Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

35589583 .. 35592456

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCATGTTCTCTCTCTGGCAGTCTAGTTCCTATCGAATCTATGCCTTATCTTCTCCAAGGCTCCACCAAGGTGCGAGATATAACTTATATATGGCAGACAGATGAGCTTAGACGCCATAAACCCACACCAGTTGATGAAGCTAGGCCAATGGATTTTGAGTTCCCAATGGAGTTTCTTGAGGCTGGGAATGTATACAAGTATGCAAAGAACTATGTTTCTGGGCGATCCAATTTTATTTGTTCCACAGCAATAATTTTAGTTGATATCTCATATTATGGCTATGTAACAGTCTTGGCTTGTCTAAATTTTGGAGAAGAGGAGAATCAGGAGATCATTGGTATGCCTGGAGTGACTGCTTATGCTGGTTTTTATGAGATCTGCTCTCCTAAGAAAGGAGAGACAGTCTACATTTCAGCCGCATCTGGAGCAGTAGCAGTGAGGCAGCGGCGGATTCTGAGAATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

157

Amino Acids

17.53

Weight (kDa)

5.46

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	195, 408
AciI	CCGC	3 cut(s)	420, 448, 451
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	346
AleI	CACNNNNGTG	1 cut(s)	71
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	2 cut(s)	109, 143
AluI	AGCT	2 cut(s)	109, 143
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	26, 144
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	3 cut(s)	420, 446, 449
BlsI	GCNGC	3 cut(s)	421, 447, 450
Bme1390I	CCNGG	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	2 cut(s)	369, 447
BpuEI	CTTGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	58, 69
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	58, 69
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	227, 333, 378
BspACI	CCGC	3 cut(s)	420, 448, 451
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	58, 69
BssMI	GATC	3 cut(s)	227, 333, 378
BssNAI	GTATAC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	58, 69
Bst1107I	GTATAC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	292, 406
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	115
BstDEI	CTNAG	3 cut(s)	110, 390, 458
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	230, 336, 381
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	227, 333, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BstZ17I	GTATAC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
CseI	GACGC	1 cut(s)	123
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	8 cut(s)	63, 109, 143, 148, 185, 282, 299, 419
CviKI_1	RGCY	8 cut(s)	63, 109, 143, 148, 185, 282, 299, 419
DdeI	CTNAG	3 cut(s)	110, 390, 458
DpnI	GATC	3 cut(s)	229, 335, 380
DpnII	GATC	3 cut(s)	227, 333, 378
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	466
Eco130I	CCWWGG	2 cut(s)	58, 69
Eco32I	GATATC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	346
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	58, 69
ErhI	CCWWGG	2 cut(s)	58, 69
FaeI	CATG	1 cut(s)	9
FatI	CATG	1 cut(s)	5
FblI	GTMKAC	2 cut(s)	195, 408
Fnu4HI	GCNGC	3 cut(s)	420, 446, 449
Fsp4HI	GCNGC	3 cut(s)	420, 446, 449
FspBI	CTAG	2 cut(s)	26, 144
GluI	GCNGC	3 cut(s)	420, 446, 449
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	2 cut(s)	369, 447
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	9
HinfI	GANTC	3 cut(s)	38, 325, 454
Hpy166II	GTNNAC	2 cut(s)	196, 409
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	3 cut(s)	179, 329, 426
Hpy8I	GTNNAC	2 cut(s)	196, 409
HpyCH4III	ACNGT	2 cut(s)	292, 406
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	3 cut(s)	110, 390, 458
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	227, 333, 378
LmnI	GCTCC	2 cut(s)	68, 428
LpnPI	CCDG	9 cut(s)	3, 144, 171, 207, 314, 333, 351, 360, 411
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	26, 144
MaeIII	GTNAC	2 cut(s)	286, 352
MalI	GATC	3 cut(s)	229, 335, 380
MboI	GATC	3 cut(s)	227, 333, 378
MboII	GAAGA	2 cut(s)	44, 329
MflI	RGATCY	1 cut(s)	378
MluCI	AATT	3 cut(s)	232, 255, 307
MnlI	CCTC	3 cut(s)	175, 313, 435
MslI	CAYNNNNRTG	2 cut(s)	71, 341
MspA1I	CMGCKG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	3 cut(s)	227, 333, 378
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	38, 325, 454
PkrI	GCNGC	3 cut(s)	421, 447, 450
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	378
RseI	CAYNNNNRTG	2 cut(s)	71, 341
SatI	GCNGC	3 cut(s)	420, 446, 449
Sau3AI	GATC	3 cut(s)	227, 333, 378
ScrFI	CCNGG	1 cut(s)	348
SetI	ASST	3 cut(s)	75, 111, 145
SfaNI	GCATC	1 cut(s)	431
SmiMI	CAYNNNNRTG	2 cut(s)	71, 341
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	232, 255, 307
SsiI	CCGC	3 cut(s)	420, 448, 451
SspMI	CTAG	2 cut(s)	26, 144
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	58, 69
TaaI	ACNGT	2 cut(s)	292, 406
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	232, 255, 307
TauI	GCSGC	2 cut(s)	422, 451
TfiI	GAWTC	3 cut(s)	38, 325, 454
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	1 cut(s)	307
XmiI	GTMKAC	2 cut(s)	195, 408
XspI	CTAG	2 cut(s)	26, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.