Rh3BG358900
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009968
Physical Location & Seq
Forward (+)
43045808 .. 43047436
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG358900.1

Sequence Viewer

Length: 870 bp
ATGCTACTCTTACAATTATATCTGAATTATTTGCTATTCTTCACTTCATTTCAATCAAGTTTTCTATATACCTTACTAACTATCAATTTAATAATTATGACATATAGATGGGCAGCTATAGCTTCTTACCTCCCACAAAGAACAGACAATGATATAAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTCAAGAAGATTCAGTCAGCTGTTGATCATCATCATCAGCAGCAACCTCAGGCTCAAAATAATATATTGGGATCATCTATATCAGACTCGACCACAAGTAATTCTACTCATCATCAATATCCTCACAGGAATAATGTCAATGACATCACAAGCCATGCCTCGACAACAACTCTCAGTCTCAGGTCCATAAACCAGTCCTCCTCCTCCTCCGGTGGTATATATGCCTCCAGCACCGAGAACATTTCGCGACTTCTTGAAGGATGGATGAGAACCTCCCCAAAGAGTACTAACGCTAACCTTGTAACCAAACCATCTCATGATCGTGAAGAAAACCCAAAAGGTGGCCAAGACCAAGATGAAGGCTGTGATCATGATCTTTTATCTCATGAAGCATTCGAATCGATTTTGTCCTTCGACAACTTGAATAATGTTAATGCTGCTTCCTGGGACAGGTCTAGTACTACTAATTGTGATTCTAGTTCTATCAAGCTGGTGTCTCAAACCCAATGTAGTACTGCAGCTGCCATTGCAAATGAGAAGGATAAGCACATTATTAGAGCCTGTGAAAGCACGAACACTCCTCCATTATCATTTCTTGAGAAATGGCTTCTGGATGAAAGTGCTGCTGGACAAGAACTAGAGGATCGAATGATGGAATTGTCTCCAATTTCCCTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

289

Amino Acids

32.4

Weight (kDa)

