Rmu_sc0005750.1_g000003
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005750.1
OG0009968
Physical Location & Seq
Reverse (-)
21324 .. 22581
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005750.1_g000003.1.cds

Sequence Viewer

Length: 1023 bp
atgggaaggcctccttgctgtgagaaggttggcatcaagaaaggtccatggacacctgaagaggatatcattcttgtttcttacatccaagaacatggtccaggcaattggagagcagtgccagccaacactgggttgttgaggtgcagcaagagttgcaggcttagatggactaactatctcagacctggaatcaagagagggaacttcacacctcatgaagaagggatgataattcatttgcaagctttattgggtaacaaatgggcagctatagcttcttacctcccacaaagaacagacaatgatataaagaattactggaacacccacttgaagaagaagctcaagaagattcagtcagctgttgatcatcatcatcagcagcaacctcaggctcaaaataatatattgggatcatctatatcagactcgaccacaagtaattctactcatcatcaatatcctcacaggaataatgtcaatgacatcacaagccatgcctcgacaacaactctcagtctcaggtccataaaccagtcctcctcctccggtggtatatatgcctccagtaccgagaacatttcgcgacttcttgaaggatggatgagaacctccccaaagagtactaacgctaaccttgtaaccaaaccatctcatgatcgtgaagaaaacccaaaaggtggccaagaccaagatgaaggctgtgatcatgatcttttatctcatgaagcattcgaatcgattttgtccttcgataacttgaataatgttaatgctgcttcctgggacaggtctagtactactaattgtgattctagttctatcaagcaggtgtctcaaacccaatgtagtactgcagctgccattgcaaatgagaaggataagcacattattagagcctgtgaaagcacgaacactcctccattatcatttcttgagaaatggcttctggatgaaagtgctgctggacaagtactagaggatcgaatgatggaattgtctccaatttccctggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

340

Amino Acids

37.82

Weight (kDa)

