PUA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09150 |
| fragaria_vesca | FvH4_6g06770 |
| malus_domestica | MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1 |
| prunus_persica | Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1 |
| pyrus_communis | pycom04g17550 pycom12g19810 |
| rosa_chinensis | RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991 |
| rosa_laevigata | RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850 |
| rosa_multiflora | Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740 |
| rosa_rugosa | Rorug03G0011800 |
| rosa_samantha | Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500 |
| rosa_wichuraiana | Rw0G001790 Rw3G005820 Rw3G006110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 11, 69 |
| AcuI | CTGAAG | 1 cut(s) | 42 |
| AfaI | GTAC | 1 cut(s) | 95 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 49, 103 |
| AgsI | TTSAA | 2 cut(s) | 7, 211 |
| AjnI | CCWGG | 3 cut(s) | 97, 337, 352 |
| ApeKI | GCWGC | 2 cut(s) | 380, 418 |
| ApoI | RAATTY | 2 cut(s) | 11, 69 |
| AspLEI | GCGC | 1 cut(s) | 66 |
| AspS9I | GGNCC | 1 cut(s) | 224 |
| AvaII | GGWCC | 1 cut(s) | 224 |
| BbvI | GCAGC | 2 cut(s) | 367, 430 |
| BccI | CCATC | 4 cut(s) | 177, 215, 509, 523 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 362, 396 |
| BciT130I | CCWGG | 3 cut(s) | 99, 339, 354 |
| BfmI | CTRYAG | 1 cut(s) | 381 |
| BisI | GCNGC | 2 cut(s) | 381, 419 |
| BlsI | GCNGC | 2 cut(s) | 382, 420 |
| Bme1390I | CCNGG | 3 cut(s) | 99, 339, 354 |
| Bme18I | GGWCC | 1 cut(s) | 224 |
| BmgT120I | GGNCC | 1 cut(s) | 224 |
| BmrFI | CCNGG | 3 cut(s) | 99, 339, 354 |
| BmsI | GCATC | 1 cut(s) | 62 |
| BsaAI | YACGTR | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 393 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 49, 103 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| BseBI | CCWGG | 3 cut(s) | 99, 339, 354 |
| BseDI | CCNNGG | 2 cut(s) | 97, 393 |
| BseGI | GGATG | 2 cut(s) | 124, 373 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 49, 103 |
| BseMII | CTCAG | 1 cut(s) | 256 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseRI | GAGGAG | 1 cut(s) | 132 |
| BseXI | GCAGC | 2 cut(s) | 367, 430 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 49, 103 |
| Bsp143I | GATC | 1 cut(s) | 471 |
| BspCNI | CTCAG | 1 cut(s) | 255 |
| BspMAI | CTGCAG | 1 cut(s) | 385 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssECI | CCNNGG | 2 cut(s) | 97, 393 |
| BssMI | GATC | 1 cut(s) | 471 |
| Bst2UI | CCWGG | 3 cut(s) | 99, 339, 354 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 84 |
| BstBAI | YACGTR | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 1 cut(s) | 423 |
| BstDEI | CTNAG | 1 cut(s) | 242 |
| BstDSI | CCRYGG | 1 cut(s) | 393 |
| BstF5I | GGATG | 2 cut(s) | 124, 373 |
| BstHHI | GCGC | 1 cut(s) | 66 |
| BstKTI | GATC | 1 cut(s) | 474 |
| BstMBI | GATC | 1 cut(s) | 471 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 404 |
| BstNI | CCWGG | 3 cut(s) | 99, 339, 354 |
| BstNSI | RCATGY | 2 cut(s) | 425, 502 |
| BstSCI | CCNGG | 3 cut(s) | 97, 337, 352 |
| BstSFI | CTRYAG | 1 cut(s) | 381 |
| BstV1I | GCAGC | 2 cut(s) | 367, 430 |
| BtgI | CCRYGG | 1 cut(s) | 393 |
| BtsCI | GGATG | 2 cut(s) | 124, 373 |
| Cac8I | GCNNGC | 1 cut(s) | 423 |
| CfoI | GCGC | 1 cut(s) | 66 |
| Cfr13I | GGNCC | 1 cut(s) | 224 |
| Csp6I | GTAC | 1 cut(s) | 94 |
| CviAII | CATG | 2 cut(s) | 422, 499 |
| CviJI | RGCY | 2 cut(s) | 380, 438 |
| CviKI_1 | RGCY | 2 cut(s) | 380, 438 |
| CviQI | GTAC | 1 cut(s) | 94 |
