Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008309

Physical Location & Seq

Genomic Coordinates Reverse (-)

22711141 .. 22712441

Gene Structure 1301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATGGACTTATACAACCAAATCTCAAACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCAGACAACTTGTGTCCACGTGCTTACCAACGGACACGAACATCGATGTCACAGAGATACACGATGAAAAAGTCAAAGACATGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACACTTTTCAGCAATCTTAGGCTCTTTTGAAGACAACCCTCTAAACCATTTACACATCTTCCCCTATTACAACAACTATCTCAAACTAGGCAAACTCGAATTCGATCTCCTATCTCAACACACAACCCATGTCCCGACCAAAGTCGCCTTTATTGGTTCCGGTCCGATGCCACTTACTTCCATCGTCTTGGCCAAGTTCCACCTCCCCAACACAACGTTCCACAACTTCGACATCGACTCACACGCCAACACACTCGCTTCAAACCTCGTTTCTCGTGATTCTGACCTTTCCAAACGCATGATTTTCCACACAACTGATGTATTAAACGCTAAGGAGGGGTTAGACCAATACGATGTTGTTTTCTTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGAGCATTTAGAGAAGCATATGGCTCCTGGAGCTGTGGTGATGCTAAGAAGTGCTCATGGTCTTAGAGCTTTCTTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAACCATTTATCATCCGTCTGACGACGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGGTTCAAATGGAGCTCGAGGCAGCCAGATCGGACGGTGTGTGGTTATGCCTTGTAATTGCTCTAAGGTCCACGCGATCTTGAACAATCGTGGTATGGAGAAGAATTTGATCGAGGAGTATAGTGCCATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0000902 GO:0000904 GO:0003006 GO:0006810 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010232 GO:0010233 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0040007 GO:0042221 GO:0042493 GO:0044706 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051716 GO:0060560 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0071840 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

320

Amino Acids

35.68

Weight (kDa)

