Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0008309

Physical Location & Seq

Genomic Coordinates Reverse (-)

363109 .. 363980

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgatggcattcaacttctataatgcttatattgggttgaggttggataaagatgtcaactccctcttcacccagctggtcaagttgtgcactcttccatcttcgttggatgttcatgacttatccgaagaggtccaaattatgcgcgagagtctcatcagtctctgcagccgagccgaaggtctgttagagcttgagtttgccacactcctagggaaaacctctcaacccatgaacaaccttaatcttttcccctactatggtaattatgtcctgcttgccaatttggagaacaaaattcttaatggcagtggggtggtgcatcctaacaaggtcgcctttatcgggtcaggaccaatgcctctcacttccattgtaatggctacccatcacatgaagtccgctcatttcgataactttgatatcgatgacaaggccaatgaggtggctcgccgaattgttgcctcagacgctgatctagagaagaggatgacgtttgaaacttgtgatatcatgaatgttcaggagaggcttgccgagtatgattgcatatttttggcagctctggtgggaatgaacaaggaagacaaggtgaagattctcgggcatattaggaagtatatgaaggaaggaagctttttgcttgtgaggagtgcgaaaggggctagggcattcttgtaccctgttattgaggagcgtgacttgctgggctttgagcttttgacaatcttccatcccaataatgaggtcataaactctgttgttcttgtgcgcaaacctatcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAS

Protein Analysis

262

Amino Acids

29.6

Weight (kDa)

