Rroxscaffold_6G00390080
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009968
Physical Location & Seq
Reverse (-)
4502369 .. 4503728
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390080.1

Sequence Viewer

Length: 888 bp
ATGGGAAGGCCTCCTTGCTGTGAGAAGGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAGGATATCATTCTTGTTTCTTACATCCAAGAACATGGTCCAGGCAATTGGAGAGCAGTGCCAACCAACACTGCTATAGCTTCGTACCTCCCACAAAGAACAGACAATGATATCAAGAATTACTGGAACACCCACTTGAAGAAGAAGCTCAAGAAGATTCAGTCAGCTGTTGATCATCATCATCAGCAGCATCCTCAGGCTCAAAATAATATATTGGGATCATCTATATCAGACTCGACCACAAGTAATTCTACTCATCATCAATATCCTCACAGGAATAATGTCAATGACATCACAAGCCATGCCTCGACAACAACTCTCAGTCTCAGGTCCATAAACCAGTCCTCCCCCTCCTCCGGTGGTATATATGCCTCCAGCACCGAGAACATTTCGCGACTCCTTGAAGGATGGATGAGAACCTCCCCAAAGAGTACTAACGCTAACCTTGTAACCAAACCATCTCATGATCGTGAAGAAAACCCAAAAGGTGGCCAAGACCAAGATGAAGGCTGTGATCATGATCTTTTATCTCATGAAGCATTCGAATCGATTTTGTCCTTCGACAACTTGAATAATGTTAATGCTGCTTCCTGGGACAGGTCTAGTACTACTAATTGTGATTCTAGTTCTATCAAGCAGGTGTCTCAAACCCAATGTAGTACTGCAGCTGCCATTGCAAATGAGAAGGATAAGCACATTATTAGAGCCTGTGAAAGCACGAACACTCCTCCATTATCATTTCTTGAGAAATGGCTTCTGGATGAAAGTGCTGCGGGACAAGTACTAGAGGATCGAATGATGGAATTGTCTCCAATTTCCTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

295

Amino Acids

32.64

Weight (kDa)

