Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Reverse (-)

32649071 .. 32649704

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTGCAGCCCGTAATTGGTTTGGGAGTGGCTAAAGTCCCGGAATCTGGGATCCAAAGTTTAAGCCAGGGGACTTGGTTTGGGGTCACACTGGTTGGGAAGAATATAGTGTCATCACCACAGAGTCTCTCGATTAAGATTCACCACACCGATGTGCCTCTCTCTTACTATACCGGACTTCTCGGTATGCCTGGAGTGATCGCTTATGCTGGTTTTTATGAGATCTGCTCTCCTAAGAAAGGAGAGACAGTCTACATTTCAGCCGCATCCGGAGCGGTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0032440 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

94

Amino Acids

9.74

Weight (kDa)

7.87

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	2 cut(s)	264, 275
AclWI	GGATC	2 cut(s)	46, 59
AfiI	CCNNNNNNNGG	3 cut(s)	17, 47, 239
AjnI	CCWGG	2 cut(s)	66, 190
AleI	CACNNNNGTG	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	131, 239
AlwI	GGATC	2 cut(s)	46, 59
Aor13HI	TCCGGA	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	108, 134
BamHI	GGATCC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	2 cut(s)	68, 192
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	131, 239
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	2 cut(s)	8, 264
BlsI	GCNGC	2 cut(s)	9, 265
Bme1390I	CCNGG	3 cut(s)	41, 68, 192
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	3 cut(s)	41, 68, 192
BmsI	GCATC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	2 cut(s)	173, 269
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 47, 239
Bse1I	ACTGG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	68, 192
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	3 cut(s)	17, 47, 239
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	41, 174, 270
BslFI	GGGAC	2 cut(s)	23, 85
BslI	CCNNNNNNNGG	3 cut(s)	17, 47, 239
BsmAI	GTCTC	2 cut(s)	131, 239
BsmFI	GGGAC	2 cut(s)	23, 85
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	51, 198, 222
BspACI	CCGC	2 cut(s)	264, 275
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	46, 59
BsrBI	CCGCTC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	3 cut(s)	51, 198, 222
Bst2UI	CCWGG	2 cut(s)	68, 192
Bst4CI	ACNGT	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	234
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	3 cut(s)	54, 201, 225
BstMAI	GTCTC	2 cut(s)	131, 239
BstMBI	GATC	3 cut(s)	51, 198, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	68, 192
BstSCI	CCNGG	3 cut(s)	39, 66, 190
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	2 cut(s)	51, 222
BstYI	RGATCY	2 cut(s)	51, 222
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	89
CviJI	RGCY	4 cut(s)	10, 32, 66, 263
CviKI_1	RGCY	4 cut(s)	10, 32, 66, 263
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	53, 200, 224
DpnII	GATC	3 cut(s)	51, 198, 222
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	66, 190
FaiI	YATR	5 cut(s)	107, 171, 188, 207, 219
FaqI	GGGAC	2 cut(s)	23, 85
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	8, 264
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	8, 264
GluI	GCNGC	2 cut(s)	8, 264
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	3 cut(s)	41, 174, 270
HinfI	GANTC	3 cut(s)	44, 124, 139
HpaII	CCGG	3 cut(s)	41, 174, 270
HphI	GGTGA	2 cut(s)	108, 134
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	130, 270
Hpy8I	GTNNAC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	234
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	51, 198, 222
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	9 cut(s)	33, 53, 54, 77, 80, 177, 187, 195, 204
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	53, 200, 224
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	3 cut(s)	51, 198, 222
MboII	GAAGA	1 cut(s)	112
MflI	RGATCY	2 cut(s)	51, 222
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	1 cut(s)	168
MroI	TCCGGA	1 cut(s)	269
MseI	TTAA	2 cut(s)	62, 135
MslI	CAYNNNNRTG	2 cut(s)	150, 152
MspI	CCGG	3 cut(s)	41, 174, 270
MspR9I	CCNGG	3 cut(s)	41, 68, 192
MvaI	CCWGG	2 cut(s)	68, 192
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	3 cut(s)	51, 198, 222
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	44, 139
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	9, 265
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	66, 190
PspGI	CCWGG	2 cut(s)	66, 190
PspN4I	GGNNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	51, 222
RseI	CAYNNNNRTG	2 cut(s)	150, 152
SaqAI	TTAA	2 cut(s)	62, 135
SatI	GCNGC	2 cut(s)	8, 264
Sau3AI	GATC	3 cut(s)	51, 198, 222
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	3 cut(s)	41, 68, 192
SetI	ASST	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	150, 152
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	264, 275
StyD4I	CCNGG	3 cut(s)	39, 66, 190
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	15
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	44, 139
Tru1I	TTAA	2 cut(s)	62, 135
Tru9I	TTAA	2 cut(s)	62, 135
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	85
TspRI	CASTG	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.