Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008309

Physical Location & Seq

Genomic Coordinates Forward (+)

6584107 .. 6585153

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G088200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTTCCTTCCAAATCTCCAACTCGGAAACCCAAATTCCTGCCCAGCTTCTCATAGCTCGCATTACACAACTTCATTCAAGCATTTCCAAACTTGACTCTCTTCGACCTTCAAAGCAAGTCAATGCCCTCTTCTCTCAGCTGGTCAAATTATGCATTCTTCCATGTGACATAGATATCATGGACTTGTCCAAAGAAGCCCAAGTTATGCGTGAGAGTCTCATGAATCTTTGTGGCCGAGCCGAGGGCTTTTTGGAGCTTGAATTCGCCACACTCCTTGTGAGTGTTCCTCAACCTCTAAACAATCTCAATCTCTTCCCTTATTACAGTAACTATGTCCTCCTGGCCAACTTAGAGCACAAGATTCTCCTCGACAATGGGTTGGTGCATCCACACAAGGTAGCCTTTGTTGGGTCGGGGCCGATGCCTCTCACTTCCATGATAATGGCTACTCATCACATGAAATCCACTAATTTTGACAACTTTGACATTGATGAGAAGGCGAACGATGTAGCTCGAAAAATTGTTGCTTCAGACGCTGAGCTAGCAAAGAGGATGAAGTTTGAGACACATGATGTAATGAAACTTAGAGAGAGGCTTGGAGAATATGACTGCATATTTTTGGCTGCCTTGGTGGGCATGAAAAAGGAAGAGAAGATAAAGATTCTTGGGCATATTGGGAAGTACATGAAGGAGGGAAGCGTTTTGCTTGTGAGGAGTGCAAAAGGGGCAAGAGCATTTTTGTACCCTGTTGTTGAGGAGCATGACTTGCTGGGATTTGAGCTTCTTACAATCTTCCATCCAAATAATGAAGTTGTCAACTCGGTTGTTCTTGTGCGCAAGCCTACCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

285

Amino Acids

31.94

Weight (kDa)