6.04

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 66 6.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 73 1.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 688
Acc36I ACCTGC 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 548
AccII CGCG 1 cut(s) 454
AciI CCGC 1 cut(s) 833
AclWI GGATC 2 cut(s) 286, 858
AcoI YGGCCR 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 5 cut(s) 146, 493, 667, 721, 843
AfiI CCNNNNNNNGG 3 cut(s) 416, 548, 657
AgsI TTSAA 3 cut(s) 199, 464, 631
AjnI CCWGG 2 cut(s) 100, 650
AluBI AGCT 4 cut(s) 140, 208, 227, 728
AluI AGCT 4 cut(s) 140, 208, 227, 728
Alw26I GTCTC 3 cut(s) 389, 708, 873
AlwI GGATC 2 cut(s) 286, 858
AoxI GGCC 2 cut(s) 8, 550
ApeKI GCWGC 5 cut(s) 247, 644, 725, 728, 830
AspS9I GGNCC 3 cut(s) 44, 98, 390
AsuII TTCGAA 1 cut(s) 603
AvaII GGWCC 3 cut(s) 44, 98, 390
AxyI CCTNAGG 1 cut(s) 255
BalI TGGCCA 1 cut(s) 552
BbvI GCAGC 5 cut(s) 259, 631, 715, 737, 817
BccI CCATC 3 cut(s) 462, 526, 853
BcgI CGANNNNNNTGC 2 cut(s) 588, 622
BciT130I CCWGG 2 cut(s) 102, 652
BclI TGATCA 2 cut(s) 232, 574
BcoDI GTCTC 3 cut(s) 389, 708, 873
BfaI CTAG 3 cut(s) 663, 684, 845
BfmI CTRYAG 2 cut(s) 135, 723
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 5 cut(s) 248, 645, 726, 729, 831
BlsI GCNGC 5 cut(s) 249, 646, 727, 730, 832
BmcAI AGTACT 4 cut(s) 493, 667, 721, 843
Bme1390I CCNGG 2 cut(s) 102, 652
Bme18I GGWCC 3 cut(s) 44, 98, 390
BmgT120I GGNCC 3 cut(s) 44, 98, 390
BmrFI CCNGG 2 cut(s) 102, 652
BmsI GCATC 2 cut(s) 42, 259
BpmI CTGGAG 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 603
BpuEI CTTGAG 2 cut(s) 194, 824
Bsa29I ATCGAT 1 cut(s) 608
BsaBI GATNNNNATC 2 cut(s) 237, 579
BsaJI CCNNGG 3 cut(s) 47, 651, 879
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 4 cut(s) 389, 419, 769, 799
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 548, 657
Bse1I ACTGG 2 cut(s) 188, 400
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 2 cut(s) 237, 579
BseBI CCWGG 2 cut(s) 102, 652
BseCI ATCGAT 1 cut(s) 608
BseDI CCNNGG 3 cut(s) 47, 651, 879
BseGI GGATG 5 cut(s) 84, 250, 473, 477, 826
BseJI GATNNNNATC 2 cut(s) 237, 579
BseLI CCNNNNNNNGG 3 cut(s) 416, 548, 657
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 3 cut(s) 269, 394, 400
BseNI ACTGG 2 cut(s) 188, 400
BseRI GAGGAG 2 cut(s) 403, 777
BseXI GCAGC 5 cut(s) 259, 631, 715, 737, 817
Bsh1236I CGCG 1 cut(s) 454
BshFI GGCC 2 cut(s) 10, 552
BshVI ATCGAT 1 cut(s) 608
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 2 cut(s) 668, 849
BslI CCNNNNNNNGG 3 cut(s) 416, 548, 657
BsmAI GTCTC 3 cut(s) 389, 708, 873
BsmFI GGGAC 2 cut(s) 668, 849
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 2 cut(s) 10, 552
Bsp119I TTCGAA 1 cut(s) 603
Bsp143I GATC 6 cut(s) 232, 278, 526, 574, 580, 850
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 454
BspACI CCGC 1 cut(s) 833
BspANI GGCC 2 cut(s) 10, 552
BspCNI CTCAG 3 cut(s) 268, 393, 399
BspDI ATCGAT 1 cut(s) 608
BspFNI CGCG 1 cut(s) 454
BspHI TCATGA 3 cut(s) 523, 577, 592
BspMAI CTGCAG 1 cut(s) 727
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 2 cut(s) 286, 858
BspT104I TTCGAA 1 cut(s) 603
BsrDI GCAATG 1 cut(s) 732
BsrI ACTGG 2 cut(s) 188, 400
BssECI CCNNGG 3 cut(s) 47, 651, 879
BssMI GATC 6 cut(s) 232, 278, 526, 574, 580, 850
BssT1I CCWWGG 2 cut(s) 47, 879
Bst2UI CCWGG 2 cut(s) 102, 652
Bst6I CTCTTC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 603
BstDEI CTNAG 3 cut(s) 255, 380, 386
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 655
BstF5I GGATG 5 cut(s) 84, 250, 473, 477, 826
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 6 cut(s) 235, 281, 529, 577, 583, 853
BstMAI GTCTC 3 cut(s) 389, 708, 873
BstMBI GATC 6 cut(s) 232, 278, 526, 574, 580, 850
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstNI CCWGG 2 cut(s) 102, 652
BstSCI CCNGG 2 cut(s) 100, 650
BstSFI CTRYAG 2 cut(s) 135, 723
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 5 cut(s) 259, 631, 715, 737, 817
BstXI CCANNNNNNTGG 2 cut(s) 95, 108
Bsu15I ATCGAT 1 cut(s) 608
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 10, 552
BsuTUI ATCGAT 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 84, 250, 473, 477, 826
BtsI GCAGTG 2 cut(s) 123, 129
BtsIMutI CAGTG 2 cut(s) 123, 129
BtuMI TCGCGA 1 cut(s) 454
BveI ACCTGC 1 cut(s) 688
CciI TCATGA 3 cut(s) 523, 577, 592
Cfr13I GGNCC 3 cut(s) 44, 98, 390
ClaI ATCGAT 1 cut(s) 608