5.83

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09240 AT1G56430 AT5G04950 AT5G56080
fragaria_vesca	FvH4_4g09260
malus_domestica	MD13G1268200.v1.1 MD13G1268300.v1.1
prunus_persica	Prupe.1G088200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402811 RchiOBHm_Chr7g0220311
rosa_laevigata	RLG00000002237
rosa_multiflora	Rmu_co8364683.1_g000001 Rmu_sc0001136.1_g000077 Rmu_sc0001565.1_g000052 Rmu_sc0008058.1_g000003
rosa_roxburghii	Rroxscaffold_3G00239630
rosa_rugosa	Rorug07G0192700
rosa_samantha	Rh4DG109000 Rh7AG334000 Rh7BG324900 Rh7CG351700 Rh7DG330700
rosa_wichuraiana	Rw7G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	773
AccBSI	CCGCTC	1 cut(s)	404
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	2 cut(s)	260, 345
AgsI	TTSAA	2 cut(s)	13, 500
AluBI	AGCT	5 cut(s)	76, 193, 563, 636, 718
AluI	AGCT	5 cut(s)	76, 193, 563, 636, 718
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	158, 167
Alw44I	GTGCAC	1 cut(s)	88
AlwNI	CAGNNNCTG	2 cut(s)	165, 473
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	168, 560
ApoI	RAATTY	1 cut(s)	297
AspA2I	CCTAGG	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	147, 774
AspS9I	GGNCC	2 cut(s)	133, 353
AsuHPI	GGTGA	2 cut(s)	61, 604
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	2 cut(s)	133, 353
AvrII	CCTAGG	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	180, 572
BccI	CCATC	3 cut(s)	106, 396, 741
BcoDI	GTCTC	2 cut(s)	158, 167
BfaI	CTAG	3 cut(s)	212, 479, 666
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	169, 561
BlnI	CCTAGG	1 cut(s)	211
BlsI	GCNGC	2 cut(s)	170, 562
Bme18I	GGWCC	2 cut(s)	133, 353
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	133, 353
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 345
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	4 cut(s)	115, 322, 495, 733
BseLI	CCNNNNNNNGG	2 cut(s)	260, 345
BseMII	CTCAG	1 cut(s)	480
BseRI	GAGGAG	2 cut(s)	664, 707
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	180, 572
BseYI	CCCAGC	2 cut(s)	72, 706
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	437
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	260, 345
BsmAI	GTCTC	2 cut(s)	158, 167
BsmI	GAATGC	2 cut(s)	8, 671
BsnI	GGCC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	1 cut(s)	402
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	1 cut(s)	479
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	2 cut(s)	115, 513
BspMAI	CTGCAG	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	211
Bst6I	CTCTTC	4 cut(s)	71, 99, 123, 479
BstC8I	GCNNGC	3 cut(s)	279, 451, 534
BstDEI	CTNAG	1 cut(s)	466
BstF5I	GGATG	4 cut(s)	115, 322, 495, 733
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	147, 774
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	2 cut(s)	158, 167
BstMBI	GATC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 662, 703
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	180, 572
BstV2I	GAAGAC	1 cut(s)	591
BstXI	CCANNNNNNTGG	2 cut(s)	379, 445
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	437
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	115, 322, 495, 733
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	279, 451, 534
CaiI	CAGNNNCTG	2 cut(s)	165, 473
CciI	TCATGA	2 cut(s)	115, 513
CfoI	GCGC	2 cut(s)	147, 774
Cfr13I	GGNCC	2 cut(s)	133, 353
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	4 cut(s)	116, 232, 394, 514
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
Eam1104I	CTCTTC	4 cut(s)	71, 99, 123, 479
EarI	CTCTTC	4 cut(s)	71, 99, 123, 479
Eco130I	CCWWGG	1 cut(s)	211
Eco32I	GATATC	2 cut(s)	424, 511
Eco47I	GGWCC	2 cut(s)	133, 353
Eco88I	CYCGRG	1 cut(s)	602
EcoRV	GATATC	2 cut(s)	424, 511
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	4 cut(s)	119, 235, 397, 517
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	4 cut(s)	115, 231, 393, 513
Fnu4HI	GCNGC	2 cut(s)	169, 561
FokI	GGATG	4 cut(s)	122, 309, 502, 720
Fsp4HI	GCNGC	2 cut(s)	169, 561
FspBI	CTAG	3 cut(s)	212, 479, 666
FspI	TGCGCA	1 cut(s)	773
GlaI	GCGC	2 cut(s)	146, 773
GluI	GCNGC	2 cut(s)	169, 561
GsaI	CCCAGC	2 cut(s)	76, 710
HaeIII	GGCC	1 cut(s)	437
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	2 cut(s)	147, 774
Hin1II	CATG	4 cut(s)	119, 235, 397, 517
Hin6I	GCGC	2 cut(s)	145, 772
HinP1I	GCGC	2 cut(s)	145, 772
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	634
HinfI	GANTC	2 cut(s)	151, 598
HphI	GGTGA	2 cut(s)	61, 604
Hpy166II	GTNNAC	2 cut(s)	58, 90
Hpy188I	TCNGA	2 cut(s)	127, 469
Hpy188III	TCNNGA	5 cut(s)	116, 351, 479, 514, 524
Hpy8I	GTNNAC	2 cut(s)	58, 90
HpyAV	CCTTC	3 cut(s)	173, 619, 623
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	4 cut(s)	90, 168, 322, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 662, 703
HpyF3I	CTNAG	1 cut(s)	466
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	119, 235, 397, 517
HspAI	GCGC	2 cut(s)	145, 772
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	8 cut(s)	62, 86, 287, 336, 509, 551, 692, 696
Lsp1109I	GCAGC	2 cut(s)	180, 572
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	212, 479, 666
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	1 cut(s)	477
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	1 cut(s)	475
MboII	GAAGA	8 cut(s)	58, 86, 93, 140, 496, 596, 607, 721
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	5 cut(s)	138, 265, 283, 297, 456
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	24, 87
MseI	TTAA	3 cut(s)	243, 303, 787
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	76
Mva1269I	GAATGC	2 cut(s)	8, 671
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	470, 662, 703
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	4 cut(s)	119, 235, 397, 517
NmeAIII	GCCGAG	2 cut(s)	197, 562
NmuCI	GTSAC	1 cut(s)	698
NsbI	TGCGCA	1 cut(s)	773
PagI	TCATGA	2 cut(s)	115, 513
PctI	GAATGC	2 cut(s)	8, 671
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	170, 562
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PspFI	CCCAGC	2 cut(s)	72, 706
PspPI	GGNCC	2 cut(s)	133, 353
PstI	CTGCAG	1 cut(s)	170
PstNI	CAGNNNCTG	2 cut(s)	165, 473
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	243, 303, 787
SatI	GCNGC	2 cut(s)	169, 561
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	2 cut(s)	133, 353
SchI	GAGTC	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	2 cut(s)	133, 353
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	138, 265, 283, 297, 456
SsiI	CCGC	1 cut(s)	402
SspMI	CTAG	3 cut(s)	212, 479, 666
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	411, 426
TasI	AATT	5 cut(s)	138, 265, 283, 297, 456
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	3 cut(s)	243, 303, 787
Tru9I	TTAA	3 cut(s)	243, 303, 787
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	2 cut(s)	168, 560
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	6 cut(s)	104, 248, 410, 530, 590, 638
TspRI	CASTG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	133, 353
XapI	RAATTY	1 cut(s)	297
XbaI	TCTAGA	1 cut(s)	478
XmaJI	CCTAGG	1 cut(s)	211
XspI	CTAG	3 cut(s)	212, 479, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.