Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

28588459 .. 28591912

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1198400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCGAAATTACCTAGTTGGGCCTTAATAAAGGATCAGTCTCAGTCCACAGAAAAGTCACCTCGCCGAAGATCACACATAGCCCAACCCAAAACCCTAATTCTACACCGGCGCGGGGGAAAAGTGCTGCAAAACAAAACTTTGGAACCAGAATTCAAGGTATATTGTTCGACCTTAAAATCAATCGTCGAAGGGTTTTATTTGCTTGCTGCTGAAGATCTTAGATTTTCTCTTTCCTCCGTTTCCAGAATGTTCAAGAAGTTTTCCACTGAAGAGGTGTCTGCACAAAACCAAGTGAAGGCATCAGTCCAGCGCAAAATTCGGCAAAGTATTGCAGATGAGTACCCTGGGCTCAAACAAGTGTTGGAAGATTTGATTCCTAAGAAGTCTCCTCTAATTGTGGCTAAATGTCAGAACCATCTCAATTTGGTTGTGGTAAACAACGTGCCACTATTTTTCAACATTCGTGATGGACCATATATGCCTACCCTAAGACTTCTTCATCAGTATCCAGATATAATGAAAAAGTTGCAAGTAGACAGGGGTGCCATTAGGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCAGGTCTTACTTCTCCTGGAGGTGCTTTGGATGATGAAGTGGGAGCAGAAACTCCTGTGGCAATCATGGCAGAAGGGAAGCAACATGCTCTCGCAATTGGTTTCACAAAAATGTCAGCAAAAGAAATAAGAGATATCAACAAGGGAATCGGAGTTGACAACATGCATTATCTTAATGACGGTCTTTGGAAGATGGAACATCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

265

Amino Acids

29.63

Weight (kDa)

