Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008309

Physical Location & Seq

Genomic Coordinates Forward (+)

2984829 .. 2986231

Gene Structure 1403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTTGCCAAGACGAACAATTGGTGCAAACAATATGCGATCTCTACGAAAAGATCTCAAAGCTTGAGAGTCTAAAACCATCCGAAGATGTCAACATTCTCTTCAAGCAGCTCGTTTCCACATGCATACCACCAAACCCTAACATCGATGTCACCAAGATGTGTGACAGAGTCCAAGAGATTCGACTTAATCTCATCAAGATTTGTGGTCTAGCCGAAGGTCACTTAGAAAACCATTTCTCTTCGATCTTGACCTCTTACCAAGACAACCCACTTCATCATTTAAACATTTTCCCTTATTACAACAACTATTTGAAACTCGGAAAGCTCGAGTTCGACCTCCTCGAACAAAACCTAAATGGCTTTGTCCCAAAGAGTGTGGCTTTCATTGGATCTGGTCCTCTTCCTCTCACTTCCATCGTTCTTGCTTCATTCCATCTCAAAGACACAATCTTTCACAACTTTGACATCGACCCATCAGCGAACTCACTCGCTTCTCTTCTGGTTTCCTCTGATCCAGACATCTCTCAACGCATGTTCTTCCACACCGTTGATATAATGGACGTGACAGAGAGCTTAAAGAGCTTTGATGTCGTGTTTCTAGCTGCTCTTGTTGGAATGAACAAAGAGGAGAAAGTTAAAGTGATCGAGCATCTGCAGAAACACATGGCTCCTGGTGCTGTGCTCATGCTTAGGAGTGCTCATGGTCCGAGAGCGTTTCTTTATCCGATCGTTGAGCCGTGTGATCTTCAGGGGTTCGAGGTTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTGGTGATCTCTAAAAAGCATCCAGTTGTTTCAATTGGGAATGTTGGTGGTCCTAATTCATGCTTGCTCAAGCCTTGCAACTGTTCCAAGACCCACGCGAAAATGAACAAGAACATGATGATCGAGGAGTTCGGAGCTAGGGAGGAACAGTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010232 GO:0010233 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

320

Amino Acids

35.75

Weight (kDa)