| DdeI | CTNAG | 1 cut(s) | 242 |
| DpnI | GATC | 1 cut(s) | 473 |
| DpnII | GATC | 1 cut(s) | 471 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 84 |
| EarI | CTCTTC | 2 cut(s) | 18, 84 |
| Eco47I | GGWCC | 1 cut(s) | 224 |
| Eco57I | CTGAAG | 1 cut(s) | 42 |
| EcoRII | CCWGG | 3 cut(s) | 97, 337, 352 |
| EcoT22I | ATGCAT | 1 cut(s) | 504 |
| FaeI | CATG | 2 cut(s) | 425, 502 |
| FaiI | YATR | 8 cut(s) | 215, 229, 231, 233, 269, 329, 423, 500 |
| FatI | CATG | 2 cut(s) | 421, 498 |
| Fnu4HI | GCNGC | 2 cut(s) | 381, 419 |
| FokI | GGATG | 2 cut(s) | 131, 380 |
| Fsp4HI | GCNGC | 2 cut(s) | 381, 419 |
| GlaI | GCGC | 1 cut(s) | 65 |
| GluI | GCNGC | 2 cut(s) | 381, 419 |
| HhaI | GCGC | 1 cut(s) | 66 |
| Hin1II | CATG | 2 cut(s) | 425, 502 |
| Hin6I | GCGC | 1 cut(s) | 64 |
| HinP1I | GCGC | 1 cut(s) | 64 |
| HincII | GTYRAC | 1 cut(s) | 493 |
| HindII | GTYRAC | 1 cut(s) | 493 |
| Hpy166II | GTNNAC | 2 cut(s) | 190, 493 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 245 |
| Hpy188III | TCNNGA | 1 cut(s) | 263 |
| Hpy8I | GTNNAC | 2 cut(s) | 190, 493 |
| HpyAV | CCTTC | 2 cut(s) | 43, 404 |
| HpyCH4IV | ACGT | 1 cut(s) | 217 |
| HpyCH4V | TGCA | 6 cut(s) | 86, 299, 323, 383, 425, 502 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 404 |
| HpyF3I | CTNAG | 1 cut(s) | 242 |
| HpySE526I | ACGT | 1 cut(s) | 217 |
| Hsp92II | CATG | 2 cut(s) | 425, 502 |
| HspAI | GCGC | 1 cut(s) | 64 |
| Kzo9I | GATC | 1 cut(s) | 471 |
| Lsp1109I | GCAGC | 2 cut(s) | 367, 430 |
| LweI | GCATC | 1 cut(s) | 62 |
| MaeII | ACGT | 1 cut(s) | 217 |
| MalI | GATC | 1 cut(s) | 473 |
| MboI | GATC | 1 cut(s) | 471 |
| MboII | GAAGA | 4 cut(s) | 9, 35, 101, 538 |
| MluCI | AATT | 5 cut(s) | 11, 69, 278, 462, 483 |
| MmeI | TCCRAC | 1 cut(s) | 96 |
| MnlI | CCTC | 2 cut(s) | 19, 153 |
| Mph1103I | ATGCAT | 1 cut(s) | 504 |
| MseI | TTAA | 3 cut(s) | 344, 465, 510 |
| MslI | CAYNNNNRTG | 1 cut(s) | 446 |
| MspR9I | CCNGG | 3 cut(s) | 99, 339, 354 |
| MvaI | CCWGG | 3 cut(s) | 99, 339, 354 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 404 |
| NdeII | GATC | 1 cut(s) | 471 |
| NlaIII | CATG | 2 cut(s) | 425, 502 |
| NsiI | ATGCAT | 1 cut(s) | 504 |
| NspI | RCATGY | 2 cut(s) | 425, 502 |
| PaeI | GCATGC | 1 cut(s) | 425 |
| PkrI | GCNGC | 2 cut(s) | 382, 420 |
| Ppu21I | YACGTR | 1 cut(s) | 218 |
| Psp6I | CCWGG | 3 cut(s) | 97, 337, 352 |
| PspGI | CCWGG | 3 cut(s) | 97, 337, 352 |
| PspPI | GGNCC | 1 cut(s) | 224 |
| PstI | CTGCAG | 1 cut(s) | 385 |
| RsaI | GTAC | 1 cut(s) | 95 |
| RsaNI | GTAC | 1 cut(s) | 94 |
| RseI | CAYNNNNRTG | 1 cut(s) | 446 |
| SaqAI | TTAA | 3 cut(s) | 344, 465, 510 |
| SatI | GCNGC | 2 cut(s) | 381, 419 |
| Sau3AI | GATC | 1 cut(s) | 471 |
| Sau96I | GGNCC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 3 cut(s) | 99, 339, 354 |
| SetI | ASST | 3 cut(s) | 30, 220, 343 |
| SfaNI | GCATC | 1 cut(s) | 62 |
| SfcI | CTRYAG | 1 cut(s) | 381 |
| SinI | GGWCC | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 446 |
| SphI | GCATGC | 1 cut(s) | 425 |
| Sse9I | AATT | 5 cut(s) | 11, 69, 278, 462, 483 |
| StyD4I | CCNGG | 3 cut(s) | 97, 337, 352 |
| TaiI | ACGT | 1 cut(s) | 220 |
| TaqI | TCGA | 1 cut(s) | 73 |
| TasI | AATT | 5 cut(s) | 11, 69, 278, 462, 483 |
| Tru1I | TTAA | 3 cut(s) | 344, 465, 510 |
| Tru9I | TTAA | 3 cut(s) | 344, 465, 510 |
| TseI | GCWGC | 2 cut(s) | 380, 418 |
| TspDTI | ATGAA | 2 cut(s) | 242, 287 |
| VpaK11BI | GGWCC | 1 cut(s) | 224 |
| XapI | RAATTY | 2 cut(s) | 11, 69 |
| XceI | RCATGY | 2 cut(s) | 425, 502 |
| Zsp2I | ATGCAT | 1 cut(s) | 504 |