Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Reverse (-)

177092 .. 180165

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000279.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgttcaaaaaattttcttctgaagaggtgtcagcacaaaaccaagtgaaggcgtctgtccagcgcaaaattcgacaaagtattgcagaagagtaccctggactggaacaagtgttggatgatctgcttccaaagaaatctcctctcattgttgctaaatgtcaaaaccatctaaacttggtggtggtaaacagcgtgccactatttttcaacatacgtgatggaccatatatgcctactctcagactgcttcatcaatatccagatataatgaaaaaattacaagtagataggggtgccataaagtttgttcttgctggtgcaaacataatgtgtcctggtttaacttctcctggtggtgctttggatgacgaagtggctgcagaaactcccgtggcaataatggcagaaggaaagcagcatgcacttgctattggcttcacaaaaatgtcagcaaaagaaattaaacagatcaacaagggaattggagttgacaacatgcattatcttaatgatggtctttggaagatggaacatttagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

181

Amino Acids

20.07

Weight (kDa)

7.77

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AcsI	RAATTY	2 cut(s)	11, 69
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	49, 103
AgsI	TTSAA	2 cut(s)	7, 211
AjnI	CCWGG	3 cut(s)	97, 337, 352
ApeKI	GCWGC	2 cut(s)	380, 418
ApoI	RAATTY	2 cut(s)	11, 69
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	367, 430
BccI	CCATC	4 cut(s)	177, 215, 509, 523
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	3 cut(s)	99, 339, 354
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	381, 419
BlsI	GCNGC	2 cut(s)	382, 420
Bme1390I	CCNGG	3 cut(s)	99, 339, 354
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	3 cut(s)	99, 339, 354
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	97, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 103
Bse1I	ACTGG	1 cut(s)	108
BseBI	CCWGG	3 cut(s)	99, 339, 354
BseDI	CCNNGG	2 cut(s)	97, 393
BseGI	GGATG	2 cut(s)	124, 373
BseLI	CCNNNNNNNGG	2 cut(s)	49, 103
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	367, 430
BshNI	GGYRCC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	49, 103
Bsp143I	GATC	2 cut(s)	121, 471
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	97, 393
BssMI	GATC	2 cut(s)	121, 471
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	3 cut(s)	99, 339, 354
Bst6I	CTCTTC	2 cut(s)	18, 84
BstACI	GRCGYC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	197, 423
BstDEI	CTNAG	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	124, 373
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	124, 474
BstMBI	GATC	2 cut(s)	121, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	3 cut(s)	99, 339, 354
BstNSI	RCATGY	2 cut(s)	425, 502
BstSCI	CCNGG	3 cut(s)	97, 337, 352
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	367, 430
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	124, 373
Cac8I	GCNNGC	2 cut(s)	197, 423
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	422, 499
CviJI	RGCY	2 cut(s)	380, 438
CviKI_1	RGCY	2 cut(s)	380, 438
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	123, 473
DpnII	GATC	2 cut(s)	121, 471
Eam1104I	CTCTTC	2 cut(s)	18, 84
EarI	CTCTTC	2 cut(s)	18, 84
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	42
EcoRII	CCWGG	3 cut(s)	97, 337, 352
EcoT22I	ATGCAT	1 cut(s)	504
FaeI	CATG	2 cut(s)	425, 502
FaiI	YATR	9 cut(s)	215, 229, 231, 233, 269, 302, 329, 423, 500
FatI	CATG	2 cut(s)	421, 498
Fnu4HI	GCNGC	2 cut(s)	381, 419
FokI	GGATG	2 cut(s)	131, 380
Fsp4HI	GCNGC	2 cut(s)	381, 419
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	2 cut(s)	381, 419
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	425, 502
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	190, 493
Hpy188I	TCNGA	2 cut(s)	22, 245
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	190, 493
HpyAV	CCTTC	2 cut(s)	43, 404
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	5 cut(s)	86, 323, 383, 425, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	425, 502
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	121, 471
Lsp1109I	GCAGC	2 cut(s)	367, 430
MaeII	ACGT	1 cut(s)	217
MalI	GATC	2 cut(s)	123, 473
MboI	GATC	2 cut(s)	121, 471
MboII	GAAGA	4 cut(s)	9, 35, 101, 538
MluCI	AATT	5 cut(s)	11, 69, 278, 462, 483
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	19, 153
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	3 cut(s)	344, 465, 510
MslI	CAYNNNNRTG	1 cut(s)	446
MspR9I	CCNGG	3 cut(s)	99, 339, 354
MvaI	CCWGG	3 cut(s)	99, 339, 354
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	2 cut(s)	121, 471
NlaIII	CATG	2 cut(s)	425, 502
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	2 cut(s)	425, 502
PaeI	GCATGC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	382, 420
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	3 cut(s)	97, 337, 352
PspGI	CCWGG	3 cut(s)	97, 337, 352
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	344, 465, 510
SatI	GCNGC	2 cut(s)	381, 419
Sau3AI	GATC	2 cut(s)	121, 471
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	99, 339, 354
SetI	ASST	2 cut(s)	30, 220
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	5 cut(s)	11, 69, 278, 462, 483
StyD4I	CCNGG	3 cut(s)	97, 337, 352
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	73
TasI	AATT	5 cut(s)	11, 69, 278, 462, 483
Tru1I	TTAA	3 cut(s)	344, 465, 510
Tru9I	TTAA	3 cut(s)	344, 465, 510
TseI	GCWGC	2 cut(s)	380, 418
TspDTI	ATGAA	2 cut(s)	242, 287
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	11, 69
XceI	RCATGY	2 cut(s)	425, 502
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.