Rroxscaffold_1G00004160

14 kDa zinc-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004062
Physical Location & Seq
Reverse (-)
5601291 .. 5606590
5300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004160.1

Sequence Viewer

Length: 315 bp
ATGGCTGCAGCCACCTCCTCTTCTCTCTTGAGATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACGTGCTCCCGTGCATGTGCGAGATATAACTTATATATGGCAGACGGATGAGCTTAGATGCCATAAACCCACACCGCTTGATGAAGTTAGGCCAATGGATTTTGAGTTGCCAATGGAGTTTCTTGAGGCTAGGAATGTATACAAGTATGCAAAGAACTATGTTTCTCGGCAATCCGTAAGCTGTTGTTACCACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIT

Protein Analysis

104

Amino Acids

12.22

Weight (kDa)

6.82

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DcpS_C PF11969 12 - 50 9.6e-08 Scavenger mRNA decapping enzyme C-term binding
HIT PF01230 18 - 47 4.3e-08 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 75, 255
AciI CCGC 2 cut(s) 191, 310
AcvI CACGTG 1 cut(s) 119
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 2 cut(s) 169, 297
AluI AGCT 2 cut(s) 169, 297
Alw21I GWGCWC 1 cut(s) 124
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 5, 8
AspS9I GGNCC 1 cut(s) 91
AvaII GGWCC 1 cut(s) 91
BbrPI CACGTG 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 95
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 49, 260
BsaAI YACGTR 1 cut(s) 119
BseBI CCWGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 88, 169
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 124
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 2 cut(s) 191, 310
BspANI GGCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 10
BssMI GATC 1 cut(s) 42
BssNAI GTATAC 2 cut(s) 76, 256
Bst1107I GTATAC 2 cut(s) 76, 256
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 88, 169
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 20
BstZ17I GTATAC 2 cut(s) 76, 256
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 88, 169
Cfr13I GGNCC 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 131
CviJI RGCY 6 cut(s) 5, 11, 169, 208, 245, 297
CviKI_1 RGCY 6 cut(s) 5, 11, 169, 208, 245, 297
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 93
EcoRV GATATC 1 cut(s) 109
FaeI CATG 1 cut(s) 134
FatI CATG 1 cut(s) 130
FblI GTMKAC 2 cut(s) 75, 255
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 2 cut(s) 95, 176
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 246
GluI GCNGC 2 cut(s) 6, 9
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 76, 256
Hpy188III TCNNGA 3 cut(s) 28, 104, 239
Hpy8I GTNNAC 2 cut(s) 76, 256
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 8, 130, 266
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 80, 107
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 124
MnlI CCTC 4 cut(s) 25, 28, 73, 235
MspA1I CMGCKG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
NdeII GATC 1 cut(s) 42
NlaIII CATG 1 cut(s) 134
NmeAIII GCCGAG 1 cut(s) 262
NspI RCATGY 1 cut(s) 134
PkrI GCNGC 2 cut(s) 7, 10
PmaCI CACGTG 1 cut(s) 119
PmlI CACGTG 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 93
PspCI CACGTG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 1 cut(s) 91
PspPPI RGGWCCY 1 cut(s) 91
PstI CTGCAG 1 cut(s) 10
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 124
SetI ASST 5 cut(s) 17, 93, 121, 171, 299
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 91
SmlI CTYRAG 2 cut(s) 28, 239
SmoI CTYRAG 2 cut(s) 28, 239
SsiI CCGC 2 cut(s) 191, 310
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 65
TseI GCWGC 2 cut(s) 5, 8
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 2 cut(s) 176, 280
VpaK11BI GGWCC 1 cut(s) 91
XceI RCATGY 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 75, 255
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.