Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Reverse (-)

44089743 .. 44097851

Gene Structure 8109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCCACGTTCTCTCTCTGGCAGTCTAGTTCCTATCGAATCTATGCCTTATCTTCTCCAAGGCTCCACCAAGGTGCGAGATATAACTTATATATGGCAGACAGATGAGCTTAGGCGCCATAAACCCACACCAGTTGATGAAGCTAGGCCAATGGATTTTGATTTCCCAATGGAGTTTCTTGAGGCTGGGAATGTATACAAGTATGCAAAGAACTATGTTTCTGGGCGATCCGTAAGCTGTTGTTACCATTGCTTGACAGATTACTTGCTTGAGAGTACTTCACAGTTTCGTCAGGAGATCATACATATATTAGTCTTGGCTTGTCTAAATTTTGGAGAAGAGGAGAATCAGGAGATCATTGCCGCATCTGGAGCAGTAGGTCAGTTTGTTGGCCAATTTGCAAAGTTAACAGGTTGTGTCATGTTGTTGGGAGTGCTGGAAGCAAGGAAAAGCAGTGAGGCAGCGGCGGATTCTGAGAATGTTGTAGCTGCCGTAAATATCATAGATCTTCTTTTTCCTCCATCTCCAAACATGTTCAAAAAATTTTCGTCTGAAGAGGTGTCAGCACAAAACCAAGTGAAGGCATCTGTCCAGCGCAAAATTCGACAAAGTATTGCAGAAGAGTACCCTGGACTGGAACAAGTGTTGGATGATTTGCTTCCAAAGAAATCTCCTCTCATTGTTGCTAAATGTCAAAACCATCTAAACTTGGTGTTGGTAAACAGCGTGCCACTATTTTTCAACATACGTGATGGACCATATATGCCTACTCTCAGACTGCTTCATCAATATCCAGATATAATGAAAAAATTACAAGTAGATAGGGGTGCCATAAAGTTTGTTCTTGCTGGTGCAAACATAATGTGTCCAGGTTTAACTTCTCCTGGTGGTGCTTTGGATGACGAAGTGGCTGCAGAAACTCCTGTGGCAATAATGGCAGAAGGAAAGCAGCATGCACTTGCTATTGGCTTCACAAAAATGTCAGCGAAAGAAATTAAACAGATTAACAAGGGAATTGGAGTTGACAACATGCATTATCTTAATGATGGTCTTTGGAAGATGGAACATCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

359

Amino Acids

39.72

Weight (kDa)