5.92

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 36 - 60 2.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 530
AccII CGCG 1 cut(s) 436
AclWI GGATC 2 cut(s) 268, 840
AcoI YGGCCR 1 cut(s) 532
AfaI GTAC 3 cut(s) 475, 649, 703
AfiI CCNNNNNNNGG 2 cut(s) 530, 639
AgsI TTSAA 4 cut(s) 53, 181, 446, 613
AjnI CCWGG 2 cut(s) 632, 861
AluBI AGCT 6 cut(s) 116, 122, 190, 209, 679, 710
AluI AGCT 6 cut(s) 116, 122, 190, 209, 679, 710
Alw26I GTCTC 3 cut(s) 371, 690, 855
AlwI GGATC 2 cut(s) 268, 840
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 6 cut(s) 113, 229, 626, 707, 710, 812
AspS9I GGNCC 1 cut(s) 372
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 1 cut(s) 372
AxyI CCTNAGG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 534
BbvI GCAGC 6 cut(s) 125, 241, 613, 697, 719, 799
BccI CCATC 4 cut(s) 102, 444, 508, 835
BcgI CGANNNNNNTGC 2 cut(s) 570, 604
BciT130I CCWGG 2 cut(s) 634, 863
BclI TGATCA 2 cut(s) 214, 556
BcoDI GTCTC 3 cut(s) 371, 690, 855
BfaI CTAG 3 cut(s) 645, 666, 827
BfmI CTRYAG 2 cut(s) 117, 705
BisI GCNGC 6 cut(s) 114, 230, 627, 708, 711, 813
BlsI GCNGC 6 cut(s) 115, 231, 628, 709, 712, 814
BmcAI AGTACT 3 cut(s) 475, 649, 703
Bme1390I CCNGG 2 cut(s) 634, 863
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 634, 863
BpmI CTGGAG 1 cut(s) 400
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 2 cut(s) 176, 806
Bsa29I ATCGAT 1 cut(s) 590
BsaBI GATNNNNATC 2 cut(s) 219, 561
BsaJI CCNNGG 2 cut(s) 633, 861
BsaWI WCCGGW 1 cut(s) 398
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 751, 781
Bsc4I CCNNNNNNNGG 2 cut(s) 530, 639
Bse1I ACTGG 2 cut(s) 170, 382
Bse21I CCTNAGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 2 cut(s) 219, 561
BseBI CCWGG 2 cut(s) 634, 863
BseCI ATCGAT 1 cut(s) 590
BseDI CCNNGG 2 cut(s) 633, 861
BseGI GGATG 3 cut(s) 455, 459, 808
BseJI GATNNNNATC 2 cut(s) 219, 561
BseLI CCNNNNNNNGG 2 cut(s) 530, 639
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 3 cut(s) 251, 376, 382
BseNI ACTGG 2 cut(s) 170, 382
BseRI GAGGAG 4 cut(s) 379, 382, 385, 759
BseXI GCAGC 6 cut(s) 125, 241, 613, 697, 719, 799
Bsh1236I CGCG 1 cut(s) 436
BshFI GGCC 1 cut(s) 534
BshVI ATCGAT 1 cut(s) 590
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 2 cut(s) 530, 639
BsmAI GTCTC 3 cut(s) 371, 690, 855
BsmFI GGGAC 1 cut(s) 650
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 1 cut(s) 534
Bsp119I TTCGAA 1 cut(s) 585
Bsp143I GATC 6 cut(s) 214, 260, 508, 556, 562, 832
Bsp68I TCGCGA 1 cut(s) 436
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 3 cut(s) 250, 375, 381
BspDI ATCGAT 1 cut(s) 590
BspFNI CGCG 1 cut(s) 436
BspHI TCATGA 3 cut(s) 505, 559, 574
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 2 cut(s) 268, 840
BspT104I TTCGAA 1 cut(s) 585
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 2 cut(s) 170, 382
BssECI CCNNGG 2 cut(s) 633, 861
BssMI GATC 6 cut(s) 214, 260, 508, 556, 562, 832
Bst2UI CCWGG 2 cut(s) 634, 863
BstBI TTCGAA 1 cut(s) 585
BstDEI CTNAG 3 cut(s) 237, 362, 368
BstENI CCTNNNNNAGG 1 cut(s) 637
BstF5I GGATG 3 cut(s) 455, 459, 808
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 6 cut(s) 217, 263, 511, 559, 565, 835
BstMAI GTCTC 3 cut(s) 371, 690, 855
BstMBI GATC 6 cut(s) 214, 260, 508, 556, 562, 832
BstMWI GCNNNNNNNGC 2 cut(s) 119, 716
BstNI CCWGG 2 cut(s) 634, 863
BstSCI CCNGG 2 cut(s) 632, 861
BstSFI CTRYAG 2 cut(s) 117, 705
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 6 cut(s) 125, 241, 613, 697, 719, 799
Bsu15I ATCGAT 1 cut(s) 590
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 534
BsuTUI ATCGAT 1 cut(s) 590
BtsCI GGATG 3 cut(s) 455, 459, 808
BtuMI TCGCGA 1 cut(s) 436
CciI TCATGA 3 cut(s) 505, 559, 574
Cfr13I GGNCC 1 cut(s) 372
ClaI ATCGAT 1 cut(s) 590
Csp6I GTAC 3 cut(s) 474, 648, 702