6.04

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAS	PF03059	5 - 275	2e-132	Nicotianamine synthase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09240 AT1G56430 AT5G04950 AT5G56080
fragaria_vesca	FvH4_4g09260
malus_domestica	MD13G1268200.v1.1 MD13G1268300.v1.1
prunus_persica	Prupe.1G088200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402811 RchiOBHm_Chr7g0220311
rosa_laevigata	RLG00000002237
rosa_multiflora	Rmu_co8364683.1_g000001 Rmu_sc0001136.1_g000077 Rmu_sc0001565.1_g000052 Rmu_sc0008058.1_g000003
rosa_roxburghii	Rroxscaffold_3G00239630
rosa_rugosa	Rorug07G0192700
rosa_samantha	Rh4DG109000 Rh7AG334000 Rh7BG324900 Rh7CG351700 Rh7DG330700
rosa_wichuraiana	Rw7G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	902
AclI	AACGTT	1 cut(s)	452
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	335, 931
AcvI	CACGTG	1 cut(s)	123
AgsI	TTSAA	4 cut(s)	266, 498, 834, 910
AjiI	CACGTC	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	8 cut(s)	72, 205, 608, 644, 680, 716, 823, 842
AluI	AGCT	8 cut(s)	72, 205, 608, 644, 680, 716, 823, 842
Alw21I	GWGCWC	2 cut(s)	703, 844
Ama87I	CYCGRG	2 cut(s)	65, 843
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	2 cut(s)	605, 849
ApoI	RAATTY	2 cut(s)	335, 931
AspS9I	GGNCC	2 cut(s)	398, 895
AsuHPI	GGTGA	2 cut(s)	224, 697
AvaI	CYCGRG	2 cut(s)	65, 843
AvaII	GGWCC	2 cut(s)	398, 895
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	844
BauI	CACGAG	1 cut(s)	510
BbrPI	CACGTG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	703, 844
BbvI	GCAGC	2 cut(s)	617, 861
BccI	CCATC	4 cut(s)	88, 425, 613, 962
BcgI	CGANNNNNNTGC	2 cut(s)	838, 872
BciT130I	CCWGG	1 cut(s)	675
BciVI	GTATCC	1 cut(s)	735
BfaI	CTAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	735
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	2 cut(s)	606, 850
BlsI	GCNGC	2 cut(s)	607, 851
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	2 cut(s)	398, 895
BmeT110I	CYCGRG	2 cut(s)	65, 843
BmgBI	CACGTC	1 cut(s)	793
BmgT120I	GGNCC	2 cut(s)	398, 895
BmiI	GGNNCC	2 cut(s)	394, 672
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	393, 678
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	147
BsaAI	YACGTR	2 cut(s)	123, 818
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
BseBI	CCWGG	1 cut(s)	675
BseCI	ATCGAT	1 cut(s)	147
BseGI	GGATG	3 cut(s)	80, 624, 778
BseRI	GAGGAG	1 cut(s)	956
BseXI	GCAGC	2 cut(s)	617, 861
Bsh1236I	CGCG	1 cut(s)	902
BshFI	GGCC	1 cut(s)	428
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	703, 844
BsiHKCI	CYCGRG	2 cut(s)	65, 843
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	2 cut(s)	65, 843
Bsp1286I	GDGCHC	2 cut(s)	703, 844
Bsp143I	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
BspANI	GGCC	1 cut(s)	428
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	902
BspLI	GGNNCC	2 cut(s)	394, 672
BssMI	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
BssSI	CACGAG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	864
BstBAI	YACGTR	2 cut(s)	123, 818
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	5 cut(s)	253, 567, 692, 710, 891
BstF5I	GGATG	3 cut(s)	80, 624, 778
BstFNI	CGCG	1 cut(s)	902
BstKTI	GATC	6 cut(s)	191, 343, 748, 858, 906, 939
BstMBI	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	1 cut(s)	675
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	673
BstUI	CGCG	1 cut(s)	902
BstV1I	GCAGC	2 cut(s)	617, 861
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	188
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	1 cut(s)	428
BsuTUI	ATCGAT	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	796
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	80, 624, 778
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	398, 895
ClaI	ATCGAT	1 cut(s)	147
CpoI	CGGWCCG	1 cut(s)	398
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CspI	CGGWCCG	1 cut(s)	398
CviAII	CATG	5 cut(s)	37, 184, 365, 535, 704
DdeI	CTNAG	5 cut(s)	253, 567, 692, 710, 891
DpnI	GATC	6 cut(s)	190, 342, 747, 857, 905, 938
DpnII	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
EaeI	YGGCCR	1 cut(s)	426
Ecl136II	GAGCTC	1 cut(s)	842
Eco24I	GRGCYC	1 cut(s)	844
Eco47I	GGWCC	2 cut(s)	398, 895
Eco53kI	GAGCTC	1 cut(s)	842
Eco72I	CACGTG	1 cut(s)	123
Eco88I	CYCGRG	2 cut(s)	65, 843
EcoICRI	GAGCTC	1 cut(s)	842
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	844
FaeI	CATG	5 cut(s)	40, 187, 368, 538, 707
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	5 cut(s)	36, 183, 364, 534, 703
FauNDI	CATATG	1 cut(s)	666
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	606, 850
FokI	GGATG	3 cut(s)	67, 631, 765
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	2 cut(s)	606, 850
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	2 cut(s)	606, 850
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	5 cut(s)	40, 187, 368, 538, 707
HincII	GTYRAC	3 cut(s)	94, 736, 768
HindII	GTYRAC	3 cut(s)	94, 736, 768
HindIII	AAGCTT	2 cut(s)	203, 821
HinfI	GANTC	4 cut(s)	473, 515, 629, 737
HpaI	GTTAAC	1 cut(s)	768
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	224, 697
Hpy166II	GTNNAC	5 cut(s)	94, 120, 736, 768, 898
Hpy188I	TCNGA	5 cut(s)	107, 402, 520, 787, 860
Hpy188III	TCNNGA	4 cut(s)	67, 370, 512, 907
Hpy8I	GTNNAC	5 cut(s)	94, 120, 736, 768, 898
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	864
HpyCH4IV	ACGT	4 cut(s)	122, 452, 792, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	5 cut(s)	253, 567, 692, 710, 891
HpySE526I	ACGT	4 cut(s)	122, 452, 792, 817
Hsp92II	CATG	5 cut(s)	40, 187, 368, 538, 707
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
LmnI	GCTCC	3 cut(s)	676, 677, 839
LpnPI	CCDG	4 cut(s)	409, 660, 687, 866
Lsp1109I	GCAGC	2 cut(s)	617, 861
LweI	GCATC	2 cut(s)	393, 678
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	4 cut(s)	122, 452, 792, 817
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	6 cut(s)	190, 342, 747, 857, 905, 938
MboI	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
MboII	GAAGA	3 cut(s)	278, 286, 940
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	703, 844
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	4 cut(s)	335, 799, 883, 931
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	3 cut(s)	467, 638, 731
MnlI	CCTC	9 cut(s)	29, 74, 285, 449, 512, 565, 754, 839, 934
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	5 cut(s)	74, 560, 750, 767, 798
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	902
MwoI	GCNNNNNNNGC	1 cut(s)	677
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
NlaIII	CATG	5 cut(s)	40, 187, 368, 538, 707
NlaIV	GGNNCC	2 cut(s)	394, 672
NmuCI	GTSAC	1 cut(s)	151
PaeR7I	CTCGAG	2 cut(s)	65, 843
PfeI	GAWTC	1 cut(s)	515
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	2 cut(s)	607, 851
PleI	GAGTC	3 cut(s)	467, 637, 731
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
PpsI	GAGTC	3 cut(s)	467, 637, 731
Ppu21I	YACGTR	2 cut(s)	123, 818
PshAI	GACNNNNGTC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	844
Psp1406I	AACGTT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	673
PspCI	CACGTG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	394, 672
PspPI	GGNCC	2 cut(s)	398, 895
PspXI	VCTCGAGB	1 cut(s)	843
PsuI	RGATCY	1 cut(s)	188
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	844
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	5 cut(s)	74, 560, 750, 767, 798
SatI	GCNGC	2 cut(s)	606, 850
Sau3AI	GATC	6 cut(s)	188, 340, 745, 855, 903, 936
Sau96I	GGNCC	2 cut(s)	398, 895
SchI	GAGTC	3 cut(s)	467, 638, 731
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	2 cut(s)	703, 844
SfaNI	GCATC	2 cut(s)	393, 678
Sfr274I	CTCGAG	2 cut(s)	65, 843
SinI	GGWCC	2 cut(s)	398, 895
SlaI	CTCGAG	2 cut(s)	65, 843
SmlI	CTYRAG	2 cut(s)	65, 843
SmoI	CTYRAG	2 cut(s)	65, 843
Sse9I	AATT	4 cut(s)	335, 799, 883, 931
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	844
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	1 cut(s)	864
TaiI	ACGT	4 cut(s)	125, 455, 795, 820
TasI	AATT	4 cut(s)	335, 799, 883, 931
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	5 cut(s)	74, 560, 750, 767, 798
Tru9I	TTAA	5 cut(s)	74, 560, 750, 767, 798
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	605, 849
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	2 cut(s)	149, 771
VpaK11BI	GGWCC	2 cut(s)	398, 895
XapI	RAATTY	2 cut(s)	335, 931
XhoI	CTCGAG	2 cut(s)	65, 843
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.