5.69

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA	PF17832	184 - 265	4.2e-28	Pre-PUA-like domain
PUA	PF01472	269 - 347	8.6e-17	PUA domain
PUA_elF2D	PF26292	276 - 349	1.9e-12	elF2D, PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	114, 827
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	3 cut(s)	363, 464, 467
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	3 cut(s)	328, 542, 600
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	2 cut(s)	277, 626
AfiI	CCNNNNNNNGG	2 cut(s)	580, 634
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	2 cut(s)	538, 742
AjnI	CCWGG	3 cut(s)	628, 868, 883
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	4 cut(s)	109, 143, 237, 488
AluI	AGCT	4 cut(s)	109, 143, 237, 488
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	146, 391
ApeKI	GCWGC	4 cut(s)	461, 488, 911, 949
ApoI	RAATTY	3 cut(s)	328, 542, 600
AspLEI	GCGC	2 cut(s)	117, 597
AspS9I	GGNCC	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	755
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	2 cut(s)	114, 827
BbvI	GCAGC	4 cut(s)	473, 475, 898, 961
BccI	CCATC	5 cut(s)	529, 708, 746, 1040, 1054
BceAI	ACGGC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	3 cut(s)	630, 870, 885
BfaI	CTAG	3 cut(s)	26, 144, 1070
BfmI	CTRYAG	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	118
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	6 cut(s)	363, 462, 465, 489, 912, 950
BlsI	GCNGC	6 cut(s)	364, 463, 466, 490, 913, 951
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	3 cut(s)	630, 870, 885
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	3 cut(s)	64, 116, 829
BmrFI	CCNGG	3 cut(s)	630, 870, 885
BmsI	GCATC	2 cut(s)	374, 593
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	200, 290
BsaAI	YACGTR	1 cut(s)	749
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	58, 69, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	580, 634
Bse1I	ACTGG	2 cut(s)	131, 639
Bse3DI	GCAATG	2 cut(s)	247, 357
BseBI	CCWGG	3 cut(s)	630, 870, 885
BseDI	CCNNGG	3 cut(s)	58, 69, 628
BseGI	GGATG	2 cut(s)	655, 904
BseLI	CCNNNNNNNGG	2 cut(s)	580, 634
BseMI	GCAATG	2 cut(s)	247, 357
BseMII	CTCAG	2 cut(s)	465, 787
BseNI	ACTGG	2 cut(s)	131, 639
BseRI	GAGGAG	2 cut(s)	356, 663
BseXI	GCAGC	4 cut(s)	473, 475, 898, 961
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	2 cut(s)	148, 393
BshNI	GGYRCC	2 cut(s)	114, 827
BslI	CCNNNNNNNGG	2 cut(s)	580, 634
BsnI	GGCC	2 cut(s)	148, 393
Bsp143I	GATC	4 cut(s)	227, 297, 354, 505
BspACI	CCGC	3 cut(s)	363, 464, 467
BspANI	GGCC	2 cut(s)	148, 393
BspCNI	CTCAG	2 cut(s)	466, 786
BspLI	GGNNCC	3 cut(s)	64, 116, 829
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	114, 827
BsrDI	GCAATG	2 cut(s)	247, 357
BsrI	ACTGG	2 cut(s)	131, 639
BssECI	CCNNGG	3 cut(s)	58, 69, 628
BssMI	GATC	4 cut(s)	227, 297, 354, 505
BssNAI	GTATAC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	58, 69
Bst1107I	GTATAC	1 cut(s)	196
Bst2UI	CCWGG	3 cut(s)	630, 870, 885
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	3 cut(s)	333, 549, 615
BstACI	GRCGYC	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	749
BstC8I	GCNNGC	2 cut(s)	728, 954
BstDEI	CTNAG	3 cut(s)	110, 474, 773
BstF5I	GGATG	2 cut(s)	655, 904
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 597
BstKTI	GATC	4 cut(s)	230, 300, 357, 508
BstMBI	GATC	4 cut(s)	227, 297, 354, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 935
BstNI	CCWGG	3 cut(s)	630, 870, 885
BstNSI	RCATGY	3 cut(s)	535, 956, 1033
BstSCI	CCNGG	3 cut(s)	628, 868, 883
BstSFI	CTRYAG	1 cut(s)	912
BstV1I	GCAGC	4 cut(s)	473, 475, 898, 961
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BstZ17I	GTATAC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	148, 393
BtsCI	GGATG	2 cut(s)	655, 904
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	728, 954
CfoI	GCGC	2 cut(s)	117, 597
Cfr13I	GGNCC	1 cut(s)	755
Csp6I	GTAC	2 cut(s)	276, 625
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	4 cut(s)	421, 532, 953, 1030
CviQI	GTAC	2 cut(s)	276, 625
DdeI	CTNAG	3 cut(s)	110, 474, 773
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	4 cut(s)	229, 299, 356, 507
DpnII	GATC	4 cut(s)	227, 297, 354, 505
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	3 cut(s)	333, 549, 615
EarI	CTCTTC	3 cut(s)	333, 549, 615
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	58, 69
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	573
EcoRII	CCWGG	3 cut(s)	628, 868, 883
EcoT14I	CCWWGG	2 cut(s)	58, 69
EcoT22I	ATGCAT	1 cut(s)	1035
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	58, 69
