Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008309

Physical Location & Seq

Genomic Coordinates Reverse (-)

1457641 .. 1459039

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTTGCCAAAACAATCTCGTTGTGAAGCAAATCATCGACTTGTACGACCAAATCTCAAAGCTCAAGAGCTTAAAACCTTCCAAAAATGTCGACACTTTGTTCGGACAACTCGTGTCCACGTGCTTACCCACGGATACAAACATCGATGTCACAAATATGTGTGAAGAAGTCAAAGACATGAGAGCTAATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACACTTCTCCACAATTTTGGGATCTTTACAAGAAGACCAAAACCCACTTGACCATTTACACATCTTTCCTTACTACTCCAACTACCTCAAGCTAGGCAAGCTCGAGTTCGATCTCCTGAGCCAACACTCAAGCCATGTCCCCACCAAGATTGCCTTCGTGGGTTCGGGTCCGATGCCTCTCACATCCATCGTATTGGCCAAGTTTCACCTCCCCAACACGACGTTCCACAACTTTGACATCGACTCACACGCAAACACACTCGCTTCAAACCTCGTCTCTCGCGACCCGGACCTCTCAAAACGCATGATCTTCCACACAACGGACGTACTAAACGCAACCGAAGGCCTTGACCAATATGACGTCGTTTTCTTAGCGGCGCTTGTAGGGATGGACAAAGAGTCAAAGGTCAAAGCCATCGAGCACTTGGAGAAACACATGGCTCCTGGAGCTGTTCTTATGCTAAGGAGTGCTCATGCTCTCAGAGCTTTCTTATATCCAATCGTTGACTCGTCTGATCTCAAAGGCTTTCAACTCTTGACCATCTATCATCCAACCGATGACGTGGTTAACTCGGTTGTGATCGCACGTAAGCTCGGTGGTCCGACCACGCCCGGGGTTAATGGTACTCGTGGATGCATGTTTATGCCTTGTAACTGCTCCAAGATTCACGCGATCATGAACAACCGTGGTAAGAAGAATATGATCGAGGAGTTTAGTGCCATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0000902 GO:0000904 GO:0003006 GO:0006810 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010232 GO:0010233 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0040007 GO:0042221 GO:0042493 GO:0044706 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051716 GO:0060560 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0071840 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

320

Amino Acids

35.55

Weight (kDa)