CviAII CATG 4 cut(s) 344, 506, 560, 575
CviQI GTAC 3 cut(s) 474, 648, 702
DdeI CTNAG 3 cut(s) 237, 362, 368
DpnI GATC 6 cut(s) 216, 262, 510, 558, 564, 834
DpnII GATC 6 cut(s) 214, 260, 508, 556, 562, 832
EaeI YGGCCR 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 372
Eco81I CCTNAGG 1 cut(s) 237
EcoNI CCTNNNNNAGG 1 cut(s) 637
EcoRII CCWGG 2 cut(s) 632, 861
FaeI CATG 4 cut(s) 347, 509, 563, 578
FaqI GGGAC 1 cut(s) 650
FatI CATG 4 cut(s) 343, 505, 559, 574
FbaI TGATCA 2 cut(s) 214, 556
Fnu4HI GCNGC 6 cut(s) 114, 230, 627, 708, 711, 813
FokI GGATG 3 cut(s) 462, 466, 815
Fsp4HI GCNGC 6 cut(s) 114, 230, 627, 708, 711, 813
FspBI CTAG 3 cut(s) 645, 666, 827
GluI GCNGC 6 cut(s) 114, 230, 627, 708, 711, 813
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 1 cut(s) 534
HapII CCGG 1 cut(s) 399
Hin1II CATG 4 cut(s) 347, 509, 563, 578
HinfI GANTC 4 cut(s) 199, 275, 587, 662
HpaII CCGG 1 cut(s) 399
Hpy188I TCNGA 2 cut(s) 24, 274
Hpy188III TCNNGA 9 cut(s) 193, 435, 443, 506, 512, 560, 575, 785, 800
HpyAV CCTTC 4 cut(s) 440, 542, 610, 721
HpyCH4V TGCA 2 cut(s) 707, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 716
HpyF3I CTNAG 3 cut(s) 237, 362, 368
Hsp92II CATG 4 cut(s) 347, 509, 563, 578
Ksp22I TGATCA 2 cut(s) 214, 556
Kzo9I GATC 6 cut(s) 214, 260, 508, 556, 562, 832
Lsp1109I GCAGC 6 cut(s) 125, 241, 613, 697, 719, 799
MaeI CTAG 3 cut(s) 645, 666, 827
MaeIII GTNAC 1 cut(s) 490
MalI GATC 6 cut(s) 216, 262, 510, 558, 564, 834
MboI GATC 6 cut(s) 214, 260, 508, 556, 562, 832
MboII GAAGA 5 cut(s) 31, 193, 196, 208, 527
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 9 cut(s) 14, 25, 85, 93, 160, 289, 655, 845, 855
MluNI TGGCCA 1 cut(s) 534
MlyI GAGTC 1 cut(s) 269
Mox20I TGGCCA 1 cut(s) 534
MscI TGGCCA 1 cut(s) 534
MseI TTAA 2 cut(s) 89, 621
MslI CAYNNNNRTG 2 cut(s) 106, 510
Msp20I TGGCCA 1 cut(s) 534
MspA1I CMGCKG 2 cut(s) 209, 710
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 634, 863
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 2 cut(s) 634, 863
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 2 cut(s) 119, 716
NdeII GATC 6 cut(s) 214, 260, 508, 556, 562, 832
NlaIII CATG 4 cut(s) 347, 509, 563, 578
NruI TCGCGA 1 cut(s) 436
NspV TTCGAA 1 cut(s) 585
PagI TCATGA 3 cut(s) 505, 559, 574
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 3 cut(s) 199, 587, 662
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 6 cut(s) 115, 231, 628, 709, 712, 814
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 632, 861
PspGI CCWGG 2 cut(s) 632, 861
PspPI GGNCC 1 cut(s) 372
PstI CTGCAG 1 cut(s) 709
PvuII CAGCTG 2 cut(s) 209, 710
RruI TCGCGA 1 cut(s) 436
RsaI GTAC 3 cut(s) 475, 649, 703
RsaNI GTAC 3 cut(s) 474, 648, 702
RseI CAYNNNNRTG 2 cut(s) 106, 510
SaqAI TTAA 2 cut(s) 89, 621
SatI GCNGC 6 cut(s) 114, 230, 627, 708, 711, 813
Sau3AI GATC 6 cut(s) 214, 260, 508, 556, 562, 832
Sau96I GGNCC 1 cut(s) 372
ScaI AGTACT 3 cut(s) 475, 649, 703
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 634, 863
SfcI CTRYAG 2 cut(s) 117, 705
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 2 cut(s) 106, 510
SmlI CTYRAG 2 cut(s) 191, 785
SmoI CTYRAG 2 cut(s) 191, 785
Sse9I AATT 9 cut(s) 14, 25, 85, 93, 160, 289, 655, 845, 855
SspMI CTAG 3 cut(s) 645, 666, 827
StyD4I CCNGG 2 cut(s) 632, 861
TaqI TCGA 6 cut(s) 278, 350, 585, 590, 603, 835
TasI AATT 9 cut(s) 14, 25, 85, 93, 160, 289, 655, 845, 855
TatI WGTACW 3 cut(s) 473, 647, 701
TfiI GAWTC 3 cut(s) 199, 587, 662
Tru1I TTAA 2 cut(s) 89, 621
Tru9I TTAA 2 cut(s) 89, 621
TseI GCWGC 6 cut(s) 113, 229, 626, 707, 710, 812
TspDTI ATGAA 4 cut(s) 36, 561, 591, 819
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 372
XagI CCTNNNNNAGG 1 cut(s) 637
XspI CTAG 3 cut(s) 645, 666, 827
ZrmI AGTACT 3 cut(s) 475, 649, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.