FaeI	CATG	4 cut(s)	424, 535, 956, 1033
FatI	CATG	4 cut(s)	420, 531, 952, 1029
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	363, 462, 465, 489, 912, 950
FokI	GGATG	2 cut(s)	662, 911
Fsp4HI	GCNGC	6 cut(s)	363, 462, 465, 489, 912, 950
FspBI	CTAG	3 cut(s)	26, 144, 1070
GlaI	GCGC	2 cut(s)	116, 596
GluI	GCNGC	6 cut(s)	363, 462, 465, 489, 912, 950
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	148, 393
HhaI	GCGC	2 cut(s)	117, 597
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	424, 535, 956, 1033
Hin6I	GCGC	2 cut(s)	115, 595
HinP1I	GCGC	2 cut(s)	115, 595
HincII	GTYRAC	2 cut(s)	408, 1024
HindII	GTYRAC	2 cut(s)	408, 1024
HinfI	GANTC	3 cut(s)	38, 346, 470
HpaI	GTTAAC	1 cut(s)	408
Hpy166II	GTNNAC	4 cut(s)	196, 408, 721, 1024
Hpy188I	TCNGA	3 cut(s)	475, 553, 776
Hpy188III	TCNNGA	6 cut(s)	179, 293, 350, 369, 794, 1070
Hpy8I	GTNNAC	4 cut(s)	196, 408, 721, 1024
HpyAV	CCTTC	2 cut(s)	574, 935
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	7, 748
HpyCH4V	TGCA	7 cut(s)	206, 401, 617, 854, 914, 956, 1033
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 935
HpyF3I	CTNAG	3 cut(s)	110, 474, 773
HpySE526I	ACGT	2 cut(s)	7, 748
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	424, 535, 956, 1033
HspAI	GCGC	2 cut(s)	115, 595
KasI	GGCGCC	1 cut(s)	114
KspAI	GTTAAC	1 cut(s)	408
Kzo9I	GATC	4 cut(s)	227, 297, 354, 505
LmnI	GCTCC	2 cut(s)	68, 371
Lsp1109I	GCAGC	4 cut(s)	473, 475, 898, 961
LweI	GCATC	2 cut(s)	374, 593
MaeI	CTAG	3 cut(s)	26, 144, 1070
MaeII	ACGT	2 cut(s)	7, 748
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	4 cut(s)	229, 299, 356, 507
MboI	GATC	4 cut(s)	227, 297, 354, 505
MboII	GAAGA	6 cut(s)	44, 350, 500, 566, 632, 1069
MflI	RGATCY	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	7 cut(s)	328, 395, 542, 600, 809, 993, 1014
MluNI	TGGCCA	1 cut(s)	393
Mly113I	GGCGCC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	6 cut(s)	175, 334, 451, 528, 550, 684
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	1035
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	5 cut(s)	407, 875, 996, 1005, 1041
MslI	CAYNNNNRTG	2 cut(s)	71, 977
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	3 cut(s)	630, 870, 885
MvaI	CCWGG	3 cut(s)	630, 870, 885
MwoI	GCNNNNNNNGC	2 cut(s)	371, 935
NarI	GGCGCC	1 cut(s)	115
NdeII	GATC	4 cut(s)	227, 297, 354, 505
NlaIII	CATG	4 cut(s)	424, 535, 956, 1033
NlaIV	GGNNCC	3 cut(s)	64, 116, 829
NsiI	ATGCAT	1 cut(s)	1035
NspI	RCATGY	3 cut(s)	535, 956, 1033
OliI	CACNNNNGTG	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	956
PciI	ACATGT	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	38, 346, 470
PkrI	GCNGC	6 cut(s)	364, 463, 466, 490, 913, 951
PluTI	GGCGCC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	749
PscI	ACATGT	1 cut(s)	531
Psp6I	CCWGG	3 cut(s)	628, 868, 883
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	3 cut(s)	628, 868, 883
PspN4I	GGNNCC	3 cut(s)	64, 116, 829
PspPI	GGNCC	1 cut(s)	755
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	277, 626
RsaNI	GTAC	2 cut(s)	276, 625
RseI	CAYNNNNRTG	2 cut(s)	71, 977
SaqAI	TTAA	5 cut(s)	407, 875, 996, 1005, 1041
SatI	GCNGC	6 cut(s)	363, 462, 465, 489, 912, 950
Sau3AI	GATC	4 cut(s)	227, 297, 354, 505
Sau96I	GGNCC	1 cut(s)	755
ScaI	AGTACT	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	630, 870, 885
SfaNI	GCATC	2 cut(s)	374, 593
SfcI	CTRYAG	1 cut(s)	912
SfoI	GGCGCC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	2 cut(s)	71, 977
SmlI	CTYRAG	2 cut(s)	179, 269
SmoI	CTYRAG	2 cut(s)	179, 269
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	7 cut(s)	328, 395, 542, 600, 809, 993, 1014
SsiI	CCGC	3 cut(s)	363, 464, 467
SspDI	GGCGCC	1 cut(s)	114
SspMI	CTAG	3 cut(s)	26, 144, 1070
StyD4I	CCNGG	3 cut(s)	628, 868, 883
StyI	CCWWGG	2 cut(s)	58, 69
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	2 cut(s)	10, 751
TaqI	TCGA	2 cut(s)	36, 604
TasI	AATT	7 cut(s)	328, 395, 542, 600, 809, 993, 1014
TatI	WGTACW	1 cut(s)	275
TauI	GCSGC	2 cut(s)	365, 467
TfiI	GAWTC	3 cut(s)	38, 346, 470
Tru1I	TTAA	5 cut(s)	407, 875, 996, 1005, 1041
Tru9I	TTAA	5 cut(s)	407, 875, 996, 1005, 1041
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	4 cut(s)	461, 488, 911, 949
TspDTI	ATGAA	3 cut(s)	153, 773, 818
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	3 cut(s)	328, 542, 600
XbaI	TCTAGA	1 cut(s)	1069
XceI	RCATGY	3 cut(s)	535, 956, 1033
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	3 cut(s)	26, 144, 1070
ZrmI	AGTACT	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.