Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

11959841 .. 11962298

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1083700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTATGTGTTATGTTGTAGGTTTTCCACTGAAGAGGTGTCTGCACAAAACCAAGTGAAGGCATCAGTCCAGCGCAAAATTCGGCAAAGTATTGCAGATGAGTACCCTGGGCTCAAACAAGTGTTGGAAGATTTGATTCCTAAGAAGTCTCCTCTAATTGTGGCTAAATGTCAGAACCATCTCAATTTGGTTGTGGTAAACAACGTGCCACTATTTTTCAACATTCGTGATGGACCATATATGCCTACCCTAAGACTTCTCATCAGTCCATGGATGTTGGGTTTGGGTTTACGGTGCAGGCAGGTGGAACCATCATACATGTACTCTAGAAAGGATTCCGTGTTGCGTTTTACAGATCCAGATATAATGAAAAAGTTGCAAGTAGACAGGGGTGCCATTAGGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCAGGTCTTACTTCTCCTGGAGGTGCTTTGGATGATGAAGTGGGAGCAGAAACTCCTGTGGCAATCATGGCAGAAGGGAAGCAACATGCTCTCGCAATTGGTTTCACAAAAATGTCAGCAAAAGAAATAAGAGATATCAACAAGGGAATCGGAGTTGACAACATGCATTATCTTAATGACGGTCTTTGGAAGATGGAACATCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

214

Amino Acids

23.85

Weight (kDa)

8.56

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA	PF17832	10 - 88	3.5e-26	Pre-PUA-like domain
PUA	PF01472	124 - 202	6.9e-17	PUA domain
PUA_elF2D	PF26292	132 - 204	3.4e-12	elF2D, PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	292
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	384
AclWI	GGATC	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	104, 323
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	3 cut(s)	106, 433, 448
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	114
BccI	CCATC	4 cut(s)	186, 224, 319, 619
BciT130I	CCWGG	3 cut(s)	108, 435, 450
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	108, 435, 450
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	309, 394
BmrFI	CCNGG	3 cut(s)	108, 435, 450
BmsI	GCATC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	106, 107, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseBI	CCWGG	3 cut(s)	108, 435, 450
BseDI	CCNNGG	3 cut(s)	106, 107, 269
BseGI	GGATG	2 cut(s)	279, 469
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	141
BsgI	GTGCAG	2 cut(s)	27, 316
BshNI	GGYRCC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	309, 394
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	106, 107, 269
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	3 cut(s)	108, 435, 450
Bst4CI	ACNGT	2 cut(s)	294, 614
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	141, 251
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	279, 469
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	3 cut(s)	108, 435, 450
BstNSI	RCATGY	3 cut(s)	322, 521, 598
BstSCI	CCNGG	3 cut(s)	106, 433, 448
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	279, 469
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	103, 322
CviAII	CATG	5 cut(s)	270, 319, 499, 518, 595
CviJI	RGCY	2 cut(s)	112, 164
CviKI_1	RGCY	2 cut(s)	112, 164
CviQI	GTAC	2 cut(s)	103, 322
DdeI	CTNAG	2 cut(s)	141, 251
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	106, 433, 448
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	600
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	5 cut(s)	273, 322, 502, 521, 598
FatI	CATG	5 cut(s)	269, 318, 498, 517, 594
FblI	GTMKAC	1 cut(s)	384
FokI	GGATG	2 cut(s)	286, 476
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	471
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	273, 322, 502, 521, 598
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	3 cut(s)	136, 335, 579
Hpy166II	GTNNAC	4 cut(s)	199, 290, 385, 589
Hpy188I	TCNGA	2 cut(s)	174, 584
Hpy188III	TCNNGA	4 cut(s)	227, 327, 359, 635
Hpy8I	GTNNAC	4 cut(s)	199, 290, 385, 589
HpyAV	CCTTC	2 cut(s)	52, 500
HpyCH4III	ACNGT	2 cut(s)	294, 614
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	6 cut(s)	44, 95, 297, 379, 419, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	141, 251
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	5 cut(s)	273, 322, 502, 521, 598
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	476
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	3 cut(s)	44, 140, 634
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	4 cut(s)	78, 156, 184, 528
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	28, 162, 446
Mph1103I	ATGCAT	1 cut(s)	600
MroXI	GAANNNNTTC	1 cut(s)	334
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	542
MspR9I	CCNGG	3 cut(s)	108, 435, 450
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	3 cut(s)	108, 435, 450
MwoI	GCNNNNNNNGC	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	273, 322, 502, 521, 598
NlaIV	GGNNCC	2 cut(s)	309, 394
NsiI	ATGCAT	1 cut(s)	600
NspI	RCATGY	3 cut(s)	322, 521, 598
PaqCI	CACCTGC	1 cut(s)	292
PasI	CCCWGGG	1 cut(s)	107
PciI	ACATGT	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	136, 335, 579
PfoI	TCCNGGA	1 cut(s)	448
PscI	ACATGT	1 cut(s)	318
Psp6I	CCWGG	3 cut(s)	106, 433, 448
PspGI	CCWGG	3 cut(s)	106, 433, 448
PspN4I	GGNNCC	2 cut(s)	309, 394
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	2 cut(s)	104, 323
RsaNI	GTAC	2 cut(s)	103, 322
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	606
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	108, 435, 450
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	23, 39, 207, 306, 404, 439, 457
SfaNI	GCATC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	4 cut(s)	78, 156, 184, 528
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	106, 433, 448
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	294, 614
TaiI	ACGT	1 cut(s)	207
TasI	AATT	4 cut(s)	78, 156, 184, 528
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	136, 335, 579
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	383, 483
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	78
XbaI	TCTAGA	1 cut(s)	326
XceI	RCATGY	3 cut(s)	322, 521, 598
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.