Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

4046416 .. 4050239

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTCAAAAAATTTTCAACTGAAGAGGTATCGGCACAAAACCAAGTAAAGGCATCTGTCCAGCGTAAAATTCGACAAAGTATTGCAGAAGAGTACCCTGGACTGGAACAAGTGTTGGATGATTTGCTTCCAAAGAAATCTCCTCTCATTGTTGCTAAATGGTTTGACTCTGTTGTTCCTGCTAATACGCAAATAAGAATGAGCCCTACTCTGAGGAAGCAGTTCTTGTGCTTGGAAGAATCCATTCAACAACATGCTGATCCAGATATAATGAAAAAGTTACAAGTAGATAGGGGTGCCATAAAGTTTGTTCTTGCTGGTGCAAACATAATGTGTCCAGGTTTAACTTCTCCTGGTGGTGCTTTGGATGACGAAGTTGCTGCAGAAACTCCTGTGGCAATAATGGCAGAAGGAAAGCAGCATGCCCTTGCTATTGGCTTCACAAAAATGTCAGCAAAAGAAATTAAGCTGATCAACAAGGGAATTGGAGTTGACAACATGCATTATCTTAATGACGGTCTTTGGAAGATATTTCCTTTGGTAGAATCAGTGAGGCATTGTCATGCCAAAACATTTGTTCCTTATAATGATGGAACATCTAGATTGAGGATATTGGCGATTAACTGTGCTTATCATCAGGAAGAAATGAAGAATCTTATGTTTATCTATTTCATAAGTGTTCGTCTTCTGAGTATCATAACCCAGCTTAAAGAGTTACGTACCCTTTCCCTGTCAATTGGCCTTATCTTTGAAACCATACGACTGCCATTGGAGAAATTTTCCAACGCTCTCAGAGAACCACGTGACATTGCCCGGTGGTTCTCTTTACCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

279

Amino Acids

31.38

Weight (kDa)

