RLG00000022592
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009968
Physical Location & Seq
Reverse (-)
4716567 .. 4717815
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022592

Sequence Viewer

Length: 879 bp
ATGGGAAGGCCTCCTTGCTGTGAGAAGGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAGGATATCATTCTTGTTTCTTACATCCAAGAACATGGTCCAGGCAATTGGAGAGCAGTGCCAACCAACACAGCTATAGCTTCTTACCTCCCACAAAGAACAGACAATGATATAAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTCAAGAAGATTCAGTCAGCTGTTGATCATCATCATCAGCAGCATCCTCAGGCTCACAATAATATATTGGGATCATCTATATCAGACTCGACCACAAGTAATTCTACTCATCATCAATATCCTCACAGGAATAATGTCAATGACATCACAAGCCCAACAACTCTCAGTCTCAGGTCCATAAACCAGTCCTCCTCCTCCTCCGGTGGTATATATGCCTCCAGCACCGAGAACATTTCGCGACTCCTTGAAGGATGGATGAGAACCTCCCCAAAGAGTACTAACGCTAACCTTGTAACCAAACCATATCATGATCGTGAAGAAAACCCAAAAGGTGGCCAAGACCAAGATGAAGGCTGTGATCATGATCTTTTATCTCATGAAGCATTCGAATCGATTTTGTCCTTCGACAACTTGAATAATGTTAATGCTGCTTCCTGGGACAGGTCTAGTACTACAAATTGTGATTCTAGTTCTATCAAGCAGGTGTCTCAAACCCAATGTAGTACTGCAGCTGCCATTGCAAATGAGAAGGATAAGCACATTATTAGAACCTGTGAAAGCACGAACACTCCTCCATTATCATTTCTTGAGAAATGGCTTCTGGATGAAAGTGCTGCTGGACAAGTACTAGAGGATCGAATGATGGAATTGTCTCCAATTTCGTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

293

Amino Acids

32.44

Weight (kDa)

