FvH4_6g07830

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005425
Physical Location & Seq
Forward (+)
4683586 .. 4684475
890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07830.t1

Sequence Viewer

Length: 480 bp
ATGTCTATTGTAACTGATGAGTTGAGAGCCAAGGCTGATGAGCTCTATCATGGTGATGCTATCTGCCAGGAGAAGTCAAAGTTCTTGCTAACTGAGAAGGGACTCCCCAATGGGCTCCTTCCCATGAAGGACATGGTGGAATGTGGCTACATCAAAGAGACTGGCTTTGTTTGGCTCAAGCAGAAGAAGAGCACCACCCACAAGTTTGAGAAGGTTGGGAGGCTGGGAAGCTATGCAACTGAGATAACAGCCTATGTTGAGAAGGGCAAGATCAAAAAGCTGACTGGTGTCAAGACCAAGGAGCTCATGATCTGGGTGTCACTCAGTGACATCTACTTGGAAGATGGTGGGAAGATCACCTTCAAGTCCCCTACAGGGCTATCCAGGACATTTCCTGCCTCGGCCTTCGAGCTTGATGGACCAGATGGTGGCAAGGTTGTGGAGGAGCACGAGGACGTCCCGGAAGCTGTGGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

160

Amino Acids

17.66

Weight (kDa)

5.71

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 29 - 137 4e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 456
AdeI CACNNNGTG 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 375, 428
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 2 cut(s) 66, 383
AluBI AGCT 6 cut(s) 43, 231, 280, 304, 412, 467
AluI AGCT 6 cut(s) 43, 231, 280, 304, 412, 467
Alw21I GWGCWC 4 cut(s) 45, 194, 306, 450
Alw26I GTCTC 1 cut(s) 152
AoxI GGCC 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 2 cut(s) 65, 349
AvaII GGWCC 1 cut(s) 419
BanII GRGCYC 3 cut(s) 45, 117, 306
BauI CACGAG 1 cut(s) 449
Bbv12I GWGCWC 4 cut(s) 45, 194, 306, 450
BccI CCATC 3 cut(s) 338, 410, 419
BciT130I CCWGG 2 cut(s) 68, 385
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 478
BfmI CTRYAG 1 cut(s) 372
Bme1390I CCNGG 3 cut(s) 68, 385, 461
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 3 cut(s) 68, 385, 461
BmsI GCATC 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 30, 297, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 428
Bse1I ACTGG 2 cut(s) 166, 289
BseBI CCWGG 2 cut(s) 68, 385
BseDI CCNNGG 3 cut(s) 30, 297, 399
BseLI CCNNNNNNNGG 2 cut(s) 375, 428
BseMII CTCAG 3 cut(s) 84, 231, 337
BseNI ACTGG 2 cut(s) 166, 289
BseRI GAGGAG 1 cut(s) 458
BseYI CCCAGC 1 cut(s) 223
BshFI GGCC 1 cut(s) 404
BsiHKAI GWGCWC 4 cut(s) 45, 194, 306, 450
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 3 cut(s) 114, 352, 443
BslI CCNNNNNNNGG 2 cut(s) 375, 428
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 114, 352, 443
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 5 cut(s) 45, 117, 194, 306, 450
Bsp143I GATC 3 cut(s) 270, 309, 354
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 3 cut(s) 85, 232, 336
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 182
BsrI ACTGG 2 cut(s) 166, 289
BssECI CCNNGG 3 cut(s) 30, 297, 399
BssMI GATC 3 cut(s) 270, 309, 354
BssNI GRCGYC 1 cut(s) 456
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 2 cut(s) 30, 297
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 2 cut(s) 68, 385
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 456
BstDEI CTNAG 3 cut(s) 93, 240, 323
BstKTI GATC 3 cut(s) 273, 312, 357
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 270, 309, 354
BstNI CCWGG 2 cut(s) 68, 385
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 3 cut(s) 66, 383, 459
BstSFI CTRYAG 1 cut(s) 372
BsuRI GGCC 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 331
CciI TCATGA 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 419
CviAII CATG 4 cut(s) 50, 124, 133, 307
DdeI CTNAG 3 cut(s) 93, 240, 323
DpnI GATC 3 cut(s) 272, 311, 356
DpnII GATC 3 cut(s) 270, 309, 354
DraIII CACNNNGTG 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 2 cut(s) 43, 304
Eco130I CCWWGG 2 cut(s) 30, 297
Eco24I GRGCYC 3 cut(s) 45, 117, 306
Eco47I GGWCC 1 cut(s) 419
Eco53kI GAGCTC 2 cut(s) 43, 304
EcoICRI GAGCTC 2 cut(s) 43, 304
EcoRII CCWGG 2 cut(s) 66, 383
EcoT14I CCWWGG 2 cut(s) 30, 297
EcoT38I GRGCYC 3 cut(s) 45, 117, 306
ErhI CCWWGG 2 cut(s) 30, 297
FaeI CATG 4 cut(s) 53, 127, 136, 310
FaiI YATR 6 cut(s) 51, 125, 134, 234, 255, 308
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 3 cut(s) 114, 352, 443
FatI CATG 4 cut(s) 49, 123, 132, 306
FriOI GRGCYC 3 cut(s) 45, 117, 306
FspBI CTAG 1 cut(s) 478
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 404
HapII CCGG 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 4 cut(s) 53, 127, 136, 310
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 461
HphI GGTGA 2 cut(s) 65, 349
Hpy188III TCNNGA 2 cut(s) 292, 307
HpyAV CCTTC 7 cut(s) 91, 121, 128, 205, 256, 370, 415
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 93, 240, 323
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 4 cut(s) 53, 127, 136, 310
Kzo9I GATC 3 cut(s) 270, 309, 354
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 3 cut(s) 120, 301, 445
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 478
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 10, 318, 326
MalI GATC 3 cut(s) 272, 311, 356
MboI GATC 3 cut(s) 270, 309, 354
MboII GAAGA 4 cut(s) 196, 199, 353, 364
MhlI GDGCHC 5 cut(s) 45, 117, 194, 306, 450
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 4 cut(s) 213, 409, 436, 445
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 3 cut(s) 68, 385, 461
MvaI CCWGG 2 cut(s) 68, 385
NciI CCSGG 1 cut(s) 461
NdeII GATC 3 cut(s) 270, 309, 354
NlaIII CATG 4 cut(s) 53, 127, 136, 310
NlaIV GGNNCC 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 318, 326
PagI TCATGA 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 428
PfoI TCCNGGA 2 cut(s) 383, 459
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PshAI GACNNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 2 cut(s) 45, 306
Psp6I CCWGG 2 cut(s) 66, 383
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 66, 383
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 54
SacI GAGCTC 2 cut(s) 45, 306
SapI GCTCTTC 1 cut(s) 182
Sau3AI GATC 3 cut(s) 270, 309, 354
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 3 cut(s) 68, 385, 461
SduI GDGCHC 5 cut(s) 45, 117, 194, 306, 450
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SspMI CTAG 1 cut(s) 478
SstI GAGCTC 2 cut(s) 45, 306
StyD4I CCNGG 3 cut(s) 66, 383, 459
StyI CCWWGG 2 cut(s) 30, 297
TaiI ACGT 1 cut(s) 459
TaqI TCGA 1 cut(s) 408
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 318, 326
Tsp45I GTSAC 2 cut(s) 318, 326
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 1 cut(s) 478
ZraI GACGTC 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.