Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

924631 .. 925387

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0011800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCAAACCTCAGTCGCAGAAGAAGCCTCTGTCCAGAGAGCAACGTACAGAGCATCTCTTCCGTCTGGTCCCTTATGTGGTTTTCCTCGCCAGCAGTTATGTTCTCTACCCTCCGGAATGGTGTTTGGAGGCGGCGAACGACAATAAGCACGTAACCCTGATCCTGGTGTTGGATTGCATGGTCTCTGCCGGACTGGCCTACTCCCTCTTCAAGCTCAAAACCTTAATAACCTCAGATCTCCTTTGCCACCAGCTGATGATCCACCTCGGGTTCATCTCCACCTACGTCGCCGCCTTGTTCTTCCTCTCCTTCACTAGCGTTCCGAAGCTCCACCACAGCGTGCGTGTGGCAGTAGCTGTTGCCACCAGTTTGGTGCTTTGGAGGCGTAAATTTGTCGAAGAAAATGACAAATCATTAGAGGATAGTGGGTGGATCTGTGAAGTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

150

Amino Acids

17.08

Weight (kDa)

8.36

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	2 cut(s)	134, 294
AclWI	GGATC	3 cut(s)	157, 256, 443
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	79, 166, 172
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	217, 256, 331, 359
AluI	AGCT	4 cut(s)	217, 256, 331, 359
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	157, 256, 443
AlwNI	CAGNNNCTG	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	2 cut(s)	3, 198
ApoI	RAATTY	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	197
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	2 cut(s)	135, 294
BlsI	GCNGC	2 cut(s)	136, 295
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 166, 172
Bse1I	ACTGG	2 cut(s)	201, 369
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	79, 166, 172
BseMII	CTCAG	2 cut(s)	26, 249
BseNI	ACTGG	2 cut(s)	201, 369
BshFI	GGCC	2 cut(s)	5, 200
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	116, 192
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	79, 166, 172
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	5, 200
Bso31I	GGTCTC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	4 cut(s)	162, 238, 261, 435
BspACI	CCGC	2 cut(s)	134, 294
BspANI	GGCC	2 cut(s)	5, 200
BspCNI	CTCAG	2 cut(s)	25, 248
BspEI	TCCGGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	3 cut(s)	157, 256, 443
BspTNI	GGTCTC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	201, 369
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	4 cut(s)	162, 238, 261, 435
Bst2UI	CCWGG	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	65, 215
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	94, 344
BstDEI	CTNAG	2 cut(s)	12, 235
BstKTI	GATC	4 cut(s)	165, 241, 264, 438
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	162, 238, 261, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 197, 385
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	238, 435
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	2 cut(s)	238, 435
BsuRI	GGCC	2 cut(s)	5, 200
Cac8I	GCNNGC	2 cut(s)	94, 344
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	7 cut(s)	5, 28, 200, 217, 256, 331, 359
CviKI_1	RGCY	7 cut(s)	5, 28, 200, 217, 256, 331, 359
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	2 cut(s)	12, 235
DpnI	GATC	4 cut(s)	164, 240, 263, 437
DpnII	GATC	4 cut(s)	162, 238, 261, 435
DraIII	CACNNNGTG	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	65, 215
EarI	CTCTTC	2 cut(s)	65, 215
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	184
FaiI	YATR	3 cut(s)	78, 102, 182
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	135, 294
Fsp4HI	GCNGC	2 cut(s)	135, 294
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	2 cut(s)	135, 294
HaeIII	GGCC	2 cut(s)	5, 200
HapII	CCGG	2 cut(s)	116, 192
Hin1II	CATG	1 cut(s)	184
HpaII	CCGG	2 cut(s)	116, 192
Hpy188I	TCNGA	2 cut(s)	238, 327
Hpy188III	TCNNGA	2 cut(s)	36, 116
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	322
HpyCH4IV	ACGT	3 cut(s)	46, 153, 288
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 197, 385
HpyF3I	CTNAG	2 cut(s)	12, 235
HpySE526I	ACGT	3 cut(s)	46, 153, 288
Hsp92II	CATG	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	162, 238, 261, 435
LmnI	GCTCC	1 cut(s)	336
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	3 cut(s)	46, 153, 288
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	164, 240, 263, 437
MboI	GATC	4 cut(s)	162, 238, 261, 435
MboII	GAAGA	5 cut(s)	34, 52, 202, 295, 413
MflI	RGATCY	2 cut(s)	238, 435
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	392, 447
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	2 cut(s)	116, 192
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	25, 197, 385
NdeII	GATC	4 cut(s)	162, 238, 261, 435
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	136, 295
Ppu21I	YACGTR	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	238, 435
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	2 cut(s)	135, 294
Sau3AI	GATC	4 cut(s)	162, 238, 261, 435
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	2 cut(s)	392, 447
SsiI	CCGC	2 cut(s)	134, 294
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	165
TaiI	ACGT	3 cut(s)	49, 156, 291
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	392, 447
TauI	GCSGC	2 cut(s)	137, 296
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	392
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.