6.15

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAS	PF03059	4 - 276	3.8e-129	Nicotianamine synthase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09240 AT1G56430 AT5G04950 AT5G56080
fragaria_vesca	FvH4_4g09260
malus_domestica	MD13G1268200.v1.1 MD13G1268300.v1.1
prunus_persica	Prupe.1G088200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402811 RchiOBHm_Chr7g0220311
rosa_laevigata	RLG00000002237
rosa_multiflora	Rmu_co8364683.1_g000001 Rmu_sc0001136.1_g000077 Rmu_sc0001565.1_g000052 Rmu_sc0008058.1_g000003
rosa_roxburghii	Rroxscaffold_3G00239630
rosa_rugosa	Rorug07G0192700
rosa_samantha	Rh4DG109000 Rh7AG334000 Rh7BG324900 Rh7CG351700 Rh7DG330700
rosa_wichuraiana	Rw7G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	597
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	2 cut(s)	516, 905
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	429
AcvI	CACGTG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	3 cut(s)	47, 561, 859
AfiI	CCNNNNNNNGG	2 cut(s)	553, 846
AgsI	TTSAA	2 cut(s)	501, 764
AhdI	GACNNNNNGTC	1 cut(s)	631
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	676
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 440, 472
AluBI	AGCT	9 cut(s)	64, 72, 188, 202, 325, 334, 683, 719, 826
AluI	AGCT	9 cut(s)	64, 72, 188, 202, 325, 334, 683, 719, 826
Alw21I	GWGCWC	2 cut(s)	657, 706
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	2 cut(s)	335, 845
AoxI	GGCC	2 cut(s)	429, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	3 cut(s)	401, 523, 833
AsuC2I	CCSGG	3 cut(s)	521, 846, 847
AsuHPI	GGTGA	2 cut(s)	221, 431
AvaI	CYCGRG	2 cut(s)	335, 845
AvaII	GGWCC	3 cut(s)	401, 523, 833
BalI	TGGCCA	1 cut(s)	431
BauI	CACGAG	2 cut(s)	113, 861
BbrPI	CACGTG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	657, 706
BccI	CCATC	5 cut(s)	428, 616, 656, 782, 962
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	1 cut(s)	130
BcnI	CCSGG	3 cut(s)	521, 846, 847
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	614
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	4 cut(s)	521, 678, 846, 847
Bme18I	GGWCC	3 cut(s)	401, 523, 833
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmeT110I	CYCGRG	2 cut(s)	335, 845
BmgBI	CACGTC	1 cut(s)	796
BmgT120I	GGNCC	3 cut(s)	401, 523, 833
BmiI	GGNNCC	2 cut(s)	402, 675
BmrFI	CCNGG	4 cut(s)	521, 678, 846, 847
BmsI	GCATC	2 cut(s)	396, 857
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	2 cut(s)	350, 695
BpuEI	CTTGAG	3 cut(s)	50, 305, 346
BpuMI	CCSGG	3 cut(s)	521, 846, 847
Bsa29I	ATCGAT	1 cut(s)	147
BsaAI	YACGTR	2 cut(s)	123, 821
BsaHI	GRCGYC	1 cut(s)	594
BsaJI	CCNNGG	4 cut(s)	132, 845, 846, 919
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 846
BseBI	CCWGG	1 cut(s)	678
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	4 cut(s)	132, 845, 846, 919
BseGI	GGATG	4 cut(s)	416, 627, 781, 872
BseLI	CCNNNNNNNGG	2 cut(s)	553, 846
BseMII	CTCAG	2 cut(s)	341, 727
BseRI	GAGGAG	1 cut(s)	956
Bsh1236I	CGCG	2 cut(s)	516, 905
BshFI	GGCC	2 cut(s)	431, 579
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	657, 706
BsiHKCI	CYCGRG	2 cut(s)	335, 845
BsiSI	CCGG	2 cut(s)	521, 846
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	553, 846
BsmAI	GTCTC	1 cut(s)	514
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	431, 579
BsoBI	CYCGRG	2 cut(s)	335, 845
Bsp1286I	GDGCHC	2 cut(s)	657, 706
Bsp143I	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
Bsp68I	TCGCGA	1 cut(s)	516
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	2 cut(s)	431, 579
BspCNI	CTCAG	2 cut(s)	342, 726
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	516, 905
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	2 cut(s)	402, 675
BspPI	GGATC	1 cut(s)	262
BssECI	CCNNGG	4 cut(s)	132, 845, 846, 919
BssMI	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
BssNI	GRCGYC	1 cut(s)	594
BssSI	CACGAG	2 cut(s)	113, 861
Bst2BI	CACGAG	2 cut(s)	113, 861
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	920
BstACI	GRCGYC	1 cut(s)	594
BstBAI	YACGTR	2 cut(s)	123, 821
BstC8I	GCNNGC	2 cut(s)	7, 332
BstDEI	CTNAG	4 cut(s)	350, 604, 695, 713
BstDSI	CCRYGG	2 cut(s)	132, 919
BstF5I	GGATG	4 cut(s)	416, 627, 781, 872
BstFNI	CGCG	2 cut(s)	516, 905
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	7 cut(s)	257, 346, 543, 751, 816, 909, 939
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 680, 716
BstNI	CCWGG	1 cut(s)	678
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	4 cut(s)	519, 676, 844, 845
BstUI	CGCG	2 cut(s)	516, 905
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	2 cut(s)	250, 427
BstYI	RGATCY	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	431, 579
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	132, 919
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	4 cut(s)	416, 627, 781, 872
BtuMI	TCGCGA	1 cut(s)	516
Cac8I	GCNNGC	2 cut(s)	7, 332
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	3 cut(s)	401, 523, 833
Cfr9I	CCCGGG	1 cut(s)	845
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	46, 560, 858
CspCI	CAANNNNNGTGG	4 cut(s)	187, 222, 364, 399
CviAII	CATG	7 cut(s)	181, 368, 538, 670, 707, 871, 910
CviQI	GTAC	3 cut(s)	46, 560, 858
DdeI	CTNAG	4 cut(s)	350, 604, 695, 713
DpnI	GATC	7 cut(s)	256, 345, 542, 750, 815, 908, 938