8.95

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA	PF17832	7 - 54	6.6e-12	Pre-PUA-like domain
PUA	PF01472	92 - 170	1.4e-16	PUA domain
PUA_elF2D	PF26292	99 - 172	6.1e-12	elF2D, PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	3 cut(s)	11, 69, 776
AcuI	CTGAAG	1 cut(s)	42
AcvI	CACGTG	1 cut(s)	803
AfaI	GTAC	2 cut(s)	95, 721
AfiI	CCNNNNNNNGG	2 cut(s)	49, 103
AgsI	TTSAA	4 cut(s)	7, 18, 248, 752
AjnI	CCWGG	3 cut(s)	97, 337, 352
AluBI	AGCT	2 cut(s)	469, 706
AluI	AGCT	2 cut(s)	469, 706
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	739
ApeKI	GCWGC	2 cut(s)	380, 418
ApoI	RAATTY	3 cut(s)	11, 69, 776
Asp700I	GAANNNNTTC	2 cut(s)	221, 243
AsuC2I	CCSGG	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	677
BbvI	GCAGC	2 cut(s)	367, 430
BccI	CCATC	1 cut(s)	584
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	3 cut(s)	99, 339, 354
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	814
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	381, 419
BlsI	GCNGC	2 cut(s)	382, 420
Bme1390I	CCNGG	4 cut(s)	99, 339, 354, 814
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	4 cut(s)	99, 339, 354, 814
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	677
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpuMI	CCSGG	1 cut(s)	814
BsaAI	YACGTR	2 cut(s)	719, 803
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 103
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	3 cut(s)	99, 339, 354
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	124, 373
BseLI	CCNNNNNNNGG	2 cut(s)	49, 103
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	3 cut(s)	203, 680, 805
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	367, 430
BseYI	CCCAGC	1 cut(s)	702
BshFI	GGCC	1 cut(s)	741
BshNI	GGYRCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	814
BslI	CCNNNNNNNGG	2 cut(s)	49, 103
BsnI	GGCC	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	259, 471
BspANI	GGCC	1 cut(s)	741
BspCNI	CTCAG	3 cut(s)	204, 681, 804
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	259, 471
Bst2UI	CCWGG	3 cut(s)	99, 339, 354
Bst4CI	ACNGT	2 cut(s)	518, 626
Bst6I	CTCTTC	2 cut(s)	18, 84
BstBAI	YACGTR	2 cut(s)	719, 803
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	212, 689, 791
BstF5I	GGATG	2 cut(s)	124, 373
BstKTI	GATC	2 cut(s)	262, 474
BstMBI	GATC	2 cut(s)	259, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	3 cut(s)	99, 339, 354
BstNSI	RCATGY	3 cut(s)	257, 425, 502
BstSCI	CCNGG	4 cut(s)	97, 337, 352, 812
BstSFI	CTRYAG	1 cut(s)	381
BstSNI	TACGTA	1 cut(s)	719
BstV1I	GCAGC	2 cut(s)	367, 430
BstV2I	GAAGAC	1 cut(s)	677
BsuRI	GGCC	1 cut(s)	741
BtsCI	GGATG	2 cut(s)	124, 373
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	94, 720
CviAII	CATG	4 cut(s)	254, 422, 499, 563
CviJI	RGCY	5 cut(s)	204, 438, 469, 706, 741
CviKI_1	RGCY	5 cut(s)	204, 438, 469, 706, 741
CviQI	GTAC	2 cut(s)	94, 720
DdeI	CTNAG	3 cut(s)	212, 689, 791
DpnI	GATC	2 cut(s)	261, 473
DpnII	GATC	2 cut(s)	259, 471
Eam1104I	CTCTTC	2 cut(s)	18, 84
EarI	CTCTTC	2 cut(s)	18, 84
Eco105I	TACGTA	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	42
Eco72I	CACGTG	1 cut(s)	803
EcoRII	CCWGG	3 cut(s)	97, 337, 352
EcoT22I	ATGCAT	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	4 cut(s)	257, 425, 502, 566
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	4 cut(s)	253, 421, 498, 562
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	381, 419
FokI	GGATG	2 cut(s)	131, 380
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	381, 419
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	381, 419
GsaI	CCCAGC	1 cut(s)	706
HaeIII	GGCC	1 cut(s)	741
HapII	CCGG	1 cut(s)	814
Hin1II	CATG	4 cut(s)	257, 425, 502, 566
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	4 cut(s)	167, 239, 545, 652
HpaII	CCGG	1 cut(s)	814
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	3 cut(s)	213, 690, 794
Hpy188III	TCNNGA	3 cut(s)	263, 600, 638
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	518, 626
HpyCH4IV	ACGT	2 cut(s)	718, 802
HpyCH4V	TGCA	4 cut(s)	86, 323, 383, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	3 cut(s)	212, 689, 791
HpySE526I	ACGT	2 cut(s)	718, 802
Hsp92II	CATG	4 cut(s)	257, 425, 502, 566
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	259, 471
Lsp1109I	GCAGC	2 cut(s)	367, 430
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	718, 802
MaeIII	GTNAC	3 cut(s)	279, 714, 803
MalI	GATC	2 cut(s)	261, 473
MboI	GATC	2 cut(s)	259, 471
MboII	GAAGA	7 cut(s)	35, 101, 248, 538, 653, 661, 677
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	6 cut(s)	11, 69, 462, 483, 735, 776
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	96, 807
MnlI	CCTC	5 cut(s)	19, 153, 207, 546, 600
Mph1103I	ATGCAT	1 cut(s)	504
MroXI	GAANNNNTTC	2 cut(s)	221, 243
MseI	TTAA	5 cut(s)	344, 465, 510, 621, 708
MslI	CAYNNNNRTG	2 cut(s)	446, 561
MspI	CCGG	1 cut(s)	814
MspR9I	CCNGG	4 cut(s)	99, 339, 354, 814
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	3 cut(s)	99, 339, 354
MwoI	GCNNNNNNNGC	1 cut(s)	404
NciI	CCSGG	1 cut(s)	814
NdeII	GATC	2 cut(s)	259, 471
NlaIII	CATG	4 cut(s)	257, 425, 502, 566
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	3 cut(s)	257, 425, 502
PaeI	GCATGC	1 cut(s)	425
PdmI	GAANNNNTTC	2 cut(s)	221, 243
PfeI	GAWTC	3 cut(s)	239, 545, 652
PkrI	GCNGC	2 cut(s)	382, 420
PleI	GAGTC	1 cut(s)	161
PmaCI	CACGTG	1 cut(s)	803
PmlI	CACGTG	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	161
Ppu21I	YACGTR	2 cut(s)	719, 803
PsiI	TTATAA	1 cut(s)	585
Psp6I	CCWGG	3 cut(s)	97, 337, 352
PspCI	CACGTG	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	702
PspGI	CCWGG	3 cut(s)	97, 337, 352
PspN4I	GGNNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	95, 721
RsaNI	GTAC	2 cut(s)	94, 720
RseI	CAYNNNNRTG	2 cut(s)	446, 561
SaqAI	TTAA	5 cut(s)	344, 465, 510, 621, 708
SatI	GCNGC	2 cut(s)	381, 419
Sau3AI	GATC	2 cut(s)	259, 471
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	4 cut(s)	99, 339, 354, 814
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	7 cut(s)	30, 343, 471, 708, 721, 805, 832
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	446, 561
SnaBI	TACGTA	1 cut(s)	719
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	6 cut(s)	11, 69, 462, 483, 735, 776
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	97, 337, 352, 812
TaaI	ACNGT	2 cut(s)	518, 626
TaiI	ACGT	2 cut(s)	721, 805
TaqI	TCGA	1 cut(s)	73
TasI	AATT	6 cut(s)	11, 69, 462, 483, 735, 776
TfiI	GAWTC	3 cut(s)	239, 545, 652
Tru1I	TTAA	5 cut(s)	344, 465, 510, 621, 708
Tru9I	TTAA	5 cut(s)	344, 465, 510, 621, 708
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	2 cut(s)	380, 418
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	3 cut(s)	287, 661, 662
TspRI	CASTG	1 cut(s)	555
XapI	RAATTY	3 cut(s)	11, 69, 776
XbaI	TCTAGA	1 cut(s)	599
XceI	RCATGY	3 cut(s)	257, 425, 502
XmnI	GAANNNNTTC	2 cut(s)	221, 243
XspI	CTAG	1 cut(s)	600
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.