Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005425

Physical Location & Seq

Genomic Coordinates Reverse (-)

27832401 .. 27833216

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCTCTTGTGACAGCAGAGATCAAGAGCAAGGCTGATGAGTTGTACCATGGAGATGGAATCTGCCAAGAAAAGTCAAAGAAATTGCTCACAGAAATCAGCCTGCCCAATGGCCTCTTGCCCTTGAAAGACATGGAGGAATGTGGTTATGTGAAGGAGACTGGGTTTGTGTGGCTTAAGCAGAAGAAGAGCACAACCCACAAGTTTGAAAAGATTGGGAAGCTGGTCAGTTATGCCCCTGAAGTCACAGCCTATGTTGAGAATGGCAAGATCAAGAAGCTCACCGGGGTCAAGACCAAGGAGCTCTTGGTTTGGGTGTCACTCAGTGACATTTACGTTGATGACCCTCCAACTGGGAAAATCACTTTCAAGACTCCTTCTGGGCTTTTTAGGACTTTCCCTGTGTCAGCTTTTGAGAATGAGGAAGCTGCTAACAAGGATGTCAAGGACAAGAAGGAAGTGAAGGAAGCCAAGGGAGCTGTGGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

164

Amino Acids

18.16

Weight (kDa)

8.35

Isoelectric Point (pI)

23.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09310 AT1G56580
fragaria_vesca	FvH4_5g26660 FvH4_6g07820 FvH4_6g07830
malus_domestica	MD04G1191700.v1.1 MD13G1256800.v1.1
prunus_persica	Prupe.6G310300_v2.0.a1
pyrus_communis	pycom04g16930 pycom12g19090
rosa_chinensis	RchiOBHm_Chr3g0457531
rosa_laevigata	RLG00000025213 RLG00000025215
rosa_multiflora	Rmu_sc0007404.1_g000007 Rmu_sc0007404.1_g000011
rosa_roxburghii	Rroxscaffold_6G00421760 Rroxscaffold_6G00421790
rosa_rugosa	Rorug03G0020800 Rorug03G0021100
rosa_samantha	Rh3AG081500 Rh3AG081700 Rh3BG083700 Rh3BG083900 Rh3CG083900 Rh3CG084100 Rh3DG085300 Rh3DG085400
rosa_wichuraiana	Rw3G007000 Rw3G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	127, 209, 370
AluBI	AGCT	6 cut(s)	223, 280, 304, 410, 428, 479
AluI	AGCT	6 cut(s)	223, 280, 304, 410, 428, 479
Alw21I	GWGCWC	2 cut(s)	194, 306
Alw26I	GTCTC	2 cut(s)	9, 152
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	194, 306
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	9, 152
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	286
BmrI	ACTGGG	2 cut(s)	171, 363
BmuI	ACTGGG	2 cut(s)	171, 363
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	49, 285, 297, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	166, 358
BseDI	CCNNGG	4 cut(s)	49, 285, 297, 471
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	166, 358
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	194, 306
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	9, 152
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	194, 306
Bsp143I	GATC	2 cut(s)	21, 270
Bsp19I	CCATGG	1 cut(s)	49
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	166, 358
BssECI	CCNNGG	4 cut(s)	49, 285, 297, 471
BssMI	GATC	2 cut(s)	21, 270
BssT1I	CCWWGG	3 cut(s)	49, 297, 471
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	2 cut(s)	24, 273
BstMAI	GTCTC	2 cut(s)	9, 152
BstMBI	GATC	2 cut(s)	21, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	50, 133
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	23, 272
DpnII	GATC	2 cut(s)	21, 270
DraIII	CACNNNGTG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	3 cut(s)	49, 297, 471
Eco24I	GRGCYC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	304
EcoT14I	CCWWGG	3 cut(s)	49, 297, 471
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	3 cut(s)	49, 297, 471
FaeI	CATG	2 cut(s)	53, 136
FaiI	YATR	5 cut(s)	51, 134, 150, 234, 255
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	49, 132
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	2 cut(s)	53, 136
HinfI	GANTC	2 cut(s)	60, 373
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	274
Hpy188III	TCNNGA	4 cut(s)	25, 274, 292, 370
HpyAV	CCTTC	4 cut(s)	148, 387, 448, 457
HpyCH4IV	ACGT	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	53, 136
Kzo9I	GATC	2 cut(s)	21, 270
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	301, 476
LpnPI	CCDG	8 cut(s)	116, 147, 209, 252, 298, 339, 366, 414
Lsp1109I	GCAGC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	4 cut(s)	10, 244, 318, 326
MalI	GATC	2 cut(s)	23, 272
MboI	GATC	2 cut(s)	21, 270
MboII	GAAGA	2 cut(s)	196, 199
MhlI	GDGCHC	2 cut(s)	194, 306
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	125, 130, 357, 415
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	54
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	2 cut(s)	21, 270
NlaIII	CATG	2 cut(s)	53, 136
NmuCI	GTSAC	4 cut(s)	10, 244, 318, 326
PciSI	GCTCTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	21, 270
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	194, 306
SetI	ASST	7 cut(s)	225, 282, 306, 339, 412, 430, 481
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	3 cut(s)	49, 297, 471
TaiI	ACGT	1 cut(s)	339
TasI	AATT	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	4 cut(s)	10, 244, 318, 326
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	4 cut(s)	10, 244, 318, 326
TspRI	CASTG	1 cut(s)	331
Vha464I	CTTAAG	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.