AT1G56580

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005425
Physical Location & Seq
Reverse (-)
21198004 .. 21199126
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56580.1

Sequence Viewer

Length: 501 bp
ATGGGTTTGGTTACAGATGAAGTGAGAGCTAGGGCAGAGAAATACACAGGAGATGAGATATGCCGTGAGAAGACAAAGGAGTTTCTCAAGGAAGTTTCTATGCCTAATGGTTTATTGCCATTGAAGGACATTGAAGAAGTTGGTTACGACAGAGAGACAGGTATTGTCTGGCTGAAGCAGAAGAAGAGCATCACCCACAAGTTTGAAGCCATTGGTAAACTTGTCTCTTACGCCACCGAGGTCATTGCACAGGTGGAGGTCGGAAAGATCAAGAAGCTTACCGGTGTTAAGGCCAAGGAGCTTCTTATTTGGGTCACTCTCAATGAGCTTGTCTTGGAGCAGCCGACAAGTTCAGGGAAGATCAATTTCAGGACACCAACTGGTCTGTCCAGGACTTTCCCAGTGTCTGCTTTCGTTGTTCCTGAAGTTGAGAAGCCTGCAACGGAGAAGAACAATGGAACCACTGAGGTCAAAGAAGCTGTTGCAGTCACAGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

166

Amino Acids

18.41

Weight (kDa)

6.64

Isoelectric Point (pI)

22.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 26 - 138 6.5e-30 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 194, 444
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 3 cut(s) 124, 134, 206
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 5 cut(s) 29, 277, 301, 328, 479
AluI AGCT 5 cut(s) 29, 277, 301, 328, 479
Alw26I GTCTC 2 cut(s) 149, 229
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 340
AsiGI ACCGGT 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 149, 229
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 391
BmrI ACTGGG 1 cut(s) 395
BmsI GCATC 2 cut(s) 198, 484
BmuI ACTGGG 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 237, 294
BsaWI WCCGGW 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 385, 401
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 237, 294
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 2 cut(s) 385, 401
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 281
BsiSI CCGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 149, 229
BsnI GGCC 1 cut(s) 293
Bsp143I GATC 2 cut(s) 267, 360
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 460
BspQI GCTCTTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 385, 401
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 237, 294
BssMI GATC 2 cut(s) 267, 360
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 465, 498
BstKTI GATC 2 cut(s) 270, 363
BstMAI GTCTC 2 cut(s) 149, 229
BstMBI GATC 2 cut(s) 267, 360
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 352
BstV2I GAAGAC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 408, 462
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 281
CspAI ACCGGT 1 cut(s) 281
DdeI CTNAG 2 cut(s) 465, 498
DpnI GATC 2 cut(s) 269, 362
DpnII GATC 2 cut(s) 267, 360
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 294
Eco57I CTGAAG 2 cut(s) 194, 444
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaiI YATR 2 cut(s) 61, 101
Fnu4HI GCNGC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 341
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 275
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 3 cut(s) 271, 370, 422
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 248, 440, 485
HpyF3I CTNAG 2 cut(s) 465, 498
Kzo9I GATC 2 cut(s) 267, 360
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 2 cut(s) 298, 337
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 2 cut(s) 198, 484
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 4 cut(s) 10, 143, 313, 487
MalI GATC 2 cut(s) 269, 362
MboI GATC 2 cut(s) 267, 360
MboII GAAGA 6 cut(s) 82, 146, 193, 196, 370, 460
MluCI AATT 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 232, 250, 460
MseI TTAA 1 cut(s) 288
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 391
NdeII GATC 2 cut(s) 267, 360
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 2 cut(s) 313, 487
PciSI GCTCTTC 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 389
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 2 cut(s) 267, 360
ScrFI CCNGG 1 cut(s) 391
SfaNI GCATC 2 cut(s) 198, 484
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 389
StyI CCWWGG 1 cut(s) 294
TasI AATT 1 cut(s) 364
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 408, 469
TseFI GTSAC 2 cut(s) 313, 487
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 2 cut(s) 313, 487
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 408, 469
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.