5.69

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAS	PF03059	5 - 278	2e-133	Nicotianamine synthase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09240 AT1G56430 AT5G04950 AT5G56080
fragaria_vesca	FvH4_4g09260
malus_domestica	MD13G1268200.v1.1 MD13G1268300.v1.1
prunus_persica	Prupe.1G088200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402811 RchiOBHm_Chr7g0220311
rosa_laevigata	RLG00000002237
rosa_multiflora	Rmu_co8364683.1_g000001 Rmu_sc0001136.1_g000077 Rmu_sc0001565.1_g000052 Rmu_sc0008058.1_g000003
rosa_roxburghii	Rroxscaffold_3G00239630
rosa_rugosa	Rorug07G0192700
rosa_samantha	Rh4DG109000 Rh7AG334000 Rh7BG324900 Rh7CG351700 Rh7DG330700
rosa_wichuraiana	Rw7G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	902
AclWI	GGATC	2 cut(s)	400, 509
AcuI	CTGAAG	1 cut(s)	734
AgsI	TTSAA	3 cut(s)	106, 316, 837
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	7 cut(s)	64, 112, 328, 576, 585, 605, 941
AluI	AGCT	7 cut(s)	64, 112, 328, 576, 585, 605, 941
Alw21I	GWGCWC	2 cut(s)	687, 703
AlwI	GGATC	2 cut(s)	400, 509
Ama87I	CYCGRG	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	109, 605
AspS9I	GGNCC	3 cut(s)	398, 707, 854
AsuHPI	GGTGA	3 cut(s)	145, 770, 820
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	3 cut(s)	398, 707, 854
Bbv12I	GWGCWC	2 cut(s)	687, 703
BbvI	GCAGC	2 cut(s)	121, 592
BccI	CCATC	4 cut(s)	88, 425, 444, 484
BceAI	ACGGC	1 cut(s)	724
BciT130I	CCWGG	1 cut(s)	675
BfaI	CTAG	3 cut(s)	212, 602, 942
BfmI	CTRYAG	1 cut(s)	656
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	2 cut(s)	110, 606
BlsI	GCNGC	2 cut(s)	111, 607
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	3 cut(s)	398, 707, 854
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	3 cut(s)	398, 707, 854
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	661, 832
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	2 cut(s)	86, 857
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	804
BsaXI	ACNNNNNCTCC	1 cut(s)	938
Bse1I	ACTGG	1 cut(s)	827
BseBI	CCWGG	1 cut(s)	675
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	804
BseGI	GGATG	2 cut(s)	80, 823
BseNI	ACTGG	1 cut(s)	827
BseRI	GAGGAG	3 cut(s)	332, 644, 944
BseXI	GCAGC	2 cut(s)	121, 592
Bsh1236I	CGCG	1 cut(s)	902
Bsh1285I	CGRYCG	1 cut(s)	732
BshVI	ATCGAT	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	687, 703
BsiHKCI	CYCGRG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	687, 703
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	902
BspLI	GGNNCC	1 cut(s)	672
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	2 cut(s)	400, 509
BsrI	ACTGG	1 cut(s)	827
BssECI	CCNNGG	1 cut(s)	804
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	3 cut(s)	550, 887, 954
Bst6I	CTCTTC	4 cut(s)	107, 247, 408, 504
BstC8I	GCNNGC	1 cut(s)	869
BstDEI	CTNAG	2 cut(s)	226, 692
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	2 cut(s)	80, 823
BstFNI	CGCG	1 cut(s)	902
BstMCI	CGRYCG	1 cut(s)	732
BstMWI	GCNNNNNNNGC	2 cut(s)	582, 677
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	2 cut(s)	126, 538
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	656
BstUI	CGCG	1 cut(s)	902
BstV1I	GCAGC	2 cut(s)	121, 592
BstX2I	RGATCY	2 cut(s)	54, 392
BstYI	RGATCY	2 cut(s)	54, 392
Bsu15I	ATCGAT	1 cut(s)	147
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	80, 823
Cac8I	GCNNGC	1 cut(s)	869
Cfr13I	GGNCC	3 cut(s)	398, 707, 854
ClaI	ATCGAT	1 cut(s)	147
CspCI	CAANNNNNGTGG	4 cut(s)	187, 222, 360, 395
CviAII	CATG	7 cut(s)	123, 535, 667, 688, 704, 864, 919
DdeI	CTNAG	2 cut(s)	226, 692
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	4 cut(s)	107, 247, 408, 504
EarI	CTCTTC	4 cut(s)	107, 247, 408, 504
Eco47I	GGWCC	3 cut(s)	398, 707, 854
Eco57I	CTGAAG	1 cut(s)	734
Eco88I	CYCGRG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	673
EcoT22I	ATGCAT	1 cut(s)	128
FaeI	CATG	7 cut(s)	126, 538, 670, 691, 707, 867, 922
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	7 cut(s)	122, 534, 666, 687, 703, 863, 918
Fnu4HI	GCNGC	2 cut(s)	110, 606
FokI	GGATG	2 cut(s)	67, 810
Fsp4HI	GCNGC	2 cut(s)	110, 606
FspBI	CTAG	3 cut(s)	212, 602, 942
GluI	GCNGC	2 cut(s)	110, 606
Hin1II	CATG	7 cut(s)	126, 538, 670, 691, 707, 867, 922
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	70, 171, 181
HphI	GGTGA	3 cut(s)	145, 770, 820
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	6 cut(s)	85, 323, 514, 711, 729, 938
Hpy188III	TCNNGA	3 cut(s)	199, 250, 518
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	550, 887, 954
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	4 cut(s)	28, 126, 658, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	582, 677
HpyF3I	CTNAG	2 cut(s)	226, 692
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	7 cut(s)	126, 538, 670, 691, 707, 867, 922
LmnI	GCTCC	2 cut(s)	676, 938
LpnPI	CCDG	7 cut(s)	381, 488, 531, 660, 687, 737, 840
Lsp1109I	GCAGC	2 cut(s)	121, 592
LweI	GCATC	2 cut(s)	661, 832
MaeI	CTAG	3 cut(s)	212, 602, 942
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	4 cut(s)	151, 164, 221, 565
MboII	GAAGA	7 cut(s)	94, 98, 234, 395, 491, 532, 740
MfeI	CAATTG	2 cut(s)	20, 837
MflI	RGATCY	2 cut(s)	54, 392
MhlI	GDGCHC	2 cut(s)	687, 703
MluCI	AATT	3 cut(s)	20, 837, 859
MlyI	GAGTC	2 cut(s)	79, 180
MmeI	TCCRAC	1 cut(s)	595
Mph1103I	ATGCAT	1 cut(s)	128
MseI	TTAA	5 cut(s)	189, 284, 578, 639, 961
MslI	CAYNNNNRTG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	675
MunI	CAATTG	2 cut(s)	20, 837
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	902
MwoI	GCNNNNNNNGC	2 cut(s)	582, 677
NlaIII	CATG	7 cut(s)	126, 538, 670, 691, 707, 867, 922
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	4 cut(s)	151, 164, 221, 565
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	2 cut(s)	126, 538
PaeR7I	CTCGAG	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 342
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	111, 607
Ple19I	CGATCG	1 cut(s)	732
PleI	GAGTC	2 cut(s)	78, 179
PpsI	GAGTC	2 cut(s)	78, 179
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	3 cut(s)	398, 707, 854
PspXI	VCTCGAGB	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	54, 392
PsyI	GACNNNGTC	1 cut(s)	170
PvuI	CGATCG	1 cut(s)	732
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	5 cut(s)	189, 284, 578, 639, 961
SatI	GCNGC	2 cut(s)	110, 606
Sau96I	GGNCC	3 cut(s)	398, 707, 854
SchI	GAGTC	2 cut(s)	79, 180
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	2 cut(s)	687, 703
SfaNI	GCATC	2 cut(s)	661, 832
SfcI	CTRYAG	1 cut(s)	656
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	3 cut(s)	398, 707, 854
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	3 cut(s)	65, 329, 872
SmoI	CTYRAG	3 cut(s)	65, 329, 872
Sse9I	AATT	3 cut(s)	20, 837, 859
SspMI	CTAG	3 cut(s)	212, 602, 942
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	3 cut(s)	550, 887, 954
TaiI	ACGT	1 cut(s)	567
TasI	AATT	3 cut(s)	20, 837, 859
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	5 cut(s)	189, 284, 578, 639, 961
Tru9I	TTAA	5 cut(s)	189, 284, 578, 639, 961
TseFI	GTSAC	4 cut(s)	151, 164, 221, 565
TseI	GCWGC	2 cut(s)	109, 605
Tsp45I	GTSAC	4 cut(s)	151, 164, 221, 565
TspDTI	ATGAA	6 cut(s)	266, 376, 420, 635, 852, 923
TspGWI	ACGGA	1 cut(s)	793
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	3 cut(s)	398, 707, 854
XceI	RCATGY	2 cut(s)	126, 538
XhoI	CTCGAG	1 cut(s)	329
XspI	CTAG	3 cut(s)	212, 602, 942
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.