6.8

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09240 AT1G56430 AT5G04950 AT5G56080
fragaria_vesca	FvH4_4g09260
malus_domestica	MD13G1268200.v1.1 MD13G1268300.v1.1
prunus_persica	Prupe.1G088200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402811 RchiOBHm_Chr7g0220311
rosa_laevigata	RLG00000002237
rosa_multiflora	Rmu_co8364683.1_g000001 Rmu_sc0001136.1_g000077 Rmu_sc0001565.1_g000052 Rmu_sc0008058.1_g000003
rosa_roxburghii	Rroxscaffold_3G00239630
rosa_rugosa	Rorug07G0192700
rosa_samantha	Rh4DG109000 Rh7AG334000 Rh7BG324900 Rh7CG351700 Rh7DG330700
rosa_wichuraiana	Rw7G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	839
AcoI	YGGCCR	2 cut(s)	235, 345
AcsI	RAATTY	2 cut(s)	36, 263
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	2 cut(s)	686, 746
AfiI	CCNNNNNNNGG	2 cut(s)	244, 411
AgsI	TTSAA	3 cut(s)	81, 114, 263
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	7 cut(s)	49, 59, 142, 259, 515, 544, 784
AluI	AGCT	7 cut(s)	49, 59, 142, 259, 515, 544, 784
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	224, 560
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	3 cut(s)	235, 345, 419
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	2 cut(s)	36, 263
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	1 cut(s)	419
AsuNHI	GCTAGC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	1 cut(s)	807
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	224, 560
BfaI	CTAG	2 cut(s)	545, 853
BisI	GCNGC	1 cut(s)	627
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	397, 414
BmtI	GCTAGC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
Bpu1102I	GCTNAGC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	243, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 411
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	243, 630
BseGI	GGATG	3 cut(s)	388, 561, 799
BseLI	CCNNNNNNNGG	2 cut(s)	244, 411
BseMII	CTCAG	2 cut(s)	152, 531
BseRI	GAGGAG	3 cut(s)	359, 730, 773
BseXI	GCAGC	1 cut(s)	613
BseYI	CCCAGC	2 cut(s)	45, 772
BshFI	GGCC	3 cut(s)	237, 347, 421
BsiHKAI	GWGCWC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	244, 411
BsmAI	GTCTC	2 cut(s)	224, 560
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	3 cut(s)	237, 347, 421
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp1720I	GCTNAGC	1 cut(s)	540
BspANI	GGCC	3 cut(s)	237, 347, 421
BspCNI	CTCAG	2 cut(s)	151, 532
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	243, 630
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	4 cut(s)	108, 137, 320, 645
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstC8I	GCNNGC	3 cut(s)	61, 546, 842
BstDEI	CTNAG	4 cut(s)	138, 352, 540, 587
BstF5I	GGATG	3 cut(s)	388, 561, 799
BstHHI	GCGC	1 cut(s)	840
BstMAI	GTCTC	2 cut(s)	224, 560
BstMWI	GCNNNNNNNGC	4 cut(s)	536, 545, 728, 769
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	613
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	237, 347, 421
BtsCI	GGATG	3 cut(s)	388, 561, 799
Cac8I	GCNNGC	3 cut(s)	61, 546, 842
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	685, 745
CspCI	CAANNNNNGTGG	4 cut(s)	259, 294, 457, 492
CviAII	CATG	9 cut(s)	165, 181, 223, 439, 460, 572, 640, 688, 764
CviQI	GTAC	2 cut(s)	685, 745
DdeI	CTNAG	4 cut(s)	138, 352, 540, 587
EaeI	YGGCCR	2 cut(s)	235, 345
Eam1104I	CTCTTC	4 cut(s)	108, 137, 320, 645
EarI	CTCTTC	4 cut(s)	108, 137, 320, 645
Eco130I	CCWWGG	1 cut(s)	630
Eco32I	GATATC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	342
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	9 cut(s)	168, 184, 226, 442, 463, 575, 643, 691, 767
FalI	AAGNNNNNCTT	3 cut(s)	389, 421, 833
FatI	CATG	9 cut(s)	164, 180, 222, 438, 459, 571, 639, 687, 763
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	3 cut(s)	375, 568, 786
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	545, 853
FspI	TGCGCA	1 cut(s)	839
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	1 cut(s)	627
GsaI	CCCAGC	2 cut(s)	49, 776
HaeIII	GGCC	3 cut(s)	237, 347, 421
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	9 cut(s)	168, 184, 226, 442, 463, 575, 643, 691, 767
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HinfI	GANTC	5 cut(s)	98, 217, 226, 364, 664
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	2 cut(s)	28, 535
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	820
HpyAV	CCTTC	4 cut(s)	19, 120, 493, 685
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	4 cut(s)	156, 388, 615, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	536, 545, 728, 769
HpyF3I	CTNAG	4 cut(s)	138, 352, 540, 587
Hsp92II	CATG	9 cut(s)	168, 184, 226, 442, 463, 575, 643, 691, 767
HspAI	GCGC	1 cut(s)	838
LmnI	GCTCC	2 cut(s)	256, 760
LpnPI	CCDG	7 cut(s)	54, 59, 128, 329, 356, 758, 762
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	2 cut(s)	397, 414
MaeI	CTAG	2 cut(s)	545, 853
MaeIII	GTNAC	2 cut(s)	167, 329
MboII	GAAGA	7 cut(s)	95, 124, 152, 307, 662, 667, 787
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	5 cut(s)	36, 149, 263, 472, 522
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	92, 226
MmeI	TCCRAC	1 cut(s)	45
Mox20I	TGGCCA	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	347
MslI	CAYNNNNRTG	2 cut(s)	437, 443
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	536, 545, 728, 769
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	9 cut(s)	168, 184, 226, 442, 463, 575, 643, 691, 767
NlaIV	GGNNCC	1 cut(s)	420
NmeAIII	GCCGAG	2 cut(s)	263, 268
NmuCI	GTSAC	1 cut(s)	167
NsbI	TGCGCA	1 cut(s)	839
NsiI	ATGCAT	1 cut(s)	158
PagI	TCATGA	1 cut(s)	222
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	226, 364, 664
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	2 cut(s)	92, 225
PpsI	GAGTC	2 cut(s)	92, 225
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	2 cut(s)	45, 772
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	686, 746
RsaNI	GTAC	2 cut(s)	685, 745
RseI	CAYNNNNRTG	2 cut(s)	437, 443
SatI	GCNGC	1 cut(s)	627
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	2 cut(s)	92, 226
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	397, 414
SmiMI	CAYNNNNRTG	2 cut(s)	437, 443
Sse9I	AATT	5 cut(s)	36, 149, 263, 472, 522
SspMI	CTAG	2 cut(s)	545, 853
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	106, 372, 517
TasI	AATT	5 cut(s)	36, 149, 263, 472, 522
TatI	WGTACW	1 cut(s)	684
TfiI	GAWTC	3 cut(s)	226, 364, 664
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	8 cut(s)	65, 239, 476, 572, 596, 656, 704, 825
XapI	RAATTY	2 cut(s)	36, 263
XspI	CTAG	2 cut(s)	545, 853
Zsp2I	ATGCAT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.