RchiOBHm_Chr3g0495721
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009968
Physical Location & Seq
Forward (+)
45702345 .. 45703881
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45810

Sequence Viewer

Length: 1029 bp
ATGGGAAGGCCTCCTTGCTGTGAGAAGGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAGGATATCATTCTTGTTTCTTACATCCAAGAACATGGTCCAGGCAATTGGAGAGCAGTGCCAGCCAACACTGGGTTGTTGAGGTGCAGCAAGAGTTGCAGGCTTAGATGGACTAACTATCTCAGACCTGGAATCAAGAGAGGGAACTTCACACCTCATGAAGAAGGGATGATAATTCATTTGCAAGCTTTATTGGGTAACAAATGGGCAGCTATAGCTTCTTACCTCCCACAAAGAACAGACAATGATATAAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTCAAGAAGATTCAGTCAGCTGTTGATCATCATCAGCAGCAGCAACCTCAGGCTCAAAATAATATATTGGGATCATCTATATCAGACTCGACAACAAGTAATTCTACTCATCATCAATATCCTCACAGGAATAATGTCAATGACATCACAAGCCATGCCTCGACAACAACTCTCAGTCTCAGGTCCATAAACCAGTCCTCCTCCTCCTCCTCCGGTGGTATATATGCCTCCAGCACCGAGAACATTTCGCGACTTCTTGAAGGATGGATGAGAACCTCGCCAAAGAGTACTTACGCTAACCTTGTAACCAAACCATCTCATGATCGTGAAGAAAACCCAAAAGGTGGCCAAGACCAAGATGAAGGCTGTGATCATGATCTTTTATCTCATGAAGCATTCCAATCGATTTTGTCCTTCGACAACTTGAATAATGTTAATGCTGCTTCCTGGGACAGGTCTAGTACTACTAATTGTGATTCTAGTTCTATCAAGCAGGTGTCTCAAACCCAATGTAGTACTGCAGCTGCCATTGCAAATGAGAAGGATAAGCACATTATTAGAGCCTGTGAAAGCACGAACACTCCTCCATTATCATTTCTTGAGAAATGGCTTCTGGATGAAAGTGCTGCTGGACAAGTACTAGAGGATCGAATGATGGAATTGTCTCCAATTTCCCTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

342

Amino Acids

38.03

Weight (kDa)

