Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

29083350 .. 29085922

Gene Structure 2573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1211900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTCAAGAAGTTTTCTACTGAAGAGGTGTCTGCACAAAATCAAGTTAAGGCATCTGTCCAGCGCAAAATTCGGCAGAGTATTGCAGATGAGTACCCGGGACTCGAACAGGTGTTGGAAGATTTGATCCCAAAGAAATCTCCTCTTATTGTGGCTAAATGTCAGAACCATCTAAATCTGGTGGTGGTAAACAACGTGCCACTATTTTTCAACATTCGTGATGGACCGTATATGCCTACCCTAAGACTTCTTCATCAATATCCAGACATAATGAAAAAGTTGCAAGTAGATAGGGGCGCCATAAGGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCAGGTCTAACTTCTCCCGGTGGTTCTTTGGATGATGAAGTGGGTGCAGAAACTCCCGTGGCAATAATGGCAGAAGGAAAACAACATGCTCTTGCTATTGGCTTCACAAAAATGTCAGCAAAAGAAATAAGAGATATCAACAAGGGAATCGGAGTTGACAACATGCATTATCTTAACGATGGTCTTTGGAAGATGGAACATCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

182

Amino Acids

20.17

Weight (kDa)

6.97

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA	PF17832	7 - 88	4.7e-29	Pre-PUA-like domain
PUA	PF01472	92 - 170	1.8e-17	PUA domain
PUA_elF2D	PF26292	100 - 172	1.8e-12	elF2D, PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	7, 211
AjnI	CCWGG	1 cut(s)	337
AlwI	GGATC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	66, 299
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	3 cut(s)	98, 99, 354
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	296
BccI	CCATC	4 cut(s)	177, 215, 509, 523
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	3 cut(s)	98, 99, 354
BfaI	CTAG	1 cut(s)	539
BfoI	RGCGCY	1 cut(s)	300
Bme1390I	CCNGG	4 cut(s)	98, 99, 339, 354
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	4 cut(s)	98, 99, 339, 354
BmsI	GCATC	1 cut(s)	62
BpuMI	CCSGG	3 cut(s)	98, 99, 354
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	97, 393
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	97, 393
BseGI	GGATG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	132
BsgI	GTGCAG	2 cut(s)	18, 402
BshNI	GGYRCC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	98, 354
BslFI	GGGAC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	97, 393
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	66, 299
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	425, 502
BstSCI	CCNGG	4 cut(s)	96, 97, 337, 352
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	373
CfoI	GCGC	2 cut(s)	66, 299
Cfr13I	GGNCC	1 cut(s)	224
Cfr9I	CCCGGG	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	422, 499
CviJI	RGCY	2 cut(s)	155, 438
CviKI_1	RGCY	2 cut(s)	155, 438
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	242
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	504
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
FaeI	CATG	2 cut(s)	425, 502
FaiI	YATR	7 cut(s)	231, 233, 269, 302, 329, 423, 500
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	421, 498
FokI	GGATG	1 cut(s)	380
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	2 cut(s)	65, 298
HaeII	RGCGCY	1 cut(s)	300
HapII	CCGG	2 cut(s)	98, 354
HhaI	GCGC	2 cut(s)	66, 299
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	425, 502
Hin6I	GCGC	2 cut(s)	64, 297
HinP1I	GCGC	2 cut(s)	64, 297
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	102, 483
HpaII	CCGG	2 cut(s)	98, 354
Hpy166II	GTNNAC	2 cut(s)	190, 493
Hpy188I	TCNGA	2 cut(s)	165, 488
Hpy188III	TCNNGA	4 cut(s)	7, 218, 263, 539
Hpy8I	GTNNAC	2 cut(s)	190, 493
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	35, 86, 283, 323, 383, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	425, 502
HspAI	GCGC	2 cut(s)	64, 297
KasI	GGCGCC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	9 cut(s)	74, 95, 111, 164, 276, 303, 324, 351, 367
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	195
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	4 cut(s)	35, 131, 242, 538
MluCI	AATT	1 cut(s)	69
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	19, 153
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	2 cut(s)	48, 510
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	2 cut(s)	98, 354
MspR9I	CCNGG	4 cut(s)	98, 99, 339, 354
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	404
NarI	GGCGCC	1 cut(s)	297
NciI	CCSGG	3 cut(s)	98, 99, 354
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	2 cut(s)	425, 502
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	2 cut(s)	425, 502
PfeI	GAWTC	1 cut(s)	483
PleI	GAGTC	1 cut(s)	96
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	48, 510
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	4 cut(s)	98, 99, 339, 354
SetI	ASST	5 cut(s)	30, 114, 198, 308, 343
SfaNI	GCATC	1 cut(s)	62
SfoI	GGCGCC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	224
SmaI	CCCGGG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	69
SspDI	GGCGCC	1 cut(s)	296
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	4 cut(s)	96, 97, 337, 352
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	48, 510
Tru9I	TTAA	2 cut(s)	48, 510
TspDTI	ATGAA	3 cut(s)	242, 287, 387
TspMI	CCCGGG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	538
XceI	RCATGY	2 cut(s)	425, 502
XmaI	CCCGGG	1 cut(s)	97
XspI	CTAG	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.