6.94

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 823
Acc36I ACCTGC 1 cut(s) 823
AccB7I CCANNNNNTGG 1 cut(s) 683
AccII CGCG 1 cut(s) 589
AclWI GGATC 2 cut(s) 424, 993
AcoI YGGCCR 1 cut(s) 685
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 5 cut(s) 574, 628, 802, 856, 978
AfiI CCNNNNNNNGG 3 cut(s) 132, 683, 792
AgsI TTSAA 3 cut(s) 337, 599, 766
AjnI CCWGG 4 cut(s) 100, 187, 785, 1014
AluBI AGCT 6 cut(s) 248, 272, 278, 346, 365, 863
AluI AGCT 6 cut(s) 248, 272, 278, 346, 365, 863
Alw26I GTCTC 3 cut(s) 527, 843, 1008
AlwI GGATC 2 cut(s) 424, 993
AoxI GGCC 2 cut(s) 8, 685
ApeKI GCWGC 7 cut(s) 147, 269, 385, 779, 860, 863, 965
AspS9I GGNCC 3 cut(s) 44, 98, 528
AsuII TTCGAA 1 cut(s) 738
AvaII GGWCC 3 cut(s) 44, 98, 528
AxyI CCTNAGG 1 cut(s) 393
BalI TGGCCA 1 cut(s) 687
BbvI GCAGC 7 cut(s) 159, 281, 397, 766, 850, 872, 952
BccI CCATC 4 cut(s) 162, 597, 661, 988
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BciT130I CCWGG 4 cut(s) 102, 189, 787, 1016
BclI TGATCA 2 cut(s) 370, 709
BcoDI GTCTC 3 cut(s) 527, 843, 1008
BfaI CTAG 3 cut(s) 798, 819, 980
BfmI CTRYAG 2 cut(s) 273, 858
BfuAI ACCTGC 1 cut(s) 823
BisI GCNGC 7 cut(s) 148, 270, 386, 780, 861, 864, 966
BlsI GCNGC 7 cut(s) 149, 271, 387, 781, 862, 865, 967
BmcAI AGTACT 4 cut(s) 628, 802, 856, 978
Bme1390I CCNGG 4 cut(s) 102, 189, 787, 1016
Bme18I GGWCC 3 cut(s) 44, 98, 528
BmgT120I GGNCC 3 cut(s) 44, 98, 528
BmrFI CCNGG 4 cut(s) 102, 189, 787, 1016
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 553
Bpu14I TTCGAA 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 332, 959
Bsa29I ATCGAT 1 cut(s) 743
BsaBI GATNNNNATC 2 cut(s) 375, 714
BsaJI CCNNGG 3 cut(s) 47, 786, 1014
BsaWI WCCGGW 1 cut(s) 551
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 904, 934
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 683, 792
Bse1I ACTGG 4 cut(s) 136, 326, 538, 570
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 2 cut(s) 375, 714
BseBI CCWGG 4 cut(s) 102, 189, 787, 1016
BseCI ATCGAT 1 cut(s) 743
BseDI CCNNGG 3 cut(s) 47, 786, 1014
BseGI GGATG 5 cut(s) 84, 234, 608, 612, 961
BseJI GATNNNNATC 2 cut(s) 375, 714
BseLI CCNNNNNNNGG 3 cut(s) 132, 683, 792
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 4 cut(s) 196, 407, 532, 538
BseNI ACTGG 4 cut(s) 136, 326, 538, 570
BseRI GAGGAG 3 cut(s) 535, 538, 912
BseXI GCAGC 7 cut(s) 159, 281, 397, 766, 850, 872, 952
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 2 cut(s) 10, 687
BshVI ATCGAT 1 cut(s) 743
BsiSI CCGG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 3 cut(s) 132, 683, 792
BsmAI GTCTC 3 cut(s) 527, 843, 1008
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 2 cut(s) 10, 687
Bsp119I TTCGAA 1 cut(s) 738
Bsp143I GATC 6 cut(s) 370, 416, 661, 709, 715, 985
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 589
BspANI GGCC 2 cut(s) 10, 687
BspCNI CTCAG 4 cut(s) 195, 406, 531, 537
BspDI ATCGAT 1 cut(s) 743
BspFNI CGCG 1 cut(s) 589
BspHI TCATGA 4 cut(s) 217, 658, 712, 727
BspMAI CTGCAG 1 cut(s) 862
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 2 cut(s) 424, 993
BspT104I TTCGAA 1 cut(s) 738
BsrDI GCAATG 1 cut(s) 867
BsrI ACTGG 4 cut(s) 136, 326, 538, 570
BssECI CCNNGG 3 cut(s) 47, 786, 1014
BssMI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 4 cut(s) 102, 189, 787, 1016
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 3 cut(s) 123, 161, 246
BstDEI CTNAG 5 cut(s) 164, 182, 393, 518, 524
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 790
BstF5I GGATG 5 cut(s) 84, 234, 608, 612, 961
BstFNI CGCG 1 cut(s) 589
BstKTI GATC 6 cut(s) 373, 419, 664, 712, 718, 988
BstMAI GTCTC 3 cut(s) 527, 843, 1008
BstMBI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
BstMWI GCNNNNNNNGC 4 cut(s) 122, 156, 275, 869
BstNI CCWGG 4 cut(s) 102, 189, 787, 1016
BstSCI CCNGG 4 cut(s) 100, 187, 785, 1014
BstSFI CTRYAG 2 cut(s) 273, 858
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 7 cut(s) 159, 281, 397, 766, 850, 872, 952
BstXI CCANNNNNNTGG 2 cut(s) 95, 108
Bsu15I ATCGAT 1 cut(s) 743
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 2 cut(s) 10, 687
BsuTUI ATCGAT 1 cut(s) 743
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 84, 234, 608, 612, 961
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 129
BtuMI TCGCGA 1 cut(s) 589
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 3 cut(s) 123, 161, 246
CciI TCATGA 4 cut(s) 217, 658, 712, 727
Cfr13I GGNCC 3 cut(s) 44, 98, 528
ClaI ATCGAT 1 cut(s) 743
Csp6I GTAC 5 cut(s) 573, 627, 801, 855, 977
CviAII CATG 7 cut(s) 48, 95, 218, 500, 659, 713, 728