7.22

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 7.1e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 9.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 119 2.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 829
Acc36I ACCTGC 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 689
AccII CGCG 1 cut(s) 595
AclWI GGATC 2 cut(s) 424, 999
AcoI YGGCCR 1 cut(s) 691
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 4 cut(s) 634, 808, 862, 984
AfiI CCNNNNNNNGG 3 cut(s) 132, 689, 798
AgsI TTSAA 3 cut(s) 337, 605, 772
AjnI CCWGG 4 cut(s) 100, 187, 791, 1020
AluBI AGCT 6 cut(s) 248, 272, 278, 346, 365, 869
AluI AGCT 6 cut(s) 248, 272, 278, 346, 365, 869
Alw26I GTCTC 3 cut(s) 527, 849, 1014
AlwI GGATC 2 cut(s) 424, 999
AoxI GGCC 2 cut(s) 8, 691
ApeKI GCWGC 8 cut(s) 147, 269, 382, 385, 785, 866, 869, 971
AspS9I GGNCC 3 cut(s) 44, 98, 528
AvaII GGWCC 3 cut(s) 44, 98, 528
AxyI CCTNAGG 1 cut(s) 393
BalI TGGCCA 1 cut(s) 693
BbvI GCAGC 8 cut(s) 159, 281, 394, 397, 772, 856, 878, 958
BccI CCATC 4 cut(s) 162, 603, 667, 994
BcgI CGANNNNNNTGC 2 cut(s) 729, 763
BciT130I CCWGG 4 cut(s) 102, 189, 793, 1022
BclI TGATCA 2 cut(s) 370, 715
BcoDI GTCTC 3 cut(s) 527, 849, 1014
BfaI CTAG 3 cut(s) 804, 825, 986
BfmI CTRYAG 2 cut(s) 273, 864
BfuAI ACCTGC 1 cut(s) 829
BisI GCNGC 8 cut(s) 148, 270, 383, 386, 786, 867, 870, 972
BlsI GCNGC 8 cut(s) 149, 271, 384, 387, 787, 868, 871, 973
BmcAI AGTACT 4 cut(s) 634, 808, 862, 984
Bme1390I CCNGG 4 cut(s) 102, 189, 793, 1022
Bme18I GGWCC 3 cut(s) 44, 98, 528
BmgT120I GGNCC 3 cut(s) 44, 98, 528
BmrFI CCNGG 4 cut(s) 102, 189, 793, 1022
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 559
BpuEI CTTGAG 2 cut(s) 332, 965
Bsa29I ATCGAT 1 cut(s) 749
BsaBI GATNNNNATC 2 cut(s) 375, 720
BsaJI CCNNGG 3 cut(s) 47, 792, 1020
BsaWI WCCGGW 1 cut(s) 557
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 910, 940
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 689, 798
Bse1I ACTGG 3 cut(s) 136, 326, 538
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 2 cut(s) 375, 720
BseBI CCWGG 4 cut(s) 102, 189, 793, 1022
BseCI ATCGAT 1 cut(s) 749
BseDI CCNNGG 3 cut(s) 47, 792, 1020
BseGI GGATG 5 cut(s) 84, 234, 614, 618, 967
BseJI GATNNNNATC 2 cut(s) 375, 720
BseLI CCNNNNNNNGG 3 cut(s) 132, 689, 798
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 4 cut(s) 196, 407, 532, 538
BseNI ACTGG 3 cut(s) 136, 326, 538
BseRI GAGGAG 5 cut(s) 535, 538, 541, 544, 918
BseXI GCAGC 8 cut(s) 159, 281, 394, 397, 772, 856, 878, 958
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 595
BshFI GGCC 2 cut(s) 10, 693
BshVI ATCGAT 1 cut(s) 749
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 3 cut(s) 132, 689, 798
BsmAI GTCTC 3 cut(s) 527, 849, 1014
BsmFI GGGAC 1 cut(s) 809
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 2 cut(s) 10, 693
Bsp143I GATC 6 cut(s) 370, 416, 667, 715, 721, 991
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 595
BspANI GGCC 2 cut(s) 10, 693
BspCNI CTCAG 4 cut(s) 195, 406, 531, 537
BspDI ATCGAT 1 cut(s) 749
BspFNI CGCG 1 cut(s) 595
BspHI TCATGA 4 cut(s) 217, 664, 718, 733
BspMAI CTGCAG 1 cut(s) 868
BspMI ACCTGC 1 cut(s) 829
BspPI GGATC 2 cut(s) 424, 999
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 3 cut(s) 136, 326, 538
BssECI CCNNGG 3 cut(s) 47, 792, 1020
BssMI GATC 6 cut(s) 370, 416, 667, 715, 721, 991
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 4 cut(s) 102, 189, 793, 1022
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 123, 161, 246
BstDEI CTNAG 5 cut(s) 164, 182, 393, 518, 524
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 796
BstF5I GGATG 5 cut(s) 84, 234, 614, 618, 967
BstFNI CGCG 1 cut(s) 595
BstKTI GATC 6 cut(s) 373, 419, 670, 718, 724, 994
BstMAI GTCTC 3 cut(s) 527, 849, 1014
BstMBI GATC 6 cut(s) 370, 416, 667, 715, 721, 991
BstMWI GCNNNNNNNGC 4 cut(s) 122, 156, 275, 875
BstNI CCWGG 4 cut(s) 102, 189, 793, 1022
BstSCI CCNGG 4 cut(s) 100, 187, 791, 1020
BstSFI CTRYAG 2 cut(s) 273, 864
BstUI CGCG 1 cut(s) 595
BstV1I GCAGC 8 cut(s) 159, 281, 394, 397, 772, 856, 878, 958
BstXI CCANNNNNNTGG 2 cut(s) 95, 108
Bsu15I ATCGAT 1 cut(s) 749
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 2 cut(s) 10, 693
BsuTUI ATCGAT 1 cut(s) 749
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 84, 234, 614, 618, 967
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 129
BtuMI TCGCGA 1 cut(s) 595
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 3 cut(s) 123, 161, 246
CciI TCATGA 4 cut(s) 217, 664, 718, 733
Cfr13I GGNCC 3 cut(s) 44, 98, 528
ClaI ATCGAT 1 cut(s) 749
Csp6I GTAC 4 cut(s) 633, 807, 861, 983