6.04

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 66 6.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 73 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 679
Acc36I ACCTGC 1 cut(s) 679
AccB7I CCANNNNNTGG 1 cut(s) 539
AccII CGCG 1 cut(s) 445
AclWI GGATC 2 cut(s) 286, 849
AcoI YGGCCR 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 4 cut(s) 484, 658, 712, 834
AfiI CCNNNNNNNGG 2 cut(s) 539, 648
AgsI TTSAA 3 cut(s) 199, 455, 622
AjnI CCWGG 2 cut(s) 100, 641
AluBI AGCT 5 cut(s) 134, 140, 208, 227, 719
AluI AGCT 5 cut(s) 134, 140, 208, 227, 719
Alw26I GTCTC 3 cut(s) 380, 699, 864
AlwI GGATC 2 cut(s) 286, 849
AoxI GGCC 2 cut(s) 8, 541
ApeKI GCWGC 5 cut(s) 247, 635, 716, 719, 821
AspS9I GGNCC 3 cut(s) 44, 98, 381
AsuII TTCGAA 1 cut(s) 594
AvaII GGWCC 3 cut(s) 44, 98, 381
AxyI CCTNAGG 1 cut(s) 255
BalI TGGCCA 1 cut(s) 543
BbvI GCAGC 5 cut(s) 259, 622, 706, 728, 808
BccI CCATC 2 cut(s) 453, 844
BcgI CGANNNNNNTGC 2 cut(s) 579, 613
BciT130I CCWGG 2 cut(s) 102, 643
BclI TGATCA 2 cut(s) 232, 565
BcoDI GTCTC 3 cut(s) 380, 699, 864
BfaI CTAG 3 cut(s) 654, 675, 836
BfmI CTRYAG 2 cut(s) 135, 714
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 5 cut(s) 248, 636, 717, 720, 822
BlsI GCNGC 5 cut(s) 249, 637, 718, 721, 823
BmcAI AGTACT 4 cut(s) 484, 658, 712, 834
Bme1390I CCNGG 2 cut(s) 102, 643
Bme18I GGWCC 3 cut(s) 44, 98, 381
BmgT120I GGNCC 3 cut(s) 44, 98, 381
BmrFI CCNGG 2 cut(s) 102, 643
BmsI GCATC 2 cut(s) 42, 259
BpmI CTGGAG 1 cut(s) 409
Bpu14I TTCGAA 1 cut(s) 594
BpuEI CTTGAG 2 cut(s) 194, 815
Bsa29I ATCGAT 1 cut(s) 599
BsaBI GATNNNNATC 2 cut(s) 237, 570
BsaJI CCNNGG 2 cut(s) 47, 642
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 4 cut(s) 380, 410, 760, 790
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 648
Bse1I ACTGG 2 cut(s) 188, 391
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 723
Bse8I GATNNNNATC 2 cut(s) 237, 570
BseBI CCWGG 2 cut(s) 102, 643
BseCI ATCGAT 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 47, 642
BseGI GGATG 5 cut(s) 84, 250, 464, 468, 817
BseJI GATNNNNATC 2 cut(s) 237, 570
BseLI CCNNNNNNNGG 2 cut(s) 539, 648
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 3 cut(s) 269, 385, 391
BseNI ACTGG 2 cut(s) 188, 391
BseRI GAGGAG 4 cut(s) 388, 391, 394, 768
BseXI GCAGC 5 cut(s) 259, 622, 706, 728, 808
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 10, 543
BshVI ATCGAT 1 cut(s) 599
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 2 cut(s) 539, 648
BsmAI GTCTC 3 cut(s) 380, 699, 864
BsmFI GGGAC 1 cut(s) 659
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 10, 543
Bsp119I TTCGAA 1 cut(s) 594
Bsp143I GATC 6 cut(s) 232, 278, 517, 565, 571, 841
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 445
BspANI GGCC 2 cut(s) 10, 543
BspCNI CTCAG 3 cut(s) 268, 384, 390
BspDI ATCGAT 1 cut(s) 599
BspFNI CGCG 1 cut(s) 445
BspHI TCATGA 3 cut(s) 514, 568, 583
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 2 cut(s) 286, 849
BspT104I TTCGAA 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 723
BsrI ACTGG 2 cut(s) 188, 391
BssECI CCNNGG 2 cut(s) 47, 642
BssMI GATC 6 cut(s) 232, 278, 517, 565, 571, 841
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 102, 643
Bst6I CTCTTC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 255, 371, 377
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 646
BstF5I GGATG 5 cut(s) 84, 250, 464, 468, 817
BstFNI CGCG 1 cut(s) 445
BstKTI GATC 6 cut(s) 235, 281, 520, 568, 574, 844
BstMAI GTCTC 3 cut(s) 380, 699, 864
BstMBI GATC 6 cut(s) 232, 278, 517, 565, 571, 841
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 2 cut(s) 102, 643
BstSCI CCNGG 2 cut(s) 100, 641
BstSFI CTRYAG 2 cut(s) 135, 714
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 5 cut(s) 259, 622, 706, 728, 808
BstXI CCANNNNNNTGG 2 cut(s) 95, 108
Bsu15I ATCGAT 1 cut(s) 599
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 10, 543
BsuTUI ATCGAT 1 cut(s) 599
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 84, 250, 464, 468, 817
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
BtuMI TCGCGA 1 cut(s) 445
BveI ACCTGC 1 cut(s) 679
CciI TCATGA 3 cut(s) 514, 568, 583
Cfr13I GGNCC 3 cut(s) 44, 98, 381
ClaI ATCGAT 1 cut(s) 599
