Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

2946030 .. 2949159

Gene Structure 3130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTTAAGAAGTTTTGTTTGGAGGAGATTTCATCACAAAACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGTACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTGCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTGACGGGCCATACATGCCAACACTGCGGCTTCTTCATCAATACCCAAATATAATGAAGAGGTTTCAAGTTGATAGAGGTGCCATAAAGTTTGTTCTGTCTGGTGCAAACATAATGTGTCCTGGTCTTACATCCCCGGGAGGCGTTCTGGATCAAGAAGTCGAGGCTGAAAGGCCAGTGGCCATATATGCAGAAGGAAAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGACGGTCTCTGGAAGATGGAACGACTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

181

Amino Acids

20.46

Weight (kDa)

8.87

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA	PF17832	8 - 88	4.8e-27	Pre-PUA-like domain
PUA	PF01472	92 - 170	7.3e-16	PUA domain
PUA_elF2D	PF26292	97 - 172	8.7e-14	elF2D, PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	2 cut(s)	73, 244
AclWI	GGATC	4 cut(s)	64, 77, 129, 375
AcoI	YGGCCR	1 cut(s)	396
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	3 cut(s)	62, 107, 284
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	4 cut(s)	64, 77, 129, 375
Ama87I	CYCGRG	2 cut(s)	97, 352
AoxI	GGCC	3 cut(s)	224, 389, 396
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	4 cut(s)	98, 99, 353, 354
AsuHPI	GGTGA	1 cut(s)	433
AvaI	CYCGRG	2 cut(s)	97, 352
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	296
BccI	CCATC	3 cut(s)	109, 177, 523
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	2 cut(s)	92, 224
BcnI	CCSGG	4 cut(s)	98, 99, 353, 354
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	179, 539
BfuI	GTATCC	2 cut(s)	92, 224
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	5 cut(s)	98, 99, 339, 353, 354
BmeT110I	CYCGRG	2 cut(s)	97, 352
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	71, 298
BmrFI	CCNGG	5 cut(s)	98, 99, 339, 353, 354
BmsI	GCATC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	427
BpuMI	CCSGG	4 cut(s)	98, 99, 353, 354
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	3 cut(s)	97, 351, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	97, 351, 352
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	226, 391, 398
BshNI	GGYRCC	1 cut(s)	296
BsiHKCI	CYCGRG	2 cut(s)	97, 352
BsiSI	CCGG	2 cut(s)	98, 353
BslFI	GGGAC	2 cut(s)	114, 182
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	114, 182
BsnI	GGCC	3 cut(s)	226, 391, 398
Bso31I	GGTCTC	1 cut(s)	524
BsoBI	CYCGRG	2 cut(s)	97, 352
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	69, 121, 367
BspACI	CCGC	2 cut(s)	73, 244
BspANI	GGCC	3 cut(s)	226, 391, 398
BspLI	GGNNCC	2 cut(s)	71, 298
BspPI	GGATC	4 cut(s)	64, 77, 129, 375
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	97, 351, 352
BssMI	GATC	3 cut(s)	69, 121, 367
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	209, 269
BstDEI	CTNAG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	3 cut(s)	72, 124, 370
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	3 cut(s)	69, 121, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 241, 404
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	3 cut(s)	235, 425, 502
BstSCI	CCNGG	5 cut(s)	96, 97, 337, 351, 352
BstSLI	GKGCMC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	69, 121
BstYI	RGATCY	2 cut(s)	69, 121
BsuI	GTATCC	2 cut(s)	92, 224
BsuRI	GGCC	3 cut(s)	226, 391, 398
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	3 cut(s)	117, 239, 399
Cfr13I	GGNCC	1 cut(s)	224
Cfr9I	CCCGGG	2 cut(s)	97, 352
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	232, 422, 499
CviJI	RGCY	6 cut(s)	226, 247, 383, 391, 398, 438
CviKI_1	RGCY	6 cut(s)	226, 247, 383, 391, 398, 438
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	3 cut(s)	71, 123, 369
DpnII	GATC	3 cut(s)	69, 121, 367
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	209, 269
EarI	CTCTTC	2 cut(s)	209, 269
EciI	GGCGGA	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	524
Eco88I	CYCGRG	2 cut(s)	97, 352
EcoRII	CCWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	504
FaeI	CATG	3 cut(s)	235, 425, 502
FaqI	GGGAC	2 cut(s)	114, 182
FatI	CATG	3 cut(s)	231, 421, 498
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	179, 539
GluI	GCNGC	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	226, 391, 398
HapII	CCGG	2 cut(s)	98, 353
Hin1II	CATG	3 cut(s)	235, 425, 502
HincII	GTYRAC	2 cut(s)	190, 493
HindII	GTYRAC	2 cut(s)	190, 493
HinfI	GANTC	2 cut(s)	107, 139
HpaII	CCGG	2 cut(s)	98, 353
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	190, 493
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	3 cut(s)	365, 371, 523
Hpy8I	GTNNAC	2 cut(s)	190, 493
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	2 cut(s)	43, 404
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	323, 407, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 241, 404
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	235, 425, 502
Kzo9I	GATC	3 cut(s)	69, 121, 367
LpnPI	CCDG	9 cut(s)	89, 111, 303, 324, 350, 351, 366, 405, 508
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	179, 539
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	71, 123, 369
MboI	GATC	3 cut(s)	69, 121, 367
MboII	GAAGA	5 cut(s)	196, 199, 242, 286, 538
MflI	RGATCY	2 cut(s)	69, 121
MhlI	GDGCHC	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
MnlI	CCTC	9 cut(s)	16, 112, 153, 212, 270, 287, 350, 373, 518
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	2 cut(s)	6, 474
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	2 cut(s)	98, 353
MspR9I	CCNGG	5 cut(s)	98, 99, 339, 353, 354
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	232, 241, 404
NciI	CCSGG	4 cut(s)	98, 99, 353, 354
NdeII	GATC	3 cut(s)	69, 121, 367
NlaIII	CATG	3 cut(s)	235, 425, 502
NlaIV	GGNNCC	2 cut(s)	71, 298
NmuCI	GTSAC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	3 cut(s)	235, 425, 502
PfeI	GAWTC	2 cut(s)	107, 139
PkrI	GCNGC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	71, 298
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	2 cut(s)	69, 121
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	6, 474
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	3 cut(s)	69, 121, 367
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	5 cut(s)	98, 99, 339, 353, 354
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	4 cut(s)	67, 281, 298, 510
SfaNI	GCATC	1 cut(s)	62
SmaI	CCCGGG	2 cut(s)	99, 354
SmiMI	CAYNNNNRTG	1 cut(s)	446
SsiI	CCGC	2 cut(s)	73, 244
SspMI	CTAG	2 cut(s)	179, 539
StyD4I	CCNGG	5 cut(s)	96, 97, 337, 351, 352
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	378
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	107, 139
Tru1I	TTAA	2 cut(s)	6, 474
Tru9I	TTAA	2 cut(s)	6, 474
TscAI	CASTG	3 cut(s)	117, 246, 399
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	21, 242, 287
TspGWI	ACGGA	1 cut(s)	206
TspMI	CCCGGG	2 cut(s)	97, 352
TspRI	CASTG	3 cut(s)	117, 246, 399
XceI	RCATGY	3 cut(s)	235, 425, 502
XmaI	CCCGGG	2 cut(s)	97, 352
XspI	CTAG	2 cut(s)	179, 539
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.