CviAII CATG 7 cut(s) 48, 95, 218, 500, 665, 719, 734
CviQI GTAC 4 cut(s) 633, 807, 861, 983
DdeI CTNAG 5 cut(s) 164, 182, 393, 518, 524
DpnI GATC 6 cut(s) 372, 418, 669, 717, 723, 993
DpnII GATC 6 cut(s) 370, 416, 667, 715, 721, 991
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 10
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 44, 98, 528
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 796
EcoRII CCWGG 4 cut(s) 100, 187, 791, 1020
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 7 cut(s) 51, 98, 221, 503, 668, 722, 737
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 809
FatI CATG 7 cut(s) 47, 94, 217, 499, 664, 718, 733
FbaI TGATCA 2 cut(s) 370, 715
Fnu4HI GCNGC 8 cut(s) 148, 270, 383, 386, 786, 867, 870, 972
FokI GGATG 5 cut(s) 71, 241, 621, 625, 974
Fsp4HI GCNGC 8 cut(s) 148, 270, 383, 386, 786, 867, 870, 972
FspBI CTAG 3 cut(s) 804, 825, 986
GluI GCNGC 8 cut(s) 148, 270, 383, 386, 786, 867, 870, 972
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 2 cut(s) 10, 693
HapII CCGG 1 cut(s) 558
Hin1II CATG 7 cut(s) 51, 98, 221, 503, 668, 722, 737
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 4 cut(s) 192, 355, 431, 821
HpaII CCGG 1 cut(s) 558
Hpy188I TCNGA 2 cut(s) 185, 430
HpyAV CCTTC 6 cut(s) 19, 218, 599, 701, 769, 880
HpyCH4V TGCA 5 cut(s) 147, 159, 244, 866, 878
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 156, 275, 875
HpyF3I CTNAG 5 cut(s) 164, 182, 393, 518, 524
Hsp92II CATG 7 cut(s) 51, 98, 221, 503, 668, 722, 737
Ksp22I TGATCA 2 cut(s) 370, 715
Kzo9I GATC 6 cut(s) 370, 416, 667, 715, 721, 991
Lsp1109I GCAGC 8 cut(s) 159, 281, 394, 397, 772, 856, 878, 958
LweI GCATC 1 cut(s) 42
MaeI CTAG 3 cut(s) 804, 825, 986
MaeIII GTNAC 2 cut(s) 257, 649
MalI GATC 6 cut(s) 372, 418, 669, 717, 723, 993
MboI GATC 6 cut(s) 370, 416, 667, 715, 721, 991
MboII GAAGA 6 cut(s) 71, 233, 349, 352, 364, 686
MfeI CAATTG 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 7 cut(s) 106, 234, 316, 445, 814, 1004, 1014
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 1 cut(s) 425
Mox20I TGGCCA 1 cut(s) 693
MscI TGGCCA 1 cut(s) 693
MseI TTAA 1 cut(s) 780
MslI CAYNNNNRTG 1 cut(s) 669
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 365, 869
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 4 cut(s) 102, 189, 793, 1022
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 4 cut(s) 102, 189, 793, 1022
MvnI CGCG 1 cut(s) 595
MwoI GCNNNNNNNGC 4 cut(s) 122, 156, 275, 875
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 370, 416, 667, 715, 721, 991
NlaIII CATG 7 cut(s) 51, 98, 221, 503, 668, 722, 737
NruI TCGCGA 1 cut(s) 595
PagI TCATGA 4 cut(s) 217, 664, 718, 733
PaqCI CACCTGC 1 cut(s) 829
PceI AGGCCT 1 cut(s) 10
PctI GAATGC 1 cut(s) 740
PfeI GAWTC 3 cut(s) 192, 355, 821
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 8 cut(s) 149, 271, 384, 387, 787, 868, 871, 973
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 4 cut(s) 100, 187, 791, 1020
PspGI CCWGG 4 cut(s) 100, 187, 791, 1020
PspPI GGNCC 3 cut(s) 44, 98, 528
PstI CTGCAG 1 cut(s) 868
PvuII CAGCTG 2 cut(s) 365, 869
RruI TCGCGA 1 cut(s) 595
RsaI GTAC 4 cut(s) 634, 808, 862, 984
RsaNI GTAC 4 cut(s) 633, 807, 861, 983
RseI CAYNNNNRTG 1 cut(s) 669
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 8 cut(s) 148, 270, 383, 386, 786, 867, 870, 972
Sau3AI GATC 6 cut(s) 370, 416, 667, 715, 721, 991
Sau96I GGNCC 3 cut(s) 44, 98, 528
ScaI AGTACT 4 cut(s) 634, 808, 862, 984
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 4 cut(s) 102, 189, 793, 1022
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 2 cut(s) 273, 864
SinI GGWCC 3 cut(s) 44, 98, 528
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 347, 944
SmoI CTYRAG 2 cut(s) 347, 944
Sse9I AATT 7 cut(s) 106, 234, 316, 445, 814, 1004, 1014
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 3 cut(s) 804, 825, 986
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 4 cut(s) 100, 187, 791, 1020
StyI CCWWGG 1 cut(s) 47
TaqI TCGA 5 cut(s) 434, 506, 749, 762, 994
TasI AATT 7 cut(s) 106, 234, 316, 445, 814, 1004, 1014
TatI WGTACW 4 cut(s) 632, 806, 860, 982
TfiI GAWTC 3 cut(s) 192, 355, 821
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TscAI CASTG 2 cut(s) 123, 136
TseI GCWGC 8 cut(s) 147, 269, 382, 385, 785, 866, 869, 971
TspDTI ATGAA 5 cut(s) 227, 234, 720, 750, 978
TspRI CASTG 2 cut(s) 123, 136
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 3 cut(s) 44, 98, 528
XagI CCTNNNNNAGG 1 cut(s) 796
XspI CTAG 3 cut(s) 804, 825, 986
ZrmI AGTACT 4 cut(s) 634, 808, 862, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.