DpnII	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
DriI	GACNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	429
Eam1105I	GACNNNNNGTC	1 cut(s)	631
Eco147I	AGGCCT	1 cut(s)	579
Eco47I	GGWCC	3 cut(s)	401, 523, 833
Eco72I	CACGTG	1 cut(s)	123
Eco88I	CYCGRG	2 cut(s)	335, 845
EcoRII	CCWGG	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	872
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	7 cut(s)	184, 371, 541, 673, 710, 874, 913
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	7 cut(s)	180, 367, 537, 669, 706, 870, 909
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	4 cut(s)	403, 634, 768, 879
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	2 cut(s)	431, 579
HapII	CCGG	2 cut(s)	521, 846
HhaI	GCGC	1 cut(s)	613
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	7 cut(s)	184, 371, 541, 673, 710, 874, 913
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	3 cut(s)	94, 739, 802
HindII	GTYRAC	3 cut(s)	94, 739, 802
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	4 cut(s)	476, 632, 740, 898
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	2 cut(s)	521, 846
HphI	GGTGA	2 cut(s)	221, 431
Hpy166II	GTNNAC	4 cut(s)	94, 120, 739, 802
Hpy188I	TCNGA	5 cut(s)	107, 405, 716, 748, 837
Hpy188III	TCNNGA	5 cut(s)	67, 349, 515, 769, 910
Hpy8I	GTNNAC	4 cut(s)	94, 120, 739, 802
Hpy99I	CGWCG	2 cut(s)	457, 599
HpyAV	CCTTC	4 cut(s)	90, 212, 397, 569
HpyCH4III	ACNGT	1 cut(s)	920
HpyCH4IV	ACGT	6 cut(s)	122, 455, 558, 594, 795, 820
HpyCH4V	TGCA	1 cut(s)	870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 680, 716
HpyF3I	CTNAG	4 cut(s)	350, 604, 695, 713
HpySE526I	ACGT	6 cut(s)	122, 455, 558, 594, 795, 820
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	7 cut(s)	184, 371, 541, 673, 710, 874, 913
HspAI	GCGC	1 cut(s)	611
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
LmnI	GCTCC	3 cut(s)	679, 680, 896
LpnPI	CCDG	5 cut(s)	362, 534, 663, 690, 859
LweI	GCATC	2 cut(s)	396, 857
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	6 cut(s)	122, 455, 558, 594, 795, 820
MaeIII	GTNAC	2 cut(s)	151, 884
MalI	GATC	7 cut(s)	256, 345, 542, 750, 815, 908, 938
MboI	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
MboII	GAAGA	4 cut(s)	179, 278, 535, 940
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	2 cut(s)	657, 706
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	3 cut(s)	470, 641, 734
MmeI	TCCRAC	3 cut(s)	336, 809, 860
MnlI	CCTC	6 cut(s)	329, 420, 452, 515, 536, 934
Mox20I	TGGCCA	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	872
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	3 cut(s)	74, 801, 852
MslI	CAYNNNNRTG	2 cut(s)	158, 875
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	2 cut(s)	521, 846
MspR9I	CCNGG	4 cut(s)	521, 678, 846, 847
MvaI	CCWGG	1 cut(s)	678
MvnI	CGCG	2 cut(s)	516, 905
MwoI	GCNNNNNNNGC	3 cut(s)	331, 680, 716
NciI	CCSGG	3 cut(s)	521, 846, 847
NdeII	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
NlaIII	CATG	7 cut(s)	184, 371, 541, 673, 710, 874, 913
NlaIV	GGNNCC	2 cut(s)	402, 675
NmuCI	GTSAC	1 cut(s)	151
NruI	TCGCGA	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	872
NspI	RCATGY	1 cut(s)	874
PaeR7I	CTCGAG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	909
PceI	AGGCCT	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 111, 513
PfeI	GAWTC	1 cut(s)	898
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	1 cut(s)	610
PleI	GAGTC	3 cut(s)	470, 640, 734
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
PpsI	GAGTC	3 cut(s)	470, 640, 734
Ppu21I	YACGTR	2 cut(s)	123, 821
Psp6I	CCWGG	1 cut(s)	676
PspCI	CACGTG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	402, 675
PspPI	GGNCC	3 cut(s)	401, 523, 833
PspXI	VCTCGAGB	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	254
RruI	TCGCGA	1 cut(s)	516
RsaI	GTAC	3 cut(s)	47, 561, 859
RsaNI	GTAC	3 cut(s)	46, 560, 858
RseI	CAYNNNNRTG	2 cut(s)	158, 875
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	74, 801, 852
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	7 cut(s)	254, 343, 540, 748, 813, 906, 936
Sau96I	GGNCC	3 cut(s)	401, 523, 833
SchI	GAGTC	3 cut(s)	470, 641, 734
ScrFI	CCNGG	4 cut(s)	521, 678, 846, 847
SduI	GDGCHC	2 cut(s)	657, 706
SfaNI	GCATC	2 cut(s)	396, 857
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	3 cut(s)	401, 523, 833
SlaI	CTCGAG	1 cut(s)	335
SmaI	CCCGGG	1 cut(s)	847
SmiMI	CAYNNNNRTG	2 cut(s)	158, 875
SmlI	CTYRAG	4 cut(s)	65, 320, 335, 361
SmoI	CTYRAG	4 cut(s)	65, 320, 335, 361
Sse9I	AATT	1 cut(s)	246
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	4 cut(s)	519, 676, 844, 845
TaaI	ACNGT	1 cut(s)	920
TaiI	ACGT	6 cut(s)	125, 458, 561, 597, 798, 823
TaqI	TCGA	9 cut(s)	39, 93, 147, 336, 342, 474, 651, 939, 957
TasI	AATT	1 cut(s)	246
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	898
Tru1I	TTAA	3 cut(s)	74, 801, 852
Tru9I	TTAA	3 cut(s)	74, 801, 852
TseFI	GTSAC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	926
TspGWI	ACGGA	2 cut(s)	149, 569
TspMI	CCCGGG	1 cut(s)	845
VpaK11BI	GGWCC	3 cut(s)	401, 523, 833
XceI	RCATGY	1 cut(s)	874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XhoI	CTCGAG	1 cut(s)	335
XmaI	CCCGGG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	326
ZraI	GACGTC	1 cut(s)	595
Zsp2I	ATGCAT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.