RLG00000018859

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004062
Physical Location & Seq
Forward (+)
38051600 .. 38054548
2949 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018859

Sequence Viewer

Length: 579 bp
ATGCCACGTTCTCTCTCTGGCAGTCTAGTTCCTATCGAATCTATGCCTTATCTTTTCCAAGGCTCCACCAAGGTGCGAGATATAACTTATATATGGCAGACAGATGAGCTTAGACGCTATAAACCCACACCAGTTGATGAAGCTAGGCCAATGGATTTTGAGTTCCCAATGGAGTTTCTTGAGGCTGGGAATGTATACAAGTATGCAAAGAACTATGTTTCTGGGCGATCCAATTTTATTTGTTCCACAGCAATAATTTTAGTTGATATCTCATATTATGGCTATGTAACAGTCTTGGCTTGTCTAAATTTTGGAGAAGAGGAGAATCAGGAGATCATTGGTATGCCTGGAGTGACTGCTTATGCTGGTTTTTATGAGATCTGCTCTCCTAAGAAAGGAGAGACAGTCTACATTTCAGCCGCATCTGGAGCAGTAGGTCAGTTTGTTGGCCAATTTACAAAGTTAACAGGTTGTGTCATGTTGTTGGGAGTGCTGGAAGCAAGGAAAAGCAGTGAGGCAGCGGCGGATTCTGGGAATGTTGTAGCTGCCGAAAATGTAAGTGCTTGGAGCACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

193

Amino Acids

21.06

Weight (kDa)

4.87

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 195, 408
AciI CCGC 3 cut(s) 420, 521, 524
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 395
AjnI CCWGG 1 cut(s) 346
AleI CACNNNNGTG 1 cut(s) 71
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 3 cut(s) 109, 143, 545
AluI AGCT 3 cut(s) 109, 143, 545
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 222
AoxI GGCC 2 cut(s) 146, 448
ApeKI GCWGC 2 cut(s) 518, 545
ApoI RAATTY 1 cut(s) 307
BalI TGGCCA 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 2 cut(s) 530, 532
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 2 cut(s) 26, 144
BglII AGATCT 1 cut(s) 378
BisI GCNGC 4 cut(s) 420, 519, 522, 546
BlsI GCNGC 4 cut(s) 421, 520, 523, 547
Bme1390I CCNGG 1 cut(s) 348
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 2 cut(s) 369, 447
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 58, 69
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 58, 69
BseLI CCNNNNNNNGG 1 cut(s) 395
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 530, 532
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 2 cut(s) 148, 450
BsiHKAI GWGCWC 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 2 cut(s) 148, 450
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 3 cut(s) 227, 333, 378
BspACI CCGC 3 cut(s) 420, 521, 524
BspANI GGCC 2 cut(s) 148, 450
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 58, 69
BssMI GATC 3 cut(s) 227, 333, 378
BssNAI GTATAC 1 cut(s) 196
BssT1I CCWWGG 2 cut(s) 58, 69
Bst1107I GTATAC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 292, 406
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 110, 390
BstENI CCTNNNNNAGG 1 cut(s) 393
BstKTI GATC 3 cut(s) 230, 336, 381
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 3 cut(s) 227, 333, 378
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 530, 532
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
BstZ17I GTATAC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 148, 450
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
CseI GACGC 1 cut(s) 123
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 1 cut(s) 478
DdeI CTNAG 2 cut(s) 110, 390
DpnI GATC 3 cut(s) 229, 335, 380
DpnII GATC 3 cut(s) 227, 333, 378
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EciI GGCGGA 1 cut(s) 539
Eco130I CCWWGG 2 cut(s) 58, 69
Eco32I GATATC 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 346
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 58, 69
ErhI CCWWGG 2 cut(s) 58, 69
FaeI CATG 1 cut(s) 481
FatI CATG 1 cut(s) 477
FblI GTMKAC 2 cut(s) 195, 408
Fnu4HI GCNGC 4 cut(s) 420, 519, 522, 546
Fsp4HI GCNGC 4 cut(s) 420, 519, 522, 546
FspBI CTAG 2 cut(s) 26, 144
GluI GCNGC 4 cut(s) 420, 519, 522, 546
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 2 cut(s) 369, 447
HaeIII GGCC 2 cut(s) 148, 450
HgaI GACGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 481
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HinfI GANTC 3 cut(s) 38, 325, 527
HpaI GTTAAC 1 cut(s) 465
Hpy166II GTNNAC 3 cut(s) 196, 409, 465
Hpy188III TCNNGA 3 cut(s) 179, 329, 426
Hpy8I GTNNAC 3 cut(s) 196, 409, 465
HpyCH4III ACNGT 2 cut(s) 292, 406
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 2 cut(s) 110, 390
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 481
KspAI GTTAAC 1 cut(s) 465
Kzo9I GATC 3 cut(s) 227, 333, 378
LmnI GCTCC 3 cut(s) 68, 428, 567
Lsp1109I GCAGC 2 cut(s) 530, 532
LweI GCATC 1 cut(s) 431
MaeI CTAG 2 cut(s) 26, 144
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 286, 352
MalI GATC 3 cut(s) 229, 335, 380
MboI GATC 3 cut(s) 227, 333, 378
MboII GAAGA 1 cut(s) 329
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 572
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 4 cut(s) 232, 255, 307, 452
MluNI TGGCCA 1 cut(s) 450
MnlI CCTC 3 cut(s) 175, 313, 508
Mox20I TGGCCA 1 cut(s) 450
MscI TGGCCA 1 cut(s) 450
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 2 cut(s) 71, 341
Msp20I TGGCCA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 3 cut(s) 227, 333, 378
NlaIII CATG 1 cut(s) 481
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 71
PfeI GAWTC 3 cut(s) 38, 325, 527
PkrI GCNGC 4 cut(s) 421, 520, 523, 547
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 378
RseI CAYNNNNRTG 2 cut(s) 71, 341
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 4 cut(s) 420, 519, 522, 546
Sau3AI GATC 3 cut(s) 227, 333, 378
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 572
SetI ASST 7 cut(s) 10, 75, 111, 145, 439, 472, 547
SfaNI GCATC 1 cut(s) 431
SmiMI CAYNNNNRTG 2 cut(s) 71, 341
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 4 cut(s) 232, 255, 307, 452
SsiI CCGC 3 cut(s) 420, 521, 524
SspMI CTAG 2 cut(s) 26, 144
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 2 cut(s) 58, 69
TaaI ACNGT 2 cut(s) 292, 406
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 36
TasI AATT 4 cut(s) 232, 255, 307, 452
TauI GCSGC 2 cut(s) 422, 524
TfiI GAWTC 3 cut(s) 38, 325, 527
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 518, 545
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 517
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 195, 408
XspI CTAG 2 cut(s) 26, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.