AT1G09310

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005425
Physical Location & Seq
Forward (+)
3008910 .. 3009898
989 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09310.1

Sequence Viewer

Length: 540 bp
ATGGGTTTGGTTACAGAGGAGGTGAGAGCTAAGGCAGAGATGTACACCGGAGATGAGATATGTAGAGAGAAGACAAAGTGTTTCCTCAAGGAAATATCTATGCCCAATGGTTTATTACCATTGAAGGATATAGAAGAGGTTGGGTATGACAGAGAGTCAGGTGTTGTATGGCTGAAGCAGAAGAAGAGCATCACTCACAAGTTCACAGAGATAGATAAGCTTGTCTCCTATGGAACCGAAGTCACAGCCATTGTTGAGACCGGGAAAATCAAGAAGCTCACTGGAGTCAAAGCCAAGGAACTTCTTATTTGGGTCACTATCAATGAGATCTATACCGAGGAACCCCCTACCAAGATCACGTTCAAGACACCGACCACACTGTCCAGGACTTTCCCGGTCACAGCTTTTATAGTCCCAGAAGAACCTGCCAAGGAGGAACCTGCCAAAGAGGAACCTGCCAAGGAGAAGAGCAGCGAAGCCACCGAGGCCAAGGAGGCTGTTGCAATCAAGGAGGCTGTCGCAGTCAAAGAGGCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

179

Amino Acids

19.95

Weight (kDa)

5.37

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 28 - 136 6e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 379
Acc36I ACCTGC 3 cut(s) 433, 448, 463
AciI CCGC 1 cut(s) 533
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 2 cut(s) 124, 364
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 4 cut(s) 29, 220, 277, 404
AluI AGCT 4 cut(s) 29, 220, 277, 404
Alw26I GTCTC 2 cut(s) 229, 251
AoxI GGCC 2 cut(s) 486, 534
ApeKI GCWGC 1 cut(s) 471
AsuC2I CCSGG 2 cut(s) 262, 395
AsuHPI GGTGA 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 483
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 2 cut(s) 262, 395
BcoDI GTCTC 2 cut(s) 229, 251
BfuAI ACCTGC 3 cut(s) 433, 448, 463
BglI GCCNNNNNGGC 2 cut(s) 485, 494
BglII AGATCT 1 cut(s) 327
BisI GCNGC 2 cut(s) 472, 534
BlsI GCNGC 2 cut(s) 473, 535
Bme1390I CCNGG 3 cut(s) 262, 385, 395
BmeRI GACNNNNNGTC 1 cut(s) 154
BmiI GGNNCC 4 cut(s) 235, 342, 438, 453
BmrFI CCNGG 3 cut(s) 262, 385, 395
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 262, 395
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 6 cut(s) 294, 336, 429, 459, 483, 489
BsaWI WCCGGW 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 6 cut(s) 294, 336, 429, 459, 483, 489
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 483
BshFI GGCC 2 cut(s) 488, 536
BsiSI CCGG 3 cut(s) 48, 261, 395
BslFI GGGAC 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 229, 251
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 2 cut(s) 488, 536
Bso31I GGTCTC 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 327, 354
BspACI CCGC 1 cut(s) 533
BspANI GGCC 2 cut(s) 488, 536
BspLI GGNNCC 4 cut(s) 235, 342, 438, 453
BspMI ACCTGC 3 cut(s) 433, 448, 463
BspQI GCTCTTC 2 cut(s) 179, 461
BspTNI GGTCTC 1 cut(s) 251
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 6 cut(s) 294, 336, 429, 459, 483, 489
BssMI GATC 2 cut(s) 327, 354
BssT1I CCWWGG 4 cut(s) 294, 429, 459, 489
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 3 cut(s) 129, 179, 461
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 2 cut(s) 330, 357
BstMAI GTCTC 2 cut(s) 229, 251
BstMBI GATC 2 cut(s) 327, 354
BstMWI GCNNNNNNNGC 2 cut(s) 485, 494
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 260, 383, 393
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 2 cut(s) 488, 536
BtsIMutI CAGTG 2 cut(s) 279, 377
BveI ACCTGC 3 cut(s) 433, 448, 463
Csp6I GTAC 1 cut(s) 43
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 329, 356
DpnII GATC 2 cut(s) 327, 354
DrdI GACNNNNNNGTC 1 cut(s) 379
DriI GACNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 379
Eam1104I CTCTTC 3 cut(s) 129, 179, 461
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 3 cut(s) 129, 179, 461
Eco130I CCWWGG 4 cut(s) 294, 429, 459, 489
Eco31I GGTCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 4 cut(s) 294, 429, 459, 489
ErhI CCWWGG 4 cut(s) 294, 429, 459, 489
FaiI YATR 8 cut(s) 61, 101, 131, 147, 169, 231, 333, 410
FaqI GGGAC 1 cut(s) 398
Fnu4HI GCNGC 2 cut(s) 472, 534
Fsp4HI GCNGC 2 cut(s) 472, 534
GluI GCNGC 2 cut(s) 472, 534
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 488, 536
HapII CCGG 3 cut(s) 48, 261, 395
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 155, 285
HpaII CCGG 3 cut(s) 48, 261, 395
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 45, 204
Hpy188III TCNNGA 2 cut(s) 271, 364
Hpy8I GTNNAC 2 cut(s) 45, 204
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 1 cut(s) 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 494
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 359
Kzo9I GATC 2 cut(s) 327, 354
LguI GCTCTTC 2 cut(s) 179, 461
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 1 cut(s) 198
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 4 cut(s) 10, 241, 313, 397
MalI GATC 2 cut(s) 329, 356
MboI GATC 2 cut(s) 327, 354
MboII GAAGA 6 cut(s) 82, 146, 193, 196, 431, 478
MflI RGATCY 1 cut(s) 327
MlyI GAGTC 2 cut(s) 164, 294
MspI CCGG 3 cut(s) 48, 261, 395
MspR9I CCNGG 3 cut(s) 262, 385, 395
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 485, 494
NciI CCSGG 2 cut(s) 262, 395
NdeII GATC 2 cut(s) 327, 354
NlaIV GGNNCC 4 cut(s) 235, 342, 438, 453
NmuCI GTSAC 3 cut(s) 241, 313, 397
PciSI GCTCTTC 2 cut(s) 179, 461
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 2 cut(s) 473, 535
PleI GAGTC 2 cut(s) 163, 293
PpsI GAGTC 2 cut(s) 163, 293
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 4 cut(s) 235, 342, 438, 453
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 2 cut(s) 179, 461
SatI GCNGC 2 cut(s) 472, 534
Sau3AI GATC 2 cut(s) 327, 354
SchI GAGTC 2 cut(s) 164, 294
ScrFI CCNGG 3 cut(s) 262, 385, 395
SfaNI GCATC 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SsiI CCGC 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 260, 383, 393
StyI CCWWGG 4 cut(s) 294, 429, 459, 489
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 1 cut(s) 362
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 536
TscAI CASTG 2 cut(s) 286, 384
TseFI GTSAC 3 cut(s) 241, 313, 397
TseI GCWGC 1 cut(s) 471
Tsp45I GTSAC 3 cut(s) 241, 313, 397
TspRI CASTG 2 cut(s) 286, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.