Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09150 |
| fragaria_vesca | FvH4_6g06770 |
| malus_domestica | MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1 |
| prunus_persica | Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1 |
| pyrus_communis | pycom04g17550 pycom12g19810 |
| rosa_chinensis | RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991 |
| rosa_laevigata | RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850 |
| rosa_multiflora | Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740 |
| rosa_rugosa | Rorug03G0011800 |
| rosa_samantha | Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500 |
| rosa_wichuraiana | Rw0G001790 Rw3G005820 Rw3G006110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 232 |
| AccI | GTMKAC | 1 cut(s) | 45 |
| AclWI | GGATC | 2 cut(s) | 72, 273 |
| AflII | CTTAAG | 1 cut(s) | 82 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 1 cut(s) | 239 |
| AluI | AGCT | 1 cut(s) | 239 |
| AlwI | GGATC | 2 cut(s) | 72, 273 |
| BanI | GGYRCC | 1 cut(s) | 232 |
| BbvCI | CCTCAGC | 1 cut(s) | 180 |
| BfaI | CTAG | 2 cut(s) | 36, 313 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BfrI | CTTAAG | 1 cut(s) | 82 |
| BglII | AGATCT | 1 cut(s) | 214 |
| BmiI | GGNNCC | 1 cut(s) | 234 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| BpuEI | CTTGAG | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 1 cut(s) | 130 |
| Bse3DI | GCAATG | 1 cut(s) | 306 |
| BseDI | CCNNGG | 1 cut(s) | 130 |
| BseGI | GGATG | 1 cut(s) | 126 |
| BseMI | GCAATG | 1 cut(s) | 306 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseRI | GAGGAG | 2 cut(s) | 150, 158 |
| BshNI | GGYRCC | 1 cut(s) | 232 |
| Bsp143I | GATC | 4 cut(s) | 77, 156, 214, 265 |
| Bsp19I | CCATGG | 1 cut(s) | 130 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspLI | GGNNCC | 1 cut(s) | 234 |
| BspPI | GGATC | 2 cut(s) | 72, 273 |
| BspT107I | GGYRCC | 1 cut(s) | 232 |
| BspTI | CTTAAG | 1 cut(s) | 82 |
| BsrDI | GCAATG | 1 cut(s) | 306 |
| BssECI | CCNNGG | 1 cut(s) | 130 |
| BssMI | GATC | 4 cut(s) | 77, 156, 214, 265 |
| BssNAI | GTATAC | 1 cut(s) | 46 |
| BssT1I | CCWWGG | 1 cut(s) | 130 |
| Bst1107I | GTATAC | 1 cut(s) | 46 |
| Bst6I | CTCTTC | 2 cut(s) | 135, 245 |
| BstAFI | CTTAAG | 1 cut(s) | 82 |
| BstC8I | GCNNGC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstDSI | CCRYGG | 1 cut(s) | 130 |
| BstF5I | GGATG | 1 cut(s) | 126 |
| BstKTI | GATC | 4 cut(s) | 80, 159, 217, 268 |
| BstMBI | GATC | 4 cut(s) | 77, 156, 214, 265 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstX2I | RGATCY | 2 cut(s) | 77, 214 |
| BstYI | RGATCY | 2 cut(s) | 77, 214 |
| BstZ17I | GTATAC | 1 cut(s) | 46 |
| BtgI | CCRYGG | 1 cut(s) | 130 |
| BtsCI | GGATG | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 1 cut(s) | 237 |
| CviAII | CATG | 2 cut(s) | 131, 176 |
| CviJI | RGCY | 4 cut(s) | 35, 206, 239, 281 |
| CviKI_1 | RGCY | 4 cut(s) | 35, 206, 239, 281 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 4 cut(s) | 79, 158, 216, 267 |
| DpnII | GATC | 4 cut(s) | 77, 156, 214, 265 |
| Eam1104I | CTCTTC | 2 cut(s) | 135, 245 |
| EarI | CTCTTC | 2 cut(s) | 135, 245 |
| Eco130I | CCWWGG | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 1 cut(s) | 130 |
| ErhI | CCWWGG | 1 cut(s) | 130 |
| FaeI | CATG | 2 cut(s) | 134, 179 |
| FaiI | YATR | 6 cut(s) | 46, 54, 66, 132, 177, 242 |
| FatI | CATG | 2 cut(s) | 130, 175 |
| FblI | GTMKAC | 1 cut(s) | 45 |
| FokI | GGATG | 1 cut(s) | 113 |
| FspBI | CTAG | 2 cut(s) | 36, 313 |
| Hin1II | CATG | 2 cut(s) | 134, 179 |
| HinfI | GANTC | 1 cut(s) | 148 |
| Hpy166II | GTNNAC | 1 cut(s) | 46 |
| Hpy188I | TCNGA | 1 cut(s) | 75 |
| Hpy188III | TCNNGA | 4 cut(s) | 29, 152, 166, 269 |
| Hpy8I | GTNNAC | 1 cut(s) | 46 |
| HpyAV | CCTTC | 3 cut(s) | 196, 256, 292 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 212, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| Hsp92II | CATG | 2 cut(s) | 134, 179 |
| Kzo9I | GATC | 4 cut(s) | 77, 156, 214, 265 |
| LpnPI | CCDG | 2 cut(s) | 137, 249 |
| MaeI | CTAG | 2 cut(s) | 36, 313 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 4 cut(s) | 79, 158, 216, 267 |
| MboI | GATC | 4 cut(s) | 77, 156, 214, 265 |
| MboII | GAAGA | 4 cut(s) | 152, 259, 262, 271 |
| MflI | RGATCY | 2 cut(s) | 77, 214 |
| MnlI | CCTC | 6 cut(s) | 25, 128, 136, 175, 223, 248 |
| MseI | TTAA | 1 cut(s) | 83 |
| MspCI | CTTAAG | 1 cut(s) | 82 |
| NcoI | CCATGG | 1 cut(s) | 130 |
| NdeII | GATC | 4 cut(s) | 77, 156, 214, 265 |
| NlaIII | CATG | 2 cut(s) | 134, 179 |
| NlaIV | GGNNCC | 1 cut(s) | 234 |
| PfeI | GAWTC | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 1 cut(s) | 234 |
| PsuI | RGATCY | 2 cut(s) | 77, 214 |
| SaqAI | TTAA | 1 cut(s) | 83 |
| Sau3AI | GATC | 4 cut(s) | 77, 156, 214, 265 |
| SetI | ASST | 3 cut(s) | 234, 241, 314 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| SmlI | CTYRAG | 2 cut(s) | 29, 82 |
| SmoI | CTYRAG | 2 cut(s) | 29, 82 |
| SspMI | CTAG | 2 cut(s) | 36, 313 |
| StyI | CCWWGG | 1 cut(s) | 130 |
| TaqI | TCGA | 2 cut(s) | 165, 200 |
| TfiI | GAWTC | 1 cut(s) | 148 |
| Tru1I | TTAA | 1 cut(s) | 83 |
| Tru9I | TTAA | 1 cut(s) | 83 |
| TspDTI | ATGAA | 1 cut(s) | 164 |
| Vha464I | CTTAAG | 1 cut(s) | 82 |
| XmiI | GTMKAC | 1 cut(s) | 45 |
| XspI | CTAG | 2 cut(s) | 36, 313 |