9.48

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA	PF17832	90 - 171	1.9e-28	Pre-PUA-like domain
PUA	PF01472	175 - 253	1.1e-16	PUA domain
PUA_elF2D	PF26292	183 - 255	4.6e-12	elF2D, PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	152, 318
AcuI	CTGAAG	2 cut(s)	234, 291
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	115, 298
AgsI	TTSAA	3 cut(s)	157, 256, 460
AjnI	CCWGG	3 cut(s)	346, 586, 601
Alw26I	GTCTC	2 cut(s)	45, 393
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	127, 209
ApoI	RAATTY	2 cut(s)	152, 318
AspLEI	GCGC	2 cut(s)	114, 315
AspS9I	GGNCC	2 cut(s)	21, 473
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	114, 196
BccI	CCATC	3 cut(s)	426, 464, 772
BciT130I	CCWGG	3 cut(s)	348, 588, 603
BciVI	GTATCC	1 cut(s)	519
BcoDI	GTCTC	2 cut(s)	45, 393
BfaI	CTAG	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	519
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	128, 210
BlsI	GCNGC	2 cut(s)	129, 211
Bme1390I	CCNGG	3 cut(s)	348, 588, 603
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	21, 473
BmiI	GGNNCC	2 cut(s)	147, 547
BmrFI	CCNGG	3 cut(s)	348, 588, 603
BmsI	GCATC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	346, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 298
Bse118I	RCCGGY	1 cut(s)	108
BseBI	CCWGG	3 cut(s)	348, 588, 603
BseDI	CCNNGG	2 cut(s)	346, 347
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	2 cut(s)	115, 298
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	114, 196
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	545
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	115, 298
BsmAI	GTCTC	2 cut(s)	45, 393
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	34, 71, 217
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	147, 547
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	346, 347
BssMI	GATC	3 cut(s)	34, 71, 217
Bst2UI	CCWGG	3 cut(s)	348, 588, 603
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	4 cut(s)	42, 221, 381, 491
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	114, 315
BstKTI	GATC	3 cut(s)	37, 74, 220
BstMAI	GTCTC	2 cut(s)	45, 393
BstMBI	GATC	3 cut(s)	34, 71, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	3 cut(s)	348, 588, 603
BstNSI	RCATGY	2 cut(s)	674, 751
BstSCI	CCNGG	3 cut(s)	346, 586, 601
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	114, 196
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	2 cut(s)	114, 315
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	21, 473
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	3 cut(s)	652, 671, 748
CviJI	RGCY	4 cut(s)	23, 83, 352, 404
CviKI_1	RGCY	4 cut(s)	23, 83, 352, 404
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	4 cut(s)	42, 221, 381, 491
DpnI	GATC	3 cut(s)	36, 73, 219
DpnII	GATC	3 cut(s)	34, 71, 217
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	234, 291
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	3 cut(s)	346, 586, 601
EcoRV	GATATC	1 cut(s)	721
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	3 cut(s)	655, 674, 751
FatI	CATG	3 cut(s)	651, 670, 747
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	128, 210
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	128, 210
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	2 cut(s)	113, 314
GluI	GCNGC	2 cut(s)	128, 210
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	2 cut(s)	114, 315
Hin1II	CATG	3 cut(s)	655, 674, 751
Hin6I	GCGC	2 cut(s)	112, 313
HinP1I	GCGC	2 cut(s)	112, 313
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	2 cut(s)	376, 732
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	4 cut(s)	48, 439, 538, 742
Hpy188I	TCNGA	2 cut(s)	414, 737
Hpy188III	TCNNGA	5 cut(s)	246, 256, 467, 512, 788
Hpy8I	GTNNAC	4 cut(s)	48, 439, 538, 742
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	185, 292, 653
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	6 cut(s)	130, 284, 335, 532, 572, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	4 cut(s)	42, 221, 381, 491
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	655, 674, 751
HspAI	GCGC	2 cut(s)	112, 313
Kzo9I	GATC	3 cut(s)	34, 71, 217
LmnI	GCTCC	1 cut(s)	629
Lsp1109I	GCAGC	2 cut(s)	114, 196
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	3 cut(s)	36, 73, 219
MboI	GATC	3 cut(s)	34, 71, 217
MboII	GAAGA	6 cut(s)	81, 227, 284, 380, 491, 787
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	7 cut(s)	8, 99, 152, 318, 396, 424, 681
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	5 cut(s)	72, 247, 268, 402, 599
Mph1103I	ATGCAT	1 cut(s)	753
MseI	TTAA	3 cut(s)	26, 176, 759
MslI	CAYNNNNRTG	1 cut(s)	695
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	348, 588, 603
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	3 cut(s)	348, 588, 603
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	653
NdeII	GATC	3 cut(s)	34, 71, 217
NlaIII	CATG	3 cut(s)	655, 674, 751
NlaIV	GGNNCC	2 cut(s)	147, 547
NmuCI	GTSAC	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	2 cut(s)	674, 751
PasI	CCCWGGG	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	376, 732
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	2 cut(s)	129, 211
Psp6I	CCWGG	3 cut(s)	346, 586, 601
PspGI	CCWGG	3 cut(s)	346, 586, 601
PspN4I	GGNNCC	2 cut(s)	147, 547
PspPI	GGNCC	2 cut(s)	21, 473
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	3 cut(s)	26, 176, 759
SatI	GCNGC	2 cut(s)	128, 210
Sau3AI	GATC	3 cut(s)	34, 71, 217
Sau96I	GGNCC	2 cut(s)	21, 473
ScrFI	CCNGG	3 cut(s)	348, 588, 603
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	9 cut(s)	16, 64, 162, 176, 279, 447, 557, 592, 610
SfaNI	GCATC	1 cut(s)	311
SgrAI	CRCCGGYG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	695
Sse9I	AATT	7 cut(s)	8, 99, 152, 318, 396, 424, 681
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	346, 586, 601
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	5, 170, 189
TasI	AATT	7 cut(s)	8, 99, 152, 318, 396, 424, 681
TfiI	GAWTC	2 cut(s)	376, 732
Tru1I	TTAA	3 cut(s)	26, 176, 759
Tru9I	TTAA	3 cut(s)	26, 176, 759
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	127, 209
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	491, 536, 636
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	2 cut(s)	152, 318
XceI	RCATGY	2 cut(s)	674, 751
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.