Csp6I GTAC 5 cut(s) 145, 492, 666, 720, 842
CviAII CATG 6 cut(s) 48, 95, 362, 524, 578, 593
CviQI GTAC 5 cut(s) 145, 492, 666, 720, 842
DdeI CTNAG 3 cut(s) 255, 380, 386
DpnI GATC 6 cut(s) 234, 280, 528, 576, 582, 852
DpnII GATC 6 cut(s) 232, 278, 526, 574, 580, 850
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 47, 879
Eco147I AGGCCT 1 cut(s) 10
Eco32I GATATC 2 cut(s) 67, 172
Eco47I GGWCC 3 cut(s) 44, 98, 390
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 655
EcoRII CCWGG 2 cut(s) 100, 650
EcoRV GATATC 2 cut(s) 67, 172
EcoT14I CCWWGG 2 cut(s) 47, 879
ErhI CCWWGG 2 cut(s) 47, 879
FaeI CATG 6 cut(s) 51, 98, 365, 527, 581, 596
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 2 cut(s) 668, 849
FatI CATG 6 cut(s) 47, 94, 361, 523, 577, 592
FauI CCCGC 1 cut(s) 826
FbaI TGATCA 2 cut(s) 232, 574
Fnu4HI GCNGC 5 cut(s) 248, 645, 726, 729, 831
FokI GGATG 5 cut(s) 71, 237, 480, 484, 833
Fsp4HI GCNGC 5 cut(s) 248, 645, 726, 729, 831
FspBI CTAG 3 cut(s) 663, 684, 845
GluI GCNGC 5 cut(s) 248, 645, 726, 729, 831
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 2 cut(s) 10, 552
HapII CCGG 1 cut(s) 417
Hin1II CATG 6 cut(s) 51, 98, 365, 527, 581, 596
HinfI GANTC 5 cut(s) 217, 293, 456, 605, 680
HpaII CCGG 1 cut(s) 417
Hpy188I TCNGA 1 cut(s) 292
HpyAV CCTTC 5 cut(s) 19, 458, 560, 628, 739
HpyCH4V TGCA 2 cut(s) 725, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 3 cut(s) 255, 380, 386
Hsp92II CATG 6 cut(s) 51, 98, 365, 527, 581, 596
Ksp22I TGATCA 2 cut(s) 232, 574
Kzo9I GATC 6 cut(s) 232, 278, 526, 574, 580, 850
Lsp1109I GCAGC 5 cut(s) 259, 631, 715, 737, 817
LweI GCATC 2 cut(s) 42, 259
MaeI CTAG 3 cut(s) 663, 684, 845
MaeIII GTNAC 1 cut(s) 508
MalI GATC 6 cut(s) 234, 280, 528, 576, 582, 852
MboI GATC 6 cut(s) 232, 278, 526, 574, 580, 850
MboII GAAGA 5 cut(s) 71, 211, 214, 226, 545
MfeI CAATTG 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 6 cut(s) 106, 178, 307, 673, 863, 873
MluNI TGGCCA 1 cut(s) 552
MlyI GAGTC 2 cut(s) 287, 450
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 1 cut(s) 528
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 227, 728
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 2 cut(s) 102, 652
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 2 cut(s) 102, 652
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 1 cut(s) 734
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 232, 278, 526, 574, 580, 850
NlaIII CATG 6 cut(s) 51, 98, 365, 527, 581, 596
NruI TCGCGA 1 cut(s) 454
NspV TTCGAA 1 cut(s) 603
PagI TCATGA 3 cut(s) 523, 577, 592
PaqCI CACCTGC 1 cut(s) 688
PceI AGGCCT 1 cut(s) 10
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 3 cut(s) 217, 605, 680
PflMI CCANNNNNTGG 1 cut(s) 548
PkrI GCNGC 5 cut(s) 249, 646, 727, 730, 832
PleI GAGTC 2 cut(s) 287, 450
PpsI GAGTC 2 cut(s) 287, 450
Psp6I CCWGG 2 cut(s) 100, 650
PspGI CCWGG 2 cut(s) 100, 650
PspPI GGNCC 3 cut(s) 44, 98, 390
PstI CTGCAG 1 cut(s) 727
PvuII CAGCTG 2 cut(s) 227, 728
RruI TCGCGA 1 cut(s) 454
RsaI GTAC 5 cut(s) 146, 493, 667, 721, 843
RsaNI GTAC 5 cut(s) 145, 492, 666, 720, 842
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 5 cut(s) 248, 645, 726, 729, 831
Sau3AI GATC 6 cut(s) 232, 278, 526, 574, 580, 850
Sau96I GGNCC 3 cut(s) 44, 98, 390
ScaI AGTACT 4 cut(s) 493, 667, 721, 843
SchI GAGTC 2 cut(s) 287, 450
ScrFI CCNGG 2 cut(s) 102, 652
SfaNI GCATC 2 cut(s) 42, 259
SfcI CTRYAG 2 cut(s) 135, 723
SfuI TTCGAA 1 cut(s) 603
SinI GGWCC 3 cut(s) 44, 98, 390
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 2 cut(s) 209, 803
SmoI CTYRAG 2 cut(s) 209, 803
Sse9I AATT 6 cut(s) 106, 178, 307, 673, 863, 873
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 1 cut(s) 833
SspMI CTAG 3 cut(s) 663, 684, 845
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 100, 650
StyI CCWWGG 2 cut(s) 47, 879
TaqI TCGA 6 cut(s) 296, 368, 603, 608, 621, 853
TasI AATT 6 cut(s) 106, 178, 307, 673, 863, 873
TatI WGTACW 4 cut(s) 491, 665, 719, 841
TfiI GAWTC 3 cut(s) 217, 605, 680
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 2 cut(s) 123, 136
TseI GCWGC 5 cut(s) 247, 644, 725, 728, 830
TspDTI ATGAA 3 cut(s) 579, 609, 837
TspRI CASTG 2 cut(s) 123, 136
Van91I CCANNNNNTGG 1 cut(s) 548
VpaK11BI GGWCC 3 cut(s) 44, 98, 390
XagI CCTNNNNNAGG 1 cut(s) 655
XspI CTAG 3 cut(s) 663, 684, 845
ZrmI AGTACT 4 cut(s) 493, 667, 721, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.