CviQI GTAC 5 cut(s) 573, 627, 801, 855, 977
DdeI CTNAG 5 cut(s) 164, 182, 393, 518, 524
DpnI GATC 6 cut(s) 372, 418, 663, 711, 717, 987
DpnII GATC 6 cut(s) 370, 416, 661, 709, 715, 985
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 10
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 44, 98, 528
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 790
EcoRII CCWGG 4 cut(s) 100, 187, 785, 1014
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 7 cut(s) 51, 98, 221, 503, 662, 716, 731
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 803
FatI CATG 7 cut(s) 47, 94, 217, 499, 658, 712, 727
FbaI TGATCA 2 cut(s) 370, 709
Fnu4HI GCNGC 7 cut(s) 148, 270, 386, 780, 861, 864, 966
FokI GGATG 5 cut(s) 71, 241, 615, 619, 968
Fsp4HI GCNGC 7 cut(s) 148, 270, 386, 780, 861, 864, 966
FspBI CTAG 3 cut(s) 798, 819, 980
GluI GCNGC 7 cut(s) 148, 270, 386, 780, 861, 864, 966
GsuI CTGGAG 1 cut(s) 553
HaeIII GGCC 2 cut(s) 10, 687
HapII CCGG 1 cut(s) 552
Hin1II CATG 7 cut(s) 51, 98, 221, 503, 662, 716, 731
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 5 cut(s) 192, 355, 431, 740, 815
HpaII CCGG 1 cut(s) 552
Hpy188I TCNGA 2 cut(s) 185, 430
HpyAV CCTTC 6 cut(s) 19, 218, 593, 695, 763, 874
HpyCH4V TGCA 5 cut(s) 147, 159, 244, 860, 872
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 156, 275, 869
HpyF3I CTNAG 5 cut(s) 164, 182, 393, 518, 524
Hsp92II CATG 7 cut(s) 51, 98, 221, 503, 662, 716, 731
Ksp22I TGATCA 2 cut(s) 370, 709
Kzo9I GATC 6 cut(s) 370, 416, 661, 709, 715, 985
Lsp1109I GCAGC 7 cut(s) 159, 281, 397, 766, 850, 872, 952
LweI GCATC 1 cut(s) 42
MaeI CTAG 3 cut(s) 798, 819, 980
MaeIII GTNAC 2 cut(s) 257, 643
MalI GATC 6 cut(s) 372, 418, 663, 711, 717, 987
MboI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
MboII GAAGA 6 cut(s) 71, 233, 349, 352, 364, 680
MfeI CAATTG 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 7 cut(s) 106, 234, 316, 445, 808, 998, 1008
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 1 cut(s) 425
Mox20I TGGCCA 1 cut(s) 687
MscI TGGCCA 1 cut(s) 687
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 663
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 2 cut(s) 365, 863
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 4 cut(s) 102, 189, 787, 1016
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 4 cut(s) 102, 189, 787, 1016
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 4 cut(s) 122, 156, 275, 869
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 370, 416, 661, 709, 715, 985
NlaIII CATG 7 cut(s) 51, 98, 221, 503, 662, 716, 731
NruI TCGCGA 1 cut(s) 589
NspV TTCGAA 1 cut(s) 738
PagI TCATGA 4 cut(s) 217, 658, 712, 727
PaqCI CACCTGC 1 cut(s) 823
PceI AGGCCT 1 cut(s) 10
PctI GAATGC 1 cut(s) 734
PfeI GAWTC 4 cut(s) 192, 355, 740, 815
PflMI CCANNNNNTGG 1 cut(s) 683
PkrI GCNGC 7 cut(s) 149, 271, 387, 781, 862, 865, 967
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 4 cut(s) 100, 187, 785, 1014
PspGI CCWGG 4 cut(s) 100, 187, 785, 1014
PspPI GGNCC 3 cut(s) 44, 98, 528
PstI CTGCAG 1 cut(s) 862
PvuII CAGCTG 2 cut(s) 365, 863
RruI TCGCGA 1 cut(s) 589
RsaI GTAC 5 cut(s) 574, 628, 802, 856, 978
RsaNI GTAC 5 cut(s) 573, 627, 801, 855, 977
RseI CAYNNNNRTG 1 cut(s) 663
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 7 cut(s) 148, 270, 386, 780, 861, 864, 966
Sau3AI GATC 6 cut(s) 370, 416, 661, 709, 715, 985
Sau96I GGNCC 3 cut(s) 44, 98, 528
ScaI AGTACT 4 cut(s) 628, 802, 856, 978
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 4 cut(s) 102, 189, 787, 1016
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 2 cut(s) 273, 858
SfuI TTCGAA 1 cut(s) 738
SinI GGWCC 3 cut(s) 44, 98, 528
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 2 cut(s) 347, 938
SmoI CTYRAG 2 cut(s) 347, 938
Sse9I AATT 7 cut(s) 106, 234, 316, 445, 808, 998, 1008
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 3 cut(s) 798, 819, 980
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 4 cut(s) 100, 187, 785, 1014
StyI CCWWGG 1 cut(s) 47
TaqI TCGA 6 cut(s) 434, 506, 738, 743, 756, 988
TasI AATT 7 cut(s) 106, 234, 316, 445, 808, 998, 1008
TatI WGTACW 4 cut(s) 626, 800, 854, 976
TfiI GAWTC 4 cut(s) 192, 355, 740, 815
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 2 cut(s) 123, 136
TseI GCWGC 7 cut(s) 147, 269, 385, 779, 860, 863, 965
TspDTI ATGAA 5 cut(s) 227, 234, 714, 744, 972
TspRI CASTG 2 cut(s) 123, 136
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 3 cut(s) 44, 98, 528
XagI CCTNNNNNAGG 1 cut(s) 790
XspI CTAG 3 cut(s) 798, 819, 980
ZrmI AGTACT 4 cut(s) 628, 802, 856, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.