Csp6I GTAC 4 cut(s) 483, 657, 711, 833
CviAII CATG 5 cut(s) 48, 95, 515, 569, 584
CviQI GTAC 4 cut(s) 483, 657, 711, 833
DdeI CTNAG 3 cut(s) 255, 371, 377
DpnI GATC 6 cut(s) 234, 280, 519, 567, 573, 843
DpnII GATC 6 cut(s) 232, 278, 517, 565, 571, 841
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 10
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 44, 98, 381
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 646
EcoRII CCWGG 2 cut(s) 100, 641
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 51, 98, 518, 572, 587
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 659
FatI CATG 5 cut(s) 47, 94, 514, 568, 583
FbaI TGATCA 2 cut(s) 232, 565
Fnu4HI GCNGC 5 cut(s) 248, 636, 717, 720, 822
FokI GGATG 5 cut(s) 71, 237, 471, 475, 824
Fsp4HI GCNGC 5 cut(s) 248, 636, 717, 720, 822
FspBI CTAG 3 cut(s) 654, 675, 836
GluI GCNGC 5 cut(s) 248, 636, 717, 720, 822
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 2 cut(s) 10, 543
HapII CCGG 1 cut(s) 408
Hin1II CATG 5 cut(s) 51, 98, 518, 572, 587
HinfI GANTC 5 cut(s) 217, 293, 447, 596, 671
HpaII CCGG 1 cut(s) 408
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 9 cut(s) 37, 211, 444, 515, 521, 569, 584, 794, 809
HpyAV CCTTC 5 cut(s) 19, 449, 551, 619, 730
HpyCH4V TGCA 2 cut(s) 716, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 3 cut(s) 255, 371, 377
Hsp92II CATG 5 cut(s) 51, 98, 518, 572, 587
Ksp22I TGATCA 2 cut(s) 232, 565
Kzo9I GATC 6 cut(s) 232, 278, 517, 565, 571, 841
Lsp1109I GCAGC 5 cut(s) 259, 622, 706, 728, 808
LweI GCATC 2 cut(s) 42, 259
MaeI CTAG 3 cut(s) 654, 675, 836
MaeIII GTNAC 1 cut(s) 499
MalI GATC 6 cut(s) 234, 280, 519, 567, 573, 843
MboI GATC 6 cut(s) 232, 278, 517, 565, 571, 841
MboII GAAGA 5 cut(s) 71, 211, 214, 226, 536
MfeI CAATTG 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 6 cut(s) 106, 178, 307, 664, 854, 864
MluNI TGGCCA 1 cut(s) 543
MlyI GAGTC 2 cut(s) 287, 441
Mox20I TGGCCA 1 cut(s) 543
MscI TGGCCA 1 cut(s) 543
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 543
MspA1I CMGCKG 2 cut(s) 227, 719
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 2 cut(s) 102, 643
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 2 cut(s) 102, 643
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 725
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 232, 278, 517, 565, 571, 841
NlaIII CATG 5 cut(s) 51, 98, 518, 572, 587
NruI TCGCGA 1 cut(s) 445
NspV TTCGAA 1 cut(s) 594
PagI TCATGA 3 cut(s) 514, 568, 583
PaqCI CACCTGC 1 cut(s) 679
PceI AGGCCT 1 cut(s) 10
PctI GAATGC 1 cut(s) 590
PfeI GAWTC 3 cut(s) 217, 596, 671
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 5 cut(s) 249, 637, 718, 721, 823
PleI GAGTC 2 cut(s) 287, 441
PpsI GAGTC 2 cut(s) 287, 441
Psp6I CCWGG 2 cut(s) 100, 641
PspGI CCWGG 2 cut(s) 100, 641
PspPI GGNCC 3 cut(s) 44, 98, 381
PstI CTGCAG 1 cut(s) 718
PvuII CAGCTG 2 cut(s) 227, 719
RruI TCGCGA 1 cut(s) 445
RsaI GTAC 4 cut(s) 484, 658, 712, 834
RsaNI GTAC 4 cut(s) 483, 657, 711, 833
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 5 cut(s) 248, 636, 717, 720, 822
Sau3AI GATC 6 cut(s) 232, 278, 517, 565, 571, 841
Sau96I GGNCC 3 cut(s) 44, 98, 381
ScaI AGTACT 4 cut(s) 484, 658, 712, 834
SchI GAGTC 2 cut(s) 287, 441
ScrFI CCNGG 2 cut(s) 102, 643
SfaNI GCATC 2 cut(s) 42, 259
SfcI CTRYAG 2 cut(s) 135, 714
SfuI TTCGAA 1 cut(s) 594
SinI GGWCC 3 cut(s) 44, 98, 381
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 209, 794
SmoI CTYRAG 2 cut(s) 209, 794
Sse9I AATT 6 cut(s) 106, 178, 307, 664, 854, 864
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 3 cut(s) 654, 675, 836
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 100, 641
StyI CCWWGG 1 cut(s) 47
TaqI TCGA 5 cut(s) 296, 594, 599, 612, 844
TasI AATT 6 cut(s) 106, 178, 307, 664, 854, 864
TatI WGTACW 4 cut(s) 482, 656, 710, 832
TfiI GAWTC 3 cut(s) 217, 596, 671
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 123
TseI GCWGC 5 cut(s) 247, 635, 716, 719, 821
TspDTI ATGAA 3 cut(s) 570, 600, 828
TspRI CASTG 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 539
VpaK11BI GGWCC 3 cut(s) 44, 98, 381
XagI CCTNNNNNAGG 1 cut(s) 646
XspI CTAG 3 cut(s) 654, 675, 836
ZrmI AGTACT 4 cut(s) 484, 658, 712, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.