cut(s) 10, 687
HapII CCGG 1 cut(s) 552
Hin1II CATG 6 cut(s) 51, 98, 221, 503, 716, 731
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 6 cut(s) 192, 355, 431, 591, 740, 844
HpaII CCGG 1 cut(s) 552
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 3 cut(s) 185, 430, 841
HpyAV CCTTC 5 cut(s) 19, 218, 593, 695, 763
HpyCH4V TGCA 4 cut(s) 147, 159, 244, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 275
HpyF3I CTNAG 7 cut(s) 57, 164, 182, 393, 518, 524, 840
Hsp92II CATG 6 cut(s) 51, 98, 221, 503, 716, 731
Ksp22I TGATCA 2 cut(s) 370, 709
Kzo9I GATC 6 cut(s) 370, 416, 661, 709, 715, 985
Lsp1109I GCAGC 4 cut(s) 159, 281, 766, 952
LweI GCATC 1 cut(s) 575
MaeI CTAG 3 cut(s) 798, 915, 980
MaeIII GTNAC 3 cut(s) 257, 443, 905
MalI GATC 6 cut(s) 372, 418, 663, 711, 717, 987
MboI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
MboII GAAGA 8 cut(s) 233, 349, 352, 364, 449, 680, 710, 892
MhlI GDGCHC 1 cut(s) 677
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 7 cut(s) 106, 234, 316, 808, 814, 998, 1008
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 3 cut(s) 425, 585, 838
Mox20I TGGCCA 1 cut(s) 687
Mph1103I ATGCAT 1 cut(s) 568
MscI TGGCCA 1 cut(s) 687
MseI TTAA 1 cut(s) 774
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 4 cut(s) 102, 189, 472, 787
MvaI CCWGG 4 cut(s) 102, 189, 472, 787
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 2 cut(s) 156, 275
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 370, 416, 661, 709, 715, 985
NlaIII CATG 6 cut(s) 51, 98, 221, 503, 716, 731
NmuCI GTSAC 1 cut(s) 905
NruI TCGCGA 1 cut(s) 589
NsiI ATGCAT 1 cut(s) 568
PagI TCATGA 3 cut(s) 217, 712, 727
PaqCI CACCTGC 1 cut(s) 823
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 3 cut(s) 192, 355, 740
PflMI CCANNNNNTGG 1 cut(s) 683
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 4 cut(s) 149, 271, 781, 967
PleI GAGTC 3 cut(s) 425, 585, 838
PpsI GAGTC 3 cut(s) 425, 585, 838
Psp6I CCWGG 4 cut(s) 100, 187, 470, 785
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 4 cut(s) 100, 187, 470, 785
PspPI GGNCC 3 cut(s) 44, 98, 528
PsrI GAACNNNNNNTAC 2 cut(s) 805, 837
PvuII CAGCTG 1 cut(s) 365
RruI TCGCGA 1 cut(s) 589
RsaI GTAC 6 cut(s) 284, 628, 802, 856, 919, 978
RsaNI GTAC 6 cut(s) 283, 627, 801, 855, 918, 977
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 4 cut(s) 148, 270, 780, 966
Sau3AI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
Sau96I GGNCC 3 cut(s) 44, 98, 528
ScaI AGTACT 4 cut(s) 628, 802, 919, 978
SchI GAGTC 3 cut(s) 425, 585, 838
ScrFI CCNGG 4 cut(s) 102, 189, 472, 787
SduI GDGCHC 1 cut(s) 677
SfaNI GCATC 1 cut(s) 575
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 3 cut(s) 44, 98, 528
SmlI CTYRAG 2 cut(s) 347, 938
SmoI CTYRAG 2 cut(s) 347, 938
SpeI ACTAGT 1 cut(s) 914
Sse9I AATT 7 cut(s) 106, 234, 316, 808, 814, 998, 1008
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 3 cut(s) 798, 915, 980
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 4 cut(s) 100, 187, 470, 785
StyI CCWWGG 2 cut(s) 47, 1014
TaqI TCGA 6 cut(s) 506, 660, 743, 756, 818, 988
TasI AATT 7 cut(s) 106, 234, 316, 808, 814, 998, 1008
TatI WGTACW 4 cut(s) 626, 800, 917, 976
TfiI GAWTC 3 cut(s) 192, 355, 740
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 4 cut(s) 147, 269, 779, 965
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 5 cut(s) 227, 234, 714, 744, 972
TspRI CASTG 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 3 cut(s) 44, 98, 528
XagI CCTNNNNNAGG 1 cut(s) 790
XspI CTAG 3 cut(s) 798, 915, 980
ZrmI AGTACT 4 cut(s) 628